Wall clock time and date at job start Mon Mar 30 2020 00:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.34765 * 124.17981 * 90.02589 * 16 15 13 18 18 O 1.21236 * 127.15719 * 359.92083 * 17 16 15 19 19 C 1.51586 * 105.68506 * 179.97438 * 17 16 15 20 20 N 1.47306 * 103.59409 * 359.97438 * 19 17 16 21 21 C 1.46503 * 126.69305 * 179.97438 * 20 19 17 22 22 C 1.33795 * 124.17576 * 269.71497 * 16 15 13 23 23 O 1.21543 * 123.76953 * 0.04717 * 22 16 15 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 29 29 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 30 30 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 31 31 H 1.09002 * 110.59644 * 118.52540 * 19 17 16 32 32 H 1.09001 * 110.59650 * 241.46783 * 19 17 16 33 33 H 1.09006 * 109.46856 * 90.00077 * 21 20 19 34 34 H 1.08991 * 109.47449 * 209.99775 * 21 20 19 35 35 H 1.09000 * 109.47176 * 330.00371 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 7 2.6982 0.2129 4.7091 17 6 1.6766 0.4291 5.5610 18 8 0.5848 -0.0977 5.5436 19 6 2.1760 1.4689 6.5445 20 7 3.5501 1.7432 6.0903 21 6 4.4998 2.6827 6.6918 22 6 3.7645 0.9598 5.0178 23 8 4.8089 0.9359 4.3965 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 2.2490 -1.6317 1.1528 29 1 1.9772 -1.5505 3.8327 30 1 3.6488 -1.1203 3.3982 31 1 1.5667 2.3711 6.4909 32 1 2.1802 1.0673 7.5578 33 1 5.0867 2.1686 7.4531 34 1 5.1651 3.0705 5.9206 35 1 3.9541 3.5078 7.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706271727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:36 Heat of formation + Delta-G solvation = -67.952244 kcal Electronic energy + Delta-G solvation = -20813.608581 eV Core-core repulsion = 17427.273354 eV Total energy + Delta-G solvation = -3386.335227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.34008 -38.85150 -38.56956 -36.18901 -35.32499 -34.60717 -32.43187 -30.49327 -29.00540 -27.26405 -26.21130 -25.24168 -22.51740 -21.68566 -20.23240 -19.49820 -17.84755 -17.54159 -16.81160 -16.63740 -15.78412 -15.52922 -15.20743 -14.89496 -14.47165 -14.45960 -14.21102 -14.01434 -13.69640 -12.99601 -12.76952 -12.64692 -12.43306 -12.16335 -11.63379 -11.10884 -10.95164 -10.93490 -10.73198 -10.31985 -10.26943 -10.24019 -10.20579 -9.21158 -9.04869 -8.93346 -8.55768 -7.95992 -6.11758 -4.21136 1.62604 1.95192 2.82341 3.02116 3.24600 3.26332 3.32748 3.35719 3.90608 4.07752 4.38288 4.53097 4.78823 4.93364 5.09799 5.18351 5.20742 5.24368 5.31516 5.42047 5.57100 5.74762 6.26285 6.82615 6.96546 7.05156 7.14664 7.31873 7.41938 7.53687 7.68609 7.90505 8.04414 8.14332 8.59868 8.76241 9.04485 9.46088 10.94417 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.004334 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.258128 B = 6459.100331 C = 6792.793664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.490 3.510 14 O -0.546 6.546 15 C 0.097 3.903 16 N -0.558 5.558 17 C 0.527 3.473 18 O -0.469 6.469 19 C 0.068 3.932 20 N -0.632 5.632 21 C 0.123 3.877 22 C 0.705 3.295 23 O -0.537 6.537 24 H 0.027 0.973 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.391 0.609 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -0.635 19.440 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.351 5.351 13 C 0.273 3.727 14 O -0.425 6.425 15 C -0.029 4.029 16 N -0.302 5.302 17 C 0.314 3.686 18 O -0.338 6.338 19 C -0.059 4.059 20 N -0.372 5.372 21 C -0.018 4.018 22 C 0.408 3.592 23 O -0.410 6.410 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.894 0.089 18.953 19.349 hybrid contribution 0.324 -0.839 -0.941 1.302 sum 4.218 -0.750 18.011 18.514 Atomic orbital electron populations 1.22070 0.98307 0.99208 1.00899 1.18788 0.91097 0.94009 0.79786 0.93367 1.21247 1.32496 1.13185 0.90230 0.91893 1.24894 0.94799 0.94942 0.99105 1.69915 1.35970 1.22432 1.23799 0.86370 0.78600 0.79505 0.82483 1.19687 1.20870 1.20876 1.46451 1.64797 1.13619 1.10219 1.20481 0.79309 0.87957 0.84998 1.90672 1.51038 1.15839 1.84916 1.21588 1.05612 0.91185 0.84478 1.45820 1.15114 1.40426 1.28860 1.20808 0.83745 0.82215 0.81839 1.90820 1.19421 1.51342 1.72237 1.22462 0.84053 0.99940 0.99400 1.47400 1.14802 1.43754 1.31289 1.21488 0.91283 0.90653 0.98359 1.15761 0.83381 0.79103 0.80990 1.90986 1.26397 1.68799 1.54838 0.95343 0.96694 0.89120 0.92616 0.77690 0.86238 0.86023 0.86001 0.86177 0.92128 0.89924 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.90 2.56 -69.08 -0.18 6.73 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.33 8.72 -34.44 -0.30 -14.63 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.79 5.31 -17.82 -0.09 1.70 16 7 N -0.88 -25.27 11.33 55.43 0.63 -24.64 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.70 -14.90 5.07 -54.93 -0.28 -15.18 16 13 C 0.49 10.14 7.86 -10.99 -0.09 10.06 16 14 O -0.55 -13.64 16.09 5.55 0.09 -13.55 16 15 C 0.10 1.47 6.18 -5.19 -0.03 1.43 16 16 N -0.56 -8.46 2.09 -122.02 -0.26 -8.71 16 17 C 0.53 7.17 8.32 -10.55 -0.09 7.09 16 18 O -0.47 -7.59 17.76 5.60 0.10 -7.49 16 19 C 0.07 0.59 7.66 -4.32 -0.03 0.56 16 20 N -0.63 -6.87 3.42 -187.94 -0.64 -7.51 16 21 C 0.12 0.88 11.17 59.85 0.67 1.55 16 22 C 0.71 10.84 8.31 -88.01 -0.73 10.10 16 23 O -0.54 -10.05 17.15 5.33 0.09 -9.96 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 2.50 6.08 -51.93 -0.32 2.19 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 29 H 0.12 1.48 8.00 -51.93 -0.42 1.07 16 30 H 0.12 1.62 7.85 -51.94 -0.41 1.21 16 31 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -36.71 310.11 -5.52 -42.23 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.38 Total: 3.08 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: -0.53 Total: 21.19 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.55 Total: -56.04 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: 0.28 Total: -31.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.71 -5.52 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706271727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.719 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds