Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46967 * 90.02896 * 7 6 4 9 9 C 1.52996 * 109.47188 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47076 * 179.97438 * 9 8 7 11 11 O 1.21289 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00077 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99696 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99718 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00528 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99744 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47042 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46907 * 120.00064 * 17 15 13 20 20 H 1.48492 * 109.47038 * 240.00273 * 17 15 13 21 21 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 22 22 O 1.21539 * 123.77572 * 179.76923 * 21 6 4 23 23 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 24 24 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 25 25 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 26 26 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 27 27 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 28 28 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 29 29 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 30 30 H 1.09011 * 109.46854 * 299.99834 * 8 7 6 31 31 H 1.09005 * 109.47366 * 59.99260 * 8 7 6 32 32 H 1.08994 * 109.46779 * 299.99451 * 9 8 7 33 33 H 1.08997 * 109.47218 * 59.99832 * 9 8 7 34 34 H 0.97000 * 119.99920 * 0.02562 * 12 10 9 35 35 H 0.96998 * 120.00180 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0437 -2.0611 1.4408 9 6 6.1885 -3.0762 1.4398 10 6 6.5655 -3.4095 2.8603 11 8 5.9762 -2.8870 3.7828 12 7 7.5569 -4.2890 3.1058 13 6 7.8995 -4.5927 4.3981 14 1 7.3747 -4.1274 5.2194 15 6 8.9211 -5.4998 4.6510 16 7 9.5593 -6.0663 3.6517 17 14 9.3875 -5.9141 6.4118 18 1 8.5238 -5.1482 7.3460 19 1 9.1995 -7.3686 6.6445 20 1 10.8095 -5.5553 6.6447 21 6 2.2689 -1.0787 -0.0046 22 8 1.8623 -2.2241 -0.0093 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 2.1839 1.7796 0.8967 27 1 2.1831 1.7802 -0.8962 28 1 4.3420 -2.6289 -0.5151 29 1 5.5235 -1.2976 -0.5156 30 1 5.3631 -1.1543 1.9547 31 1 4.1815 -2.4857 1.9551 32 1 5.8696 -3.9829 0.9259 33 1 7.0505 -2.6512 0.9257 34 1 8.0279 -4.7072 2.3681 35 1 10.2722 -6.6999 3.8284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701335310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = -81.635089 kcal Electronic energy + Delta-G solvation = -20080.485536 eV Core-core repulsion = 16693.556977 eV Total energy + Delta-G solvation = -3386.928559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.44485 -38.73838 -38.26084 -36.38400 -35.89147 -34.02377 -32.87183 -31.18017 -29.60894 -27.28566 -26.38573 -24.63152 -22.63464 -22.04083 -20.21630 -19.08748 -17.89092 -17.51617 -17.34378 -16.85691 -15.89109 -15.53355 -15.14362 -15.00733 -14.64530 -14.48169 -14.29990 -14.06907 -13.86397 -13.21518 -12.97251 -12.77637 -12.65527 -12.21805 -11.67367 -11.48076 -11.36838 -11.06601 -10.89761 -10.49401 -10.32581 -10.31923 -10.20205 -9.82679 -9.50465 -9.28997 -8.37752 -7.94622 -6.39525 -3.80262 1.47040 1.89791 2.73821 2.87043 3.18157 3.28452 3.36056 3.79496 3.94450 4.19784 4.40519 4.65991 4.79010 4.84984 4.97081 5.06940 5.25605 5.27235 5.30609 5.40685 5.51327 5.55379 5.77938 5.81876 6.01721 6.13188 6.45248 6.48929 6.62434 6.95388 7.20314 7.57645 7.91524 8.08552 8.63246 9.19949 9.57315 10.08653 10.78294 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037883 B = 0.003335 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.936979 B = 8394.361137 C = 8552.975530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.634 5.634 3 C 0.064 3.936 4 C 0.520 3.480 5 O -0.467 6.467 6 N -0.573 5.573 7 C 0.117 3.883 8 C -0.112 4.112 9 C -0.127 4.127 10 C 0.441 3.559 11 O -0.597 6.597 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.698 3.302 22 O -0.537 6.537 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.393 0.607 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.796 12.896 -11.737 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.374 5.374 3 C -0.063 4.063 4 C 0.307 3.693 5 O -0.337 6.337 6 N -0.319 5.319 7 C -0.004 4.004 8 C -0.151 4.151 9 C -0.168 4.168 10 C 0.227 3.773 11 O -0.483 6.483 12 N -0.198 5.198 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.400 3.600 22 O -0.410 6.410 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.227 0.773 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.760 12.747 -11.115 22.448 hybrid contribution 0.627 -0.507 0.403 0.901 sum -14.133 12.240 -10.712 21.548 Atomic orbital electron populations 1.21500 0.74180 1.03893 1.02337 1.47487 1.06683 1.05389 1.77883 1.22503 0.86965 0.90389 1.06413 1.20847 0.91339 0.82376 0.74727 1.90838 1.30866 1.66134 1.45830 1.46456 1.08178 1.09364 1.67852 1.21883 0.87195 0.91560 0.99729 1.21565 0.99298 1.00260 0.93961 1.21365 0.98601 0.99650 0.97168 1.19881 0.83636 0.83765 0.90014 1.90513 1.55763 1.55897 1.46138 1.41910 1.31022 1.38015 1.08891 1.19778 1.16041 1.22730 0.84455 0.87913 1.25267 0.96440 0.96620 0.99633 1.69618 1.23927 1.29558 1.31155 0.85803 0.78314 0.78197 0.82048 1.19236 1.20738 1.20739 1.15896 0.80856 0.85372 0.77845 1.90997 1.76839 1.18662 1.54504 0.92098 0.89883 0.90256 0.86042 0.86181 0.88521 0.88684 0.90916 0.90675 0.90060 0.90134 0.77340 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.68 11.17 59.85 0.67 1.35 16 2 N -0.63 -5.60 3.42 -187.94 -0.64 -6.24 16 3 C 0.06 0.43 7.66 -4.32 -0.03 0.40 16 4 C 0.52 5.89 8.31 -10.56 -0.09 5.80 16 5 O -0.47 -6.64 17.76 5.60 0.10 -6.54 16 6 N -0.57 -7.28 2.60 -120.73 -0.31 -7.60 16 7 C 0.12 1.53 5.70 -4.04 -0.02 1.51 16 8 C -0.11 -1.87 4.83 -26.73 -0.13 -2.00 16 9 C -0.13 -2.24 5.70 -27.88 -0.16 -2.40 16 10 C 0.44 10.75 7.78 -10.98 -0.09 10.67 16 11 O -0.60 -16.78 15.56 5.55 0.09 -16.70 16 12 N -0.56 -14.69 5.29 -10.96 -0.06 -14.74 16 13 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 14 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 17 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.70 9.08 8.31 -88.02 -0.73 8.34 16 22 O -0.54 -8.86 17.15 5.33 0.09 -8.76 16 23 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.09 1.12 8.00 -51.93 -0.42 0.70 16 30 H 0.07 1.33 8.10 -51.92 -0.42 0.91 16 31 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -36.47 312.66 -5.60 -42.06 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.45 Total: 6.22 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -0.82 Total: 15.42 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.29 Total: -52.82 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: 0.28 Total: -32.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.47 -5.60 -42.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701335310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.571 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds