Wall clock time and date at job start Mon Mar 30 2020 01:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48501 * 109.47015 * 269.99277 * 3 2 1 5 5 H 1.48493 * 109.47275 * 29.99308 * 3 2 1 6 6 H 1.48503 * 109.47289 * 149.99809 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00243 * 180.02562 * 7 2 1 10 10 C 1.53508 * 114.17293 * 180.02562 * 9 7 2 11 11 N 1.47479 * 87.93308 * 220.13403 * 10 9 7 12 12 C 1.46902 * 111.00009 * 138.70005 * 11 10 9 13 13 C 1.50701 * 109.47098 * 170.00416 * 12 11 10 14 14 C 1.39409 * 119.51718 * 90.00282 * 13 12 11 15 15 C 1.36062 * 120.96865 * 180.02562 * 14 13 12 16 16 C 1.40585 * 119.71362 * 359.97438 * 15 14 13 17 17 N 1.33750 * 121.09467 * 179.97438 * 16 15 14 18 18 C 1.31344 * 119.70635 * 180.02562 * 17 16 15 19 19 C 1.39678 * 120.70764 * 0.04290 * 18 17 16 20 20 N 1.31337 * 120.70962 * 359.97438 * 19 18 17 21 21 C 1.33754 * 119.71164 * 359.97438 * 20 19 18 22 22 C 1.36063 * 119.51253 * 270.23684 * 13 12 11 23 23 C 1.47487 * 87.83342 * 27.00984 * 11 10 9 24 24 H 0.97000 * 119.99716 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.25175 * 312.95131 * 9 7 2 26 26 H 1.08997 * 113.47605 * 105.37126 * 10 9 7 27 27 H 1.08999 * 113.47678 * 334.90615 * 10 9 7 28 28 H 1.08995 * 109.46808 * 50.00063 * 12 11 10 29 29 H 1.09000 * 109.46889 * 290.00646 * 12 11 10 30 30 H 1.08003 * 119.51353 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.13925 * 179.97438 * 15 14 13 32 32 H 1.07996 * 119.64323 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.64746 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.14226 * 359.97438 * 22 13 12 35 35 H 1.09004 * 113.47586 * 87.75233 * 23 11 10 36 36 H 1.08995 * 113.47454 * 218.22195 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.1400 -2.5947 0.0010 11 7 5.1459 -2.0850 0.9516 12 6 5.4199 -3.0699 2.0065 13 6 6.6153 -2.6263 2.8097 14 6 6.4284 -1.8190 3.9308 15 6 7.4867 -1.4009 4.6768 16 6 8.7894 -1.7868 4.3159 17 7 9.8496 -1.3914 5.0292 18 6 11.0547 -1.7676 4.6671 19 6 11.2421 -2.5762 3.5436 20 7 10.2169 -2.9769 2.8271 21 6 8.9795 -2.6079 3.1761 22 6 7.8617 -3.0156 2.4272 23 6 4.1438 -1.0987 1.3967 24 1 -0.4850 0.8401 -0.0004 25 1 3.9421 -0.5120 -0.7319 26 1 4.5599 -2.8821 -0.9628 27 1 3.4916 -3.3616 0.4246 28 1 5.6259 -4.0396 1.5536 29 1 4.5523 -3.1518 2.6613 30 1 5.4289 -1.5203 4.2107 31 1 7.3264 -0.7754 5.5426 32 1 11.9100 -1.4481 5.2440 33 1 12.2407 -2.8751 3.2611 34 1 7.9914 -3.6383 1.5545 35 1 3.4963 -1.4664 2.1928 36 1 4.5669 -0.1184 1.6155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602706963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:49 Heat of formation + Delta-G solvation = 105.986296 kcal Electronic energy + Delta-G solvation = -19250.545540 eV Core-core repulsion = 16314.894869 eV Total energy + Delta-G solvation = -2935.650671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47884 -39.42275 -37.57361 -34.90409 -32.93140 -31.93170 -30.76138 -29.13068 -26.41626 -25.20200 -24.85252 -23.79802 -22.43143 -21.56385 -18.84198 -18.48718 -17.86819 -17.13938 -16.91743 -15.37415 -15.06122 -15.00287 -14.76601 -14.62563 -14.30589 -13.73185 -13.64780 -13.18173 -12.70494 -12.15958 -11.91172 -11.85615 -11.82635 -11.80100 -11.77601 -11.24221 -11.04995 -10.41257 -10.00931 -9.99993 -9.67785 -9.25528 -9.18550 -8.95342 -8.62077 -8.52968 -8.24535 -6.14931 -4.15873 0.12714 0.43716 1.86084 2.69273 3.26928 3.35763 3.40178 3.85419 3.92630 4.00416 4.16517 4.38328 4.57776 4.67549 4.78101 4.98430 5.04592 5.10016 5.14070 5.28913 5.38985 5.63502 5.75480 5.79662 5.90993 5.99516 6.07680 6.09707 6.21296 6.34234 6.44895 6.45489 6.60725 6.69326 6.89947 7.12571 7.29504 7.58582 7.62456 7.75437 8.43756 8.87970 9.48016 10.97463 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.003996 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.842062 B = 7006.151225 C = 7335.852938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.009 3.991 11 N -0.479 5.479 12 C 0.050 3.950 13 C -0.037 4.037 14 C -0.080 4.080 15 C -0.089 4.089 16 C 0.075 3.925 17 N -0.426 5.426 18 C 0.066 3.934 19 C 0.069 3.931 20 N -0.425 5.425 21 C 0.082 3.918 22 C -0.073 4.073 23 C -0.012 4.012 24 H 0.265 0.735 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.136 -4.932 9.145 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.019 4.019 10 C -0.119 4.119 11 N -0.201 5.201 12 C -0.078 4.078 13 C -0.039 4.039 14 C -0.101 4.101 15 C -0.109 4.109 16 C -0.050 4.050 17 N -0.140 5.140 18 C -0.110 4.110 19 C -0.107 4.107 20 N -0.139 5.139 21 C -0.042 4.042 22 C -0.093 4.093 23 C -0.141 4.141 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.404 -4.635 8.895 21.843 hybrid contribution -0.201 0.639 0.450 0.807 sum 19.203 -3.996 9.346 21.727 Atomic orbital electron populations 1.69908 1.06420 1.27173 1.50019 1.25010 0.94634 0.99241 0.93924 0.86882 0.80725 0.83404 0.78768 1.20252 1.21468 1.18176 1.20908 0.88181 0.94538 1.51393 0.90746 1.20497 0.96263 0.92731 0.92387 1.23826 0.92305 0.99631 0.96169 1.68941 1.31817 1.09461 1.09858 1.21741 0.94493 0.97089 0.94490 1.19720 0.95007 0.95075 0.94135 1.21046 0.99704 0.95498 0.93828 1.20739 0.89471 1.00081 1.00561 1.19558 0.94108 0.97494 0.93807 1.68650 0.98905 1.18473 1.27966 1.23978 0.95718 0.95301 0.95959 1.23995 0.99111 0.95017 0.92562 1.68666 0.98577 1.18754 1.27896 1.19555 0.92502 0.97217 0.94914 1.20611 0.89543 1.00232 0.98935 1.24486 0.92204 0.95926 1.01477 0.92543 0.92570 0.91333 0.91834 0.90196 0.92259 0.84599 0.84341 0.81147 0.81115 0.84293 0.91535 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 20.91 27.14 -169.99 -4.61 16.30 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -5.86 5.68 56.52 0.32 -5.54 16 7 C -0.51 -13.76 9.38 -34.44 -0.32 -14.08 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.00 0.02 2.95 -91.25 -0.27 -0.25 16 10 C 0.01 0.17 7.25 -7.55 -0.05 0.12 16 11 N -0.48 -8.63 6.32 -246.10 -1.55 -10.18 16 12 C 0.05 0.74 4.91 -4.97 -0.02 0.71 16 13 C -0.04 -0.52 5.43 -104.97 -0.57 -1.09 16 14 C -0.08 -1.06 9.59 -39.93 -0.38 -1.44 16 15 C -0.09 -1.15 9.98 -39.48 -0.39 -1.54 16 16 C 0.07 1.04 6.59 -84.80 -0.56 0.49 16 17 N -0.43 -5.46 10.46 -10.80 -0.11 -5.57 16 18 C 0.07 0.62 11.21 -17.22 -0.19 0.43 16 19 C 0.07 0.65 11.21 -17.23 -0.19 0.46 16 20 N -0.42 -5.60 10.46 -10.80 -0.11 -5.72 16 21 C 0.08 1.18 6.59 -84.80 -0.56 0.62 16 22 C -0.07 -1.03 9.59 -39.48 -0.38 -1.41 16 23 C -0.01 -0.24 6.70 -7.54 -0.05 -0.29 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.06 1.30 7.04 -51.93 -0.37 0.94 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 28 H 0.08 1.06 8.01 -51.93 -0.42 0.65 16 29 H 0.06 0.85 7.24 -51.93 -0.38 0.48 16 30 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.07 1.33 7.38 -51.93 -0.38 0.95 16 36 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -31.45 304.52 -9.57 -41.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.49 Total: 0.76 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.05 Total: -15.31 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -1.01 Total: -47.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.61 Total: 16.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.45 -9.57 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.007 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds