Wall clock time and date at job start Mon Mar 30 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.46851 * 90.02894 * 7 6 4 9 9 O 1.21281 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00043 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47219 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.47074 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00218 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99577 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00300 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99422 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47410 * 60.00300 * 17 15 13 19 19 H 1.48506 * 109.46739 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47055 * 299.99814 * 17 15 13 21 21 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 22 22 O 1.21539 * 123.77572 * 179.76923 * 21 6 4 23 23 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 24 24 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 25 25 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 26 26 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 27 27 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 28 28 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 29 29 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 30 30 H 0.97000 * 119.99842 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.47404 * 299.99483 * 11 10 8 32 32 H 1.09001 * 109.47428 * 59.99513 * 11 10 8 33 33 H 1.08994 * 109.47108 * 299.99860 * 12 11 10 34 34 H 1.08997 * 109.46890 * 60.00242 * 12 11 10 35 35 H 0.96998 * 119.99914 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0380 -2.0560 1.4192 9 8 4.4494 -1.5328 2.3415 10 7 6.0295 -2.9352 1.6646 11 6 6.3960 -3.2593 3.0455 12 6 7.5403 -4.2750 3.0445 13 6 7.9177 -4.6078 4.4650 14 1 7.3936 -4.1420 5.2863 15 6 8.9322 -5.5072 4.7160 16 7 9.5701 -6.0749 3.7159 17 14 9.3995 -5.9204 6.4768 18 1 8.2253 -6.4993 7.1778 19 1 10.5102 -6.9061 6.4758 20 1 9.8341 -4.6848 7.1765 21 6 2.2689 -1.0787 -0.0046 22 8 1.8623 -2.2241 -0.0093 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 2.1839 1.7796 0.8967 27 1 2.1831 1.7802 -0.8962 28 1 4.3420 -2.6289 -0.5151 29 1 5.5235 -1.2976 -0.5156 30 1 6.5005 -3.3534 0.9269 31 1 6.7152 -2.3524 3.5591 32 1 5.5341 -3.6840 3.5600 33 1 7.2208 -5.1817 2.5310 34 1 8.4023 -3.8505 2.5299 35 1 10.2841 -6.7073 3.8925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701271798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:01 Heat of formation + Delta-G solvation = -103.361521 kcal Electronic energy + Delta-G solvation = -20201.977140 eV Core-core repulsion = 16814.106452 eV Total energy + Delta-G solvation = -3387.870688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.42918 -40.65233 -39.74094 -37.30921 -36.79852 -36.11822 -34.88205 -32.15641 -30.86667 -28.70169 -27.32893 -26.40419 -23.54988 -23.10356 -22.18907 -21.10051 -19.02019 -18.68391 -18.45781 -17.82667 -17.55638 -16.97212 -16.61977 -16.48060 -16.22474 -15.83672 -15.48825 -15.11663 -15.05976 -15.01583 -14.43612 -14.30453 -13.46496 -13.39775 -13.26846 -13.23847 -12.92662 -12.57086 -12.26713 -12.09515 -11.82562 -11.64904 -11.45486 -11.39109 -10.71444 -10.62154 -10.13425 -9.98156 -8.25795 -6.36600 0.57497 0.91108 1.40524 1.42895 1.44589 1.50949 1.75933 2.01367 2.27993 2.44353 3.00520 3.08867 3.62899 3.65832 4.08410 4.14235 4.24184 4.27616 4.36438 4.43607 4.45876 4.69034 4.80072 4.89537 4.96415 5.19488 5.38612 5.43620 5.55155 5.75465 6.00249 6.13409 6.26895 6.46560 6.75853 6.93737 7.10765 7.32649 8.85844 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.003344 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.401322 B = 8371.386902 C = 8541.995322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.622 5.622 3 C 0.077 3.923 4 C 0.518 3.482 5 O -0.500 6.500 6 N -0.569 5.569 7 C 0.103 3.897 8 C 0.491 3.509 9 O -0.585 6.585 10 N -0.709 5.709 11 C 0.142 3.858 12 C 0.024 3.976 13 C -0.551 4.551 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.268 1.268 21 C 0.693 3.307 22 O -0.583 6.583 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.416 0.584 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.011 0.989 34 H 0.012 0.988 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 15.372 -12.919 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.360 5.360 3 C -0.047 4.047 4 C 0.308 3.692 5 O -0.372 6.372 6 N -0.313 5.313 7 C -0.022 4.022 8 C 0.277 3.723 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.018 3.982 12 C -0.014 4.014 13 C -0.589 4.589 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.193 1.193 21 C 0.395 3.605 22 O -0.460 6.460 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.166 0.834 27 H 0.185 0.815 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.970 15.307 -12.310 25.958 hybrid contribution 0.891 -0.912 0.732 1.471 sum -16.078 14.395 -11.578 24.490 Atomic orbital electron populations 1.21826 0.71932 1.04763 1.03939 1.47689 1.07777 1.04669 1.75889 1.22759 0.82695 0.89487 1.09744 1.21638 0.93044 0.81537 0.73005 1.90816 1.32579 1.66356 1.47422 1.46035 1.07640 1.09606 1.68059 1.21587 0.91318 0.95731 0.93572 1.21443 0.79560 0.78847 0.92499 1.90660 1.54305 1.53903 1.47668 1.46019 1.36024 1.44011 1.10031 1.21241 0.97493 0.98034 0.81430 1.19130 0.92295 0.93190 0.96774 1.21437 1.18599 1.25739 0.93160 0.92447 1.25865 0.95855 0.95502 1.01850 1.70040 1.23838 1.29569 1.33007 0.85499 0.77997 0.78256 0.79305 1.19411 1.20421 1.19326 1.16073 0.81010 0.85802 0.77615 1.90950 1.77397 1.20623 1.57026 0.90024 0.91792 0.86686 0.83427 0.81471 0.83690 0.82929 0.74781 0.93564 0.93802 0.97109 0.96984 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 11.17 127.77 1.43 2.44 16 2 N -0.62 -9.98 3.42 -866.95 -2.96 -12.94 16 3 C 0.08 0.84 7.66 85.76 0.66 1.50 16 4 C 0.52 11.36 8.31 87.94 0.73 12.09 16 5 O -0.50 -13.93 17.76 -2.89 -0.05 -13.98 16 6 N -0.57 -14.34 2.09 -777.22 -1.63 -15.97 16 7 C 0.10 2.54 6.18 85.63 0.53 3.07 16 8 C 0.49 17.19 7.90 87.66 0.69 17.89 16 9 O -0.58 -25.51 16.43 -3.03 -0.05 -25.56 16 10 N -0.71 -25.10 5.56 -463.06 -2.57 -27.67 16 11 C 0.14 6.29 5.61 86.38 0.48 6.78 16 12 C 0.02 1.21 5.09 29.85 0.15 1.36 16 13 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.69 18.06 8.31 179.44 1.49 19.56 16 22 O -0.58 -19.71 17.15 -3.84 -0.07 -19.78 16 23 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.06 0.85 8.04 -2.38 -0.02 0.83 16 25 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.17 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.15 3.01 7.85 -2.39 -0.02 2.99 16 29 H 0.15 2.86 8.00 -2.39 -0.02 2.84 16 30 H 0.42 12.03 8.47 -92.71 -0.79 11.24 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -83.34 314.91 2.17 -81.17 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.33 Total: 8.43 kcal Atomic # 6 Polarization: 27.67 SS G_CDS: 6.86 Total: 34.54 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -6.88 Total: -110.94 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -0.17 Total: -59.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -83.34 2.17 -81.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701271798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.195 kcal (2) G-P(sol) polarization free energy of solvation -83.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds