Wall clock time and date at job start Mon Mar 30 2020 01:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48501 * 109.47015 * 269.99277 * 3 2 1 5 5 H 1.48493 * 109.47275 * 29.99308 * 3 2 1 6 6 H 1.48503 * 109.47289 * 149.99809 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00243 * 180.02562 * 7 2 1 10 10 C 1.53508 * 114.17293 * 180.02562 * 9 7 2 11 11 N 1.47479 * 87.93308 * 220.13403 * 10 9 7 12 12 C 1.46902 * 111.00009 * 138.70005 * 11 10 9 13 13 C 1.50701 * 109.47098 * 170.00416 * 12 11 10 14 14 C 1.39409 * 119.51718 * 90.00282 * 13 12 11 15 15 C 1.36062 * 120.96865 * 180.02562 * 14 13 12 16 16 C 1.40585 * 119.71362 * 359.97438 * 15 14 13 17 17 N 1.33750 * 121.09467 * 179.97438 * 16 15 14 18 18 C 1.31344 * 119.70635 * 180.02562 * 17 16 15 19 19 C 1.39678 * 120.70764 * 0.04290 * 18 17 16 20 20 N 1.31337 * 120.70962 * 359.97438 * 19 18 17 21 21 C 1.33754 * 119.71164 * 359.97438 * 20 19 18 22 22 C 1.36063 * 119.51253 * 270.23684 * 13 12 11 23 23 C 1.47487 * 87.83342 * 27.00984 * 11 10 9 24 24 H 0.97000 * 119.99716 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.25175 * 312.95131 * 9 7 2 26 26 H 1.08997 * 113.47605 * 105.37126 * 10 9 7 27 27 H 1.08999 * 113.47678 * 334.90615 * 10 9 7 28 28 H 1.08995 * 109.46808 * 50.00063 * 12 11 10 29 29 H 1.09000 * 109.46889 * 290.00646 * 12 11 10 30 30 H 1.08003 * 119.51353 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.13925 * 179.97438 * 15 14 13 32 32 H 1.07996 * 119.64323 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.64746 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.14226 * 359.97438 * 22 13 12 35 35 H 1.09004 * 113.47586 * 87.75233 * 23 11 10 36 36 H 1.08995 * 113.47454 * 218.22195 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.1400 -2.5947 0.0010 11 7 5.1459 -2.0850 0.9516 12 6 5.4199 -3.0699 2.0065 13 6 6.6153 -2.6263 2.8097 14 6 6.4284 -1.8190 3.9308 15 6 7.4867 -1.4009 4.6768 16 6 8.7894 -1.7868 4.3159 17 7 9.8496 -1.3914 5.0292 18 6 11.0547 -1.7676 4.6671 19 6 11.2421 -2.5762 3.5436 20 7 10.2169 -2.9769 2.8271 21 6 8.9795 -2.6079 3.1761 22 6 7.8617 -3.0156 2.4272 23 6 4.1438 -1.0987 1.3967 24 1 -0.4850 0.8401 -0.0004 25 1 3.9421 -0.5120 -0.7319 26 1 4.5599 -2.8821 -0.9628 27 1 3.4916 -3.3616 0.4246 28 1 5.6259 -4.0396 1.5536 29 1 4.5523 -3.1518 2.6613 30 1 5.4289 -1.5203 4.2107 31 1 7.3264 -0.7754 5.5426 32 1 11.9100 -1.4481 5.2440 33 1 12.2407 -2.8751 3.2611 34 1 7.9914 -3.6383 1.5545 35 1 3.4963 -1.4664 2.1928 36 1 4.5669 -0.1184 1.6155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602706963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:48 Heat of formation + Delta-G solvation = 83.175395 kcal Electronic energy + Delta-G solvation = -19251.534695 eV Core-core repulsion = 16314.894869 eV Total energy + Delta-G solvation = -2936.639826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.37335 -40.89008 -38.60883 -35.79504 -34.80636 -33.27439 -31.68216 -30.55838 -27.86170 -26.71762 -25.93728 -25.02210 -23.52073 -22.82518 -20.44814 -19.51785 -19.14023 -18.68960 -17.88242 -16.91124 -16.41415 -16.08292 -15.83735 -15.65766 -15.46011 -15.30194 -14.84514 -14.53076 -14.37924 -13.54079 -13.40585 -13.00948 -12.90178 -12.76824 -12.71371 -12.68516 -12.64608 -12.00820 -11.81915 -11.64632 -11.42550 -11.08861 -10.64757 -10.11210 -9.92806 -9.74835 -9.53606 -8.28989 -6.33673 -0.76201 -0.45464 0.91646 1.37789 1.40721 1.52434 1.78715 2.37620 2.94999 3.04436 3.07771 3.17716 3.29269 3.34658 3.71414 3.82301 4.01082 4.07436 4.13503 4.19128 4.32962 4.39738 4.47765 4.56908 4.67440 4.75127 4.82809 4.91291 4.92132 5.03787 5.07503 5.23663 5.30058 5.48397 5.52552 5.63853 5.68388 6.23493 6.28033 6.30368 6.72470 6.73819 7.33500 8.86962 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.003996 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.842062 B = 7006.151225 C = 7335.852938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.512 4.512 8 H 0.037 0.963 9 C -0.017 4.017 10 C 0.018 3.982 11 N -0.475 5.475 12 C 0.053 3.947 13 C -0.047 4.047 14 C -0.090 4.090 15 C -0.091 4.091 16 C 0.054 3.946 17 N -0.452 5.452 18 C 0.080 3.920 19 C 0.081 3.919 20 N -0.455 5.455 21 C 0.059 3.941 22 C -0.079 4.079 23 C 0.000 4.000 24 H 0.266 0.734 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.218 0.782 33 H 0.217 0.783 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.658 -4.555 10.103 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.550 4.550 8 H 0.056 0.944 9 C -0.036 4.036 10 C -0.110 4.110 11 N -0.197 5.197 12 C -0.075 4.075 13 C -0.050 4.050 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.069 4.069 17 N -0.166 5.166 18 C -0.097 4.097 19 C -0.095 4.095 20 N -0.169 5.169 21 C -0.063 4.063 22 C -0.099 4.099 23 C -0.129 4.129 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.235 0.765 33 H 0.234 0.766 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 22.911 -4.277 9.851 25.303 hybrid contribution -1.085 0.413 0.198 1.177 sum 21.827 -3.864 10.049 24.337 Atomic orbital electron populations 1.70049 1.08284 1.28139 1.52284 1.25847 0.95296 1.03031 0.93834 0.85862 0.80061 0.78760 0.79020 1.19838 1.21441 1.16143 1.21142 0.90588 0.93050 1.50197 0.94443 1.20501 0.93510 0.95419 0.94194 1.23698 0.92335 0.97591 0.97388 1.68880 1.30363 1.09839 1.10577 1.21742 0.95105 0.96831 0.93803 1.19625 0.94583 0.96093 0.94687 1.21133 1.00250 0.95745 0.93882 1.20927 0.89310 0.99932 1.00805 1.19742 0.94934 0.98017 0.94190 1.68712 0.99797 1.19578 1.28505 1.24839 0.95896 0.93314 0.95611 1.24846 1.00073 0.93139 0.91485 1.68699 0.98891 1.20027 1.29272 1.19661 0.93165 0.98063 0.95435 1.20684 0.89804 1.00326 0.99075 1.24235 0.92410 0.96743 0.99518 0.92500 0.92759 0.89899 0.91830 0.88675 0.91914 0.83828 0.82993 0.76536 0.76622 0.84189 0.91700 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.02 1.00 5.47 84.65 0.46 1.46 16 3 Si 0.94 43.25 27.14 68.60 1.86 45.11 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.24 -10.13 5.68 99.48 0.57 -9.56 16 7 C -0.51 -28.08 9.38 25.60 0.24 -27.84 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 9 C -0.02 -0.75 2.95 -11.20 -0.03 -0.79 16 10 C 0.02 0.69 7.25 83.57 0.61 1.29 16 11 N -0.47 -16.46 6.32 -932.51 -5.89 -22.35 16 12 C 0.05 1.50 4.91 85.56 0.42 1.92 16 13 C -0.05 -1.29 5.43 -20.09 -0.11 -1.40 16 14 C -0.09 -2.29 9.59 22.05 0.21 -2.08 16 15 C -0.09 -2.25 9.98 22.34 0.22 -2.03 16 16 C 0.05 1.44 6.59 40.30 0.27 1.71 16 17 N -0.45 -10.51 10.46 -188.09 -1.97 -12.47 16 18 C 0.08 1.19 11.21 85.11 0.95 2.15 16 19 C 0.08 1.24 11.21 85.11 0.95 2.19 16 20 N -0.45 -11.05 10.46 -188.08 -1.97 -13.02 16 21 C 0.06 1.63 6.59 40.30 0.27 1.89 16 22 C -0.08 -2.16 9.59 22.34 0.21 -1.95 16 23 C 0.00 0.00 6.70 83.57 0.56 0.56 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.05 2.46 7.04 -2.39 -0.02 2.45 16 26 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.06 2.36 7.87 -2.39 -0.02 2.34 16 28 H 0.09 2.39 8.01 -2.39 -0.02 2.38 16 29 H 0.06 1.74 7.24 -2.39 -0.02 1.73 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.06 2.55 7.38 -2.39 -0.02 2.54 16 36 H 0.06 2.51 7.11 -2.39 -0.02 2.49 16 Total: -1.00 -69.77 304.52 -1.49 -71.26 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.94 Total: 12.03 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 5.23 Total: -22.91 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -9.53 Total: -105.49 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.86 Total: 45.11 kcal Total: -69.77 -1.49 -71.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602706963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.438 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds