Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00182 * 2 1 4 4 C 1.53000 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99859 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00314 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99869 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47046 * 90.00129 * 11 9 7 13 13 H 1.48505 * 109.47084 * 209.99952 * 11 9 7 14 14 H 1.48496 * 109.47113 * 330.00376 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21583 * 119.99947 * 0.02562 * 15 5 4 17 17 N 1.34773 * 120.00097 * 180.27545 * 15 5 4 18 18 C 1.39482 * 120.00393 * 179.72700 * 17 15 5 19 19 C 1.42035 * 126.89227 * 359.70782 * 18 17 15 20 20 C 1.35248 * 103.95500 * 179.91082 * 19 18 17 21 21 O 1.34089 * 106.61251 * 0.35135 * 20 19 18 22 22 N 1.20913 * 111.74180 * 359.76420 * 21 20 19 23 23 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46739 * 300.00007 * 1 2 3 25 25 H 1.09000 * 109.46924 * 60.00354 * 1 2 3 26 26 H 1.08991 * 109.47019 * 60.00040 * 3 2 1 27 27 H 1.09001 * 109.46848 * 300.00150 * 3 2 1 28 28 H 1.08994 * 109.47070 * 305.00273 * 4 3 2 29 29 H 1.08996 * 109.47306 * 185.00018 * 4 3 2 30 30 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 31 31 H 1.09004 * 109.47612 * 149.99559 * 6 5 4 32 32 H 0.96999 * 120.00313 * 180.02562 * 10 9 7 33 33 H 0.97000 * 120.00112 * 359.73180 * 17 15 5 34 34 H 1.07995 * 128.02066 * 0.02562 * 19 18 17 35 35 H 1.07995 * 126.68799 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2979 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8606 -2.6288 -0.9528 10 7 7.0788 -2.9829 -0.6061 11 14 4.6175 -3.9293 -1.4559 12 1 4.7021 -4.1542 -2.9214 13 1 4.9122 -5.1980 -0.7425 14 1 3.2502 -3.4695 -1.1038 15 6 4.2615 1.3337 -2.3218 16 8 4.1544 2.5425 -2.2470 17 7 4.6612 0.7628 -3.4754 18 6 4.9515 1.5585 -4.5835 19 6 4.8709 2.9745 -4.6611 20 6 5.2518 3.2539 -5.9284 21 8 5.5173 2.0787 -6.5169 22 7 5.3466 1.1506 -5.7609 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8515 0.5682 0.8409 29 1 3.9786 2.1764 0.0889 30 1 3.3853 -1.3630 -0.6735 31 1 3.9120 -1.2115 -2.3670 32 1 7.3319 -3.9193 -0.6119 33 1 4.7469 -0.2016 -3.5351 34 1 4.5760 3.6673 -3.8870 35 1 5.3227 4.2324 -6.3799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612580750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = -14.619174 kcal Electronic energy + Delta-G solvation = -21043.601580 eV Core-core repulsion = 17659.579048 eV Total energy + Delta-G solvation = -3384.022531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.83474 -41.53452 -38.89380 -37.04622 -36.53767 -34.63986 -33.40306 -32.46673 -31.28231 -29.40368 -27.15413 -25.12706 -24.47128 -23.98775 -22.75141 -21.07788 -19.31905 -19.16128 -18.82194 -18.56518 -17.81303 -17.26075 -17.02723 -16.65958 -16.14568 -16.03709 -15.55757 -15.19187 -14.74412 -14.48133 -14.14793 -13.84683 -13.68375 -13.25008 -12.79624 -12.77322 -12.68883 -12.55871 -12.39167 -12.10638 -11.95648 -11.74435 -11.27937 -10.83836 -10.62368 -10.58469 -9.96226 -9.38993 -8.35025 -6.43212 0.60427 1.20318 1.30489 1.35987 1.39173 1.49018 2.18490 2.30222 2.50448 2.75064 2.91897 2.99859 3.51686 3.93864 4.13442 4.19491 4.32816 4.39756 4.51297 4.53856 4.58695 4.60261 4.75026 4.84186 4.90761 4.95076 5.06491 5.36428 5.43944 5.45411 5.83173 6.13595 6.29273 6.59975 6.69812 7.21517 7.33896 7.44913 8.81109 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.007664 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.017710 B = 3652.658617 C = 5102.923345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.056 3.944 4 C 0.132 3.868 5 N -0.595 5.595 6 C 0.225 3.775 7 C -0.546 4.546 8 H 0.032 0.968 9 C 0.022 3.978 10 N -0.939 5.939 11 Si 0.937 3.063 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.239 1.239 15 C 0.715 3.285 16 O -0.604 6.604 17 N -0.645 5.645 18 C 0.241 3.759 19 C -0.252 4.252 20 C -0.020 4.020 21 O 0.096 5.904 22 N -0.424 5.424 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.269 0.731 33 H 0.418 0.582 34 H 0.185 0.815 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 10.646 -4.946 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.022 4.022 4 C 0.009 3.991 5 N -0.328 5.328 6 C 0.103 3.897 7 C -0.584 4.584 8 H 0.050 0.950 9 C -0.178 4.178 10 N -0.578 5.578 11 Si 0.759 3.241 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.162 1.162 15 C 0.416 3.584 16 O -0.485 6.485 17 N -0.299 5.299 18 C -0.009 4.009 19 C -0.275 4.275 20 C -0.101 4.101 21 O 0.036 5.964 22 N -0.142 5.142 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.256 0.744 34 H 0.202 0.798 35 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -11.583 9.981 -5.320 16.189 hybrid contribution -0.161 -0.626 0.635 0.906 sum -11.744 9.355 -4.685 15.728 Atomic orbital electron populations 1.22885 0.79887 1.03438 1.00698 1.87947 1.21219 1.28415 1.95540 1.22968 0.93082 0.84787 1.01358 1.21538 0.93045 0.99675 0.84816 1.47040 1.67511 1.07533 1.10719 1.19535 0.95947 0.76953 0.97260 1.21546 0.97009 0.93022 1.46837 0.94957 1.25757 0.97005 1.00776 0.94217 1.70038 1.20543 1.18271 1.48935 0.85871 0.80653 0.78419 0.79151 1.19023 1.20629 1.16184 1.15617 0.77836 0.84881 0.80058 1.90730 1.61902 1.12215 1.83610 1.41724 1.69036 1.10644 1.08543 1.20833 1.00765 0.91499 0.87782 1.23104 1.10963 0.92868 1.00572 1.26831 0.97957 0.93100 0.92184 1.84754 1.64936 1.11945 1.34723 1.74055 1.25567 1.12651 1.01885 0.89122 0.92345 0.94018 0.89468 0.93744 0.89560 0.88282 0.92282 0.95599 0.92170 0.74368 0.79822 0.70806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.68 9.53 -148.98 -1.42 -14.10 16 3 C 0.06 1.56 6.28 71.98 0.45 2.02 16 4 C 0.13 4.52 5.81 86.38 0.50 5.02 16 5 N -0.60 -24.42 2.42 -844.21 -2.04 -26.46 16 6 C 0.23 10.11 3.82 85.63 0.33 10.44 16 7 C -0.55 -29.83 9.94 25.60 0.25 -29.58 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.02 1.22 5.47 84.65 0.46 1.68 16 10 N -0.94 -56.84 13.96 21.44 0.30 -56.54 16 11 Si 0.94 41.47 27.47 68.60 1.88 43.35 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 15 C 0.71 29.91 8.24 179.06 1.48 31.39 16 16 O -0.60 -25.20 13.20 -3.98 -0.05 -25.25 16 17 N -0.65 -26.55 5.29 -323.26 -1.71 -28.26 16 18 C 0.24 9.07 8.18 134.12 1.10 10.16 16 19 C -0.25 -7.67 9.86 22.52 0.22 -7.45 16 20 C -0.02 -0.41 12.28 67.13 0.82 0.41 16 21 O 0.10 2.68 11.19 71.18 0.80 3.48 16 22 N -0.42 -15.28 12.10 -56.31 -0.68 -15.97 16 23 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 3.04 8.07 -2.39 -0.02 3.02 16 29 H 0.10 3.23 7.42 -2.39 -0.02 3.21 16 30 H 0.06 2.64 6.17 -2.39 -0.01 2.62 16 31 H 0.03 1.13 5.78 -2.38 -0.01 1.12 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 33 H 0.42 17.62 6.55 -92.71 -0.61 17.01 16 34 H 0.18 5.79 6.22 -2.91 -0.02 5.77 16 35 H 0.28 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -71.63 302.14 4.40 -67.23 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.46 Total: 26.59 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 6.87 Total: 25.93 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -4.13 Total: -127.23 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.68 Total: -35.87 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.88 Total: 43.35 kcal Total: -71.63 4.40 -67.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612580750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds