Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46967 * 90.02896 * 7 6 4 9 9 C 1.52996 * 109.47188 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47076 * 179.97438 * 9 8 7 11 11 O 1.21289 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00077 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99696 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99718 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00528 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99744 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47042 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.46907 * 120.00064 * 17 15 13 20 20 H 1.48492 * 109.47038 * 240.00273 * 17 15 13 21 21 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 22 22 O 1.21539 * 123.77572 * 179.76923 * 21 6 4 23 23 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 24 24 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 25 25 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 26 26 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 27 27 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 28 28 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 29 29 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 30 30 H 1.09011 * 109.46854 * 299.99834 * 8 7 6 31 31 H 1.09005 * 109.47366 * 59.99260 * 8 7 6 32 32 H 1.08994 * 109.46779 * 299.99451 * 9 8 7 33 33 H 1.08997 * 109.47218 * 59.99832 * 9 8 7 34 34 H 0.97000 * 119.99920 * 0.02562 * 12 10 9 35 35 H 0.96998 * 120.00180 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0437 -2.0611 1.4408 9 6 6.1885 -3.0762 1.4398 10 6 6.5655 -3.4095 2.8603 11 8 5.9762 -2.8870 3.7828 12 7 7.5569 -4.2890 3.1058 13 6 7.8995 -4.5927 4.3981 14 1 7.3747 -4.1274 5.2194 15 6 8.9211 -5.4998 4.6510 16 7 9.5593 -6.0663 3.6517 17 14 9.3875 -5.9141 6.4118 18 1 8.5238 -5.1482 7.3460 19 1 9.1995 -7.3686 6.6445 20 1 10.8095 -5.5553 6.6447 21 6 2.2689 -1.0787 -0.0046 22 8 1.8623 -2.2241 -0.0093 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 2.1839 1.7796 0.8967 27 1 2.1831 1.7802 -0.8962 28 1 4.3420 -2.6289 -0.5151 29 1 5.5235 -1.2976 -0.5156 30 1 5.3631 -1.1543 1.9547 31 1 4.1815 -2.4857 1.9551 32 1 5.8696 -3.9829 0.9259 33 1 7.0505 -2.6512 0.9257 34 1 8.0279 -4.7072 2.3681 35 1 10.2722 -6.6999 3.8284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701335310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = -109.260811 kcal Electronic energy + Delta-G solvation = -20081.683478 eV Core-core repulsion = 16693.556977 eV Total energy + Delta-G solvation = -3388.126500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.32975 -40.22017 -39.70156 -37.30160 -36.99443 -36.03018 -34.18469 -33.26022 -30.45248 -28.45016 -27.35204 -26.36931 -23.64947 -23.25442 -21.14957 -20.96935 -19.90552 -18.55809 -18.22625 -17.79002 -17.53600 -16.73781 -16.54659 -16.35503 -15.91505 -15.77957 -15.47985 -15.07980 -14.93638 -14.85749 -14.40344 -13.75510 -13.44860 -13.29987 -13.27002 -13.12001 -12.84141 -12.76580 -12.43676 -12.13205 -11.93784 -11.84782 -11.55694 -11.31065 -10.93064 -10.41393 -10.05266 -9.96359 -8.49834 -5.99246 0.60087 1.07544 1.34677 1.39839 1.54488 1.90379 2.01307 2.05422 2.28533 3.03348 3.17336 3.18603 3.68718 3.94731 4.00020 4.02964 4.25461 4.37372 4.39205 4.43024 4.44481 4.66458 4.69215 4.81046 4.89438 4.95111 5.10749 5.21565 5.38355 5.41858 5.96644 6.08101 6.34202 6.55489 6.99049 7.08501 7.51926 8.07494 8.67769 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037883 B = 0.003335 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.936979 B = 8394.361137 C = 8552.975530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.513 3.487 5 O -0.502 6.502 6 N -0.582 5.582 7 C 0.123 3.877 8 C -0.100 4.100 9 C -0.115 4.115 10 C 0.433 3.567 11 O -0.641 6.641 12 N -0.571 5.571 13 C -0.339 4.339 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.918 5.918 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.268 1.268 21 C 0.688 3.312 22 O -0.583 6.583 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.152 0.848 27 H 0.162 0.838 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 13.982 -12.692 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.363 5.363 3 C -0.049 4.049 4 C 0.303 3.697 5 O -0.374 6.374 6 N -0.327 5.327 7 C 0.002 3.998 8 C -0.139 4.139 9 C -0.155 4.155 10 C 0.222 3.778 11 O -0.529 6.529 12 N -0.207 5.207 13 C -0.469 4.469 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.559 5.559 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.193 1.193 21 C 0.390 3.610 22 O -0.460 6.460 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.169 0.831 27 H 0.180 0.820 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.233 0.767 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.317 13.867 -12.105 23.947 hybrid contribution 0.750 -0.801 0.687 1.295 sum -14.567 13.066 -11.418 22.656 Atomic orbital electron populations 1.21806 0.72109 1.04807 1.03764 1.47740 1.07756 1.04783 1.76002 1.22765 0.83012 0.89475 1.09692 1.21615 0.92859 0.81778 0.73439 1.90822 1.32614 1.66473 1.47443 1.46556 1.08142 1.10080 1.67884 1.21732 0.88395 0.92677 0.97029 1.21395 0.97691 0.98701 0.96108 1.21346 1.00085 1.01285 0.92793 1.21042 0.82206 0.82199 0.92393 1.90479 1.56902 1.57120 1.48437 1.41981 1.31714 1.38664 1.08313 1.19731 1.17543 1.24515 0.85098 0.90524 1.26070 0.95608 0.95692 1.03812 1.69671 1.23948 1.29439 1.32835 0.84858 0.78228 0.78264 0.76886 1.19920 1.19407 1.19343 1.16168 0.81206 0.85745 0.77916 1.90957 1.77490 1.20661 1.56923 0.90423 0.91645 0.86662 0.83091 0.82041 0.87701 0.86893 0.93046 0.93506 0.87434 0.87119 0.76721 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.17 127.77 1.43 2.40 16 2 N -0.62 -9.54 3.42 -866.95 -2.96 -12.51 16 3 C 0.07 0.75 7.66 85.76 0.66 1.41 16 4 C 0.51 10.84 8.31 87.94 0.73 11.57 16 5 O -0.50 -13.76 17.76 -2.89 -0.05 -13.81 16 6 N -0.58 -14.37 2.60 -773.13 -2.01 -16.38 16 7 C 0.12 3.15 5.70 86.38 0.49 3.65 16 8 C -0.10 -3.39 4.83 30.59 0.15 -3.24 16 9 C -0.11 -4.01 5.70 29.85 0.17 -3.84 16 10 C 0.43 21.64 7.78 87.66 0.68 22.32 16 11 O -0.64 -37.52 15.56 -3.06 -0.05 -37.57 16 12 N -0.57 -30.41 5.29 -306.98 -1.62 -32.03 16 13 C -0.34 -19.95 9.68 84.04 0.81 -19.14 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 16 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 17 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 21 C 0.69 17.43 8.31 179.44 1.49 18.92 16 22 O -0.58 -19.54 17.15 -3.84 -0.07 -19.61 16 23 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.06 0.82 8.04 -2.38 -0.02 0.80 16 25 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 2.53 7.85 -2.39 -0.02 2.51 16 29 H 0.11 2.49 8.00 -2.39 -0.02 2.47 16 30 H 0.05 1.93 8.10 -2.38 -0.02 1.92 16 31 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.40 19.96 7.90 -92.71 -0.73 19.22 16 35 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -82.82 312.66 3.01 -79.81 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.39 Total: 22.52 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 7.08 Total: 33.87 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -6.32 Total: -111.08 kcal Atomic # 8 Polarization: -70.83 SS G_CDS: -0.16 Total: -70.99 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -82.82 3.01 -79.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701335310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.454 kcal (2) G-P(sol) polarization free energy of solvation -82.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds