Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00182 * 2 1 4 4 C 1.53000 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99859 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00314 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99869 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47046 * 90.00129 * 11 9 7 13 13 H 1.48505 * 109.47084 * 209.99952 * 11 9 7 14 14 H 1.48496 * 109.47113 * 330.00376 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21583 * 119.99947 * 0.02562 * 15 5 4 17 17 N 1.34773 * 120.00097 * 180.27545 * 15 5 4 18 18 C 1.39482 * 120.00393 * 179.72700 * 17 15 5 19 19 C 1.42035 * 126.89227 * 359.70782 * 18 17 15 20 20 C 1.35248 * 103.95500 * 179.91082 * 19 18 17 21 21 O 1.34089 * 106.61251 * 0.35135 * 20 19 18 22 22 N 1.20913 * 111.74180 * 359.76420 * 21 20 19 23 23 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46739 * 300.00007 * 1 2 3 25 25 H 1.09000 * 109.46924 * 60.00354 * 1 2 3 26 26 H 1.08991 * 109.47019 * 60.00040 * 3 2 1 27 27 H 1.09001 * 109.46848 * 300.00150 * 3 2 1 28 28 H 1.08994 * 109.47070 * 305.00273 * 4 3 2 29 29 H 1.08996 * 109.47306 * 185.00018 * 4 3 2 30 30 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 31 31 H 1.09004 * 109.47612 * 149.99559 * 6 5 4 32 32 H 0.96999 * 120.00313 * 180.02562 * 10 9 7 33 33 H 0.97000 * 120.00112 * 359.73180 * 17 15 5 34 34 H 1.07995 * 128.02066 * 0.02562 * 19 18 17 35 35 H 1.07995 * 126.68799 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2979 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8606 -2.6288 -0.9528 10 7 7.0788 -2.9829 -0.6061 11 14 4.6175 -3.9293 -1.4559 12 1 4.7021 -4.1542 -2.9214 13 1 4.9122 -5.1980 -0.7425 14 1 3.2502 -3.4695 -1.1038 15 6 4.2615 1.3337 -2.3218 16 8 4.1544 2.5425 -2.2470 17 7 4.6612 0.7628 -3.4754 18 6 4.9515 1.5585 -4.5835 19 6 4.8709 2.9745 -4.6611 20 6 5.2518 3.2539 -5.9284 21 8 5.5173 2.0787 -6.5169 22 7 5.3466 1.1506 -5.7609 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8515 0.5682 0.8409 29 1 3.9786 2.1764 0.0889 30 1 3.3853 -1.3630 -0.6735 31 1 3.9120 -1.2115 -2.3670 32 1 7.3319 -3.9193 -0.6119 33 1 4.7469 -0.2016 -3.5351 34 1 4.5760 3.6673 -3.8870 35 1 5.3227 4.2324 -6.3799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612580750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = 7.565259 kcal Electronic energy + Delta-G solvation = -21042.639590 eV Core-core repulsion = 17659.579048 eV Total energy + Delta-G solvation = -3383.060542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.53824 -39.97257 -37.70648 -35.56489 -34.94929 -32.61962 -32.11557 -31.16256 -29.76954 -27.68577 -26.09348 -23.70779 -22.72548 -22.62437 -21.45870 -19.56796 -17.98551 -17.30309 -17.29390 -17.08902 -16.39561 -16.07683 -15.75079 -15.16650 -14.70208 -14.29791 -14.28748 -13.61063 -13.49087 -12.86552 -12.63495 -12.31945 -12.22231 -11.79901 -11.63672 -11.27108 -11.11449 -11.04735 -10.90691 -10.63394 -10.28479 -9.72964 -9.63367 -9.47228 -9.45272 -8.73978 -8.47594 -7.80430 -6.23011 -4.26054 1.76629 2.53309 2.78391 3.18771 3.27853 3.30121 3.58708 3.73278 4.01325 4.23799 4.26794 4.75281 5.07754 5.26096 5.30702 5.36080 5.46363 5.51444 5.52596 5.57499 5.71413 5.73174 5.88963 6.20451 6.27939 6.39010 6.72220 6.86874 6.99788 7.29195 7.39894 7.48103 8.13829 8.39178 8.68169 8.81003 8.93640 9.35702 10.89387 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.007664 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.017710 B = 3652.658617 C = 5102.923345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.045 3.955 4 C 0.140 3.860 5 N -0.590 5.590 6 C 0.210 3.790 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.888 5.888 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.259 1.259 15 C 0.719 3.281 16 O -0.600 6.600 17 N -0.638 5.638 18 C 0.275 3.725 19 C -0.223 4.223 20 C -0.066 4.066 21 O 0.088 5.912 22 N -0.400 5.400 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.424 0.576 34 H 0.190 0.810 35 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 9.752 -3.822 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.033 4.033 4 C 0.016 3.984 5 N -0.323 5.323 6 C 0.089 3.911 7 C -0.587 4.587 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.525 5.525 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.184 1.184 15 C 0.421 3.579 16 O -0.480 6.480 17 N -0.293 5.293 18 C 0.024 3.976 19 C -0.246 4.246 20 C -0.148 4.148 21 O 0.030 5.970 22 N -0.119 5.119 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.207 0.793 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.616 9.062 -4.201 13.865 hybrid contribution -0.836 -0.505 0.333 1.032 sum -10.453 8.557 -3.868 14.051 Atomic orbital electron populations 1.22690 0.82011 1.02374 0.99385 1.88012 1.18832 1.27767 1.95272 1.23098 0.95227 0.84827 1.00123 1.21328 0.90844 0.99890 0.86365 1.46980 1.67232 1.08324 1.09719 1.19845 0.98757 0.75456 0.97015 1.21412 0.95824 0.93874 1.47549 0.90318 1.24864 0.95103 0.98306 0.94298 1.69885 1.18102 1.17612 1.46922 0.86968 0.82575 0.81792 0.79310 1.19869 1.20756 1.18357 1.15515 0.77747 0.84796 0.79864 1.90750 1.61542 1.12238 1.83423 1.41745 1.68779 1.10808 1.07986 1.20413 0.99227 0.90195 0.87754 1.23054 1.08540 0.94297 0.98757 1.25868 1.02549 0.92394 0.93944 1.84797 1.65754 1.11225 1.35272 1.74045 1.24944 1.11105 1.01767 0.89962 0.94463 0.94582 0.92740 0.93178 0.88822 0.88779 0.92685 0.96566 0.92293 0.73587 0.79314 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.19 9.53 -35.23 -0.34 -6.52 16 3 C 0.05 0.67 6.28 37.16 0.23 0.90 16 4 C 0.14 2.40 5.81 -4.04 -0.02 2.37 16 5 N -0.59 -11.99 2.42 -180.81 -0.44 -12.43 16 6 C 0.21 4.71 3.82 -5.19 -0.02 4.69 16 7 C -0.55 -14.55 9.94 -34.44 -0.34 -14.89 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 11 Si 0.87 20.13 27.47 -169.99 -4.67 15.47 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 15 C 0.72 14.87 8.24 -86.92 -0.72 14.15 16 16 O -0.60 -12.47 13.20 5.29 0.07 -12.40 16 17 N -0.64 -12.90 5.29 -15.82 -0.08 -12.98 16 18 C 0.28 5.20 8.18 -154.84 -1.27 3.93 16 19 C -0.22 -3.56 9.86 -39.19 -0.39 -3.94 16 20 C -0.07 -0.81 12.28 29.67 0.36 -0.44 16 21 O 0.09 1.33 11.19 17.05 0.19 1.52 16 22 N -0.40 -7.34 12.10 31.19 0.38 -6.96 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 29 H 0.09 1.53 7.42 -51.93 -0.39 1.15 16 30 H 0.06 1.25 6.17 -51.93 -0.32 0.93 16 31 H 0.02 0.36 5.78 -51.93 -0.30 0.06 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.42 8.72 6.55 -40.82 -0.27 8.45 16 34 H 0.19 3.06 6.22 -52.49 -0.33 2.73 16 35 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -31.81 302.14 -4.85 -36.65 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.15 Total: 8.09 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.14 Total: 10.32 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.63 Total: -57.69 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.08 Total: -17.40 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.81 -4.85 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612580750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.219 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds