Wall clock time and date at job start Mon Mar 30 2020 00:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.34765 * 124.17981 * 90.02589 * 16 15 13 18 18 O 1.21236 * 127.15719 * 359.92083 * 17 16 15 19 19 C 1.51586 * 105.68506 * 179.97438 * 17 16 15 20 20 N 1.47306 * 103.59409 * 359.97438 * 19 17 16 21 21 C 1.46503 * 126.69305 * 179.97438 * 20 19 17 22 22 C 1.33795 * 124.17576 * 269.71497 * 16 15 13 23 23 O 1.21543 * 123.76953 * 0.04717 * 22 16 15 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 29 29 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 30 30 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 31 31 H 1.09002 * 110.59644 * 118.52540 * 19 17 16 32 32 H 1.09001 * 110.59650 * 241.46783 * 19 17 16 33 33 H 1.09006 * 109.46856 * 90.00077 * 21 20 19 34 34 H 1.08991 * 109.47449 * 209.99775 * 21 20 19 35 35 H 1.09000 * 109.47176 * 330.00371 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 7 2.6982 0.2129 4.7091 17 6 1.6766 0.4291 5.5610 18 8 0.5848 -0.0977 5.5436 19 6 2.1760 1.4689 6.5445 20 7 3.5501 1.7432 6.0903 21 6 4.4998 2.6827 6.6918 22 6 3.7645 0.9598 5.0178 23 8 4.8089 0.9359 4.3965 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 2.2490 -1.6317 1.1528 29 1 1.9772 -1.5505 3.8327 30 1 3.6488 -1.1203 3.3982 31 1 1.5667 2.3711 6.4909 32 1 2.1802 1.0673 7.5578 33 1 5.0867 2.1686 7.4531 34 1 5.1651 3.0705 5.9206 35 1 3.9541 3.5078 7.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706271727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:36 Heat of formation + Delta-G solvation = -96.503515 kcal Electronic energy + Delta-G solvation = -20814.846657 eV Core-core repulsion = 17427.273354 eV Total energy + Delta-G solvation = -3387.573303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.40016 -40.53683 -39.71842 -37.29348 -36.92142 -36.06649 -34.40432 -31.84041 -30.48158 -28.41704 -27.38277 -27.12006 -23.65394 -23.29102 -21.66842 -21.09207 -19.36693 -18.64262 -18.17455 -17.79583 -17.35276 -17.14804 -16.62312 -16.15831 -15.91865 -15.73994 -15.45435 -15.05538 -15.00251 -14.51680 -14.38771 -13.85972 -13.44881 -13.37647 -13.23751 -13.03023 -12.85689 -12.77226 -12.31605 -12.14170 -12.07063 -11.62101 -11.37598 -11.13983 -10.68816 -10.56971 -9.96909 -9.85742 -8.20088 -6.38069 0.59086 0.94530 1.43761 1.44712 1.57064 1.62446 1.82013 2.04143 2.34936 2.59364 3.01837 3.10661 3.68241 3.79627 4.10063 4.16705 4.24797 4.33832 4.36409 4.69324 4.70074 4.86946 4.89570 4.97434 5.04151 5.37012 5.39998 5.55163 5.62601 5.84330 6.02535 6.04821 6.29612 6.69053 6.80332 6.96679 7.27433 7.43329 8.86825 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.004334 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.258128 B = 6459.100331 C = 6792.793664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.698 5.698 13 C 0.483 3.517 14 O -0.595 6.595 15 C 0.105 3.895 16 N -0.568 5.568 17 C 0.517 3.483 18 O -0.501 6.501 19 C 0.079 3.921 20 N -0.622 5.622 21 C 0.115 3.885 22 C 0.692 3.308 23 O -0.584 6.584 24 H 0.044 0.956 25 H 0.008 0.992 26 H 0.067 0.933 27 H 0.266 0.734 28 H 0.410 0.590 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -1.726 21.137 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.347 5.347 13 C 0.269 3.731 14 O -0.477 6.477 15 C -0.020 4.020 16 N -0.312 5.312 17 C 0.307 3.693 18 O -0.373 6.373 19 C -0.046 4.046 20 N -0.361 5.361 21 C -0.024 4.024 22 C 0.394 3.606 23 O -0.461 6.461 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.187 0.813 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.405 -1.017 20.721 21.209 hybrid contribution 0.154 -0.423 -1.398 1.468 sum 4.559 -1.440 19.323 19.906 Atomic orbital electron populations 1.21878 0.98103 0.99637 0.99393 1.18378 0.91221 0.91807 0.81879 0.98765 1.21575 1.32714 1.13584 0.90619 0.90532 1.25841 0.94827 0.95557 1.02465 1.70065 1.37092 1.23953 1.24624 0.85239 0.78103 0.78491 0.78147 1.18199 1.20267 1.21053 1.46181 1.64762 1.14439 1.09359 1.21461 0.77969 0.87548 0.86152 1.90638 1.52964 1.18206 1.85844 1.21572 1.07057 0.91214 0.82145 1.46028 1.15840 1.40553 1.28805 1.21659 0.82945 0.82563 0.82156 1.90802 1.20460 1.52792 1.73227 1.22751 0.82579 0.99373 0.99871 1.47685 1.16034 1.42613 1.29736 1.21824 0.91269 0.91251 0.98074 1.16098 0.82844 0.79705 0.81923 1.90943 1.28030 1.70425 1.56686 0.93728 0.97305 0.91440 0.92510 0.75458 0.83105 0.84042 0.83578 0.81277 0.89857 0.91953 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.52 2.56 44.25 0.11 14.64 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.37 16 4 C -0.55 -29.51 8.72 25.60 0.22 -29.29 16 5 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 6 C 0.01 0.71 5.31 84.65 0.45 1.16 16 7 N -0.92 -53.77 11.33 21.45 0.24 -53.52 16 8 Si 0.98 42.61 29.54 68.60 2.03 44.64 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 N -0.70 -29.84 5.07 -446.09 -2.26 -32.11 16 13 C 0.48 20.30 7.86 87.66 0.69 20.99 16 14 O -0.59 -30.79 16.09 -3.04 -0.05 -30.84 16 15 C 0.11 3.11 6.18 85.63 0.53 3.64 16 16 N -0.57 -16.70 2.09 -777.21 -1.63 -18.32 16 17 C 0.52 13.21 8.32 87.94 0.73 13.94 16 18 O -0.50 -15.64 17.76 -2.89 -0.05 -15.69 16 19 C 0.08 1.09 7.66 85.76 0.66 1.75 16 20 N -0.62 -12.00 3.42 -866.95 -2.96 -14.96 16 21 C 0.11 1.33 11.17 127.77 1.43 2.76 16 22 C 0.69 20.74 8.31 179.44 1.49 22.23 16 23 O -0.58 -22.09 17.15 -3.85 -0.07 -22.16 16 24 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 3.85 6.08 -2.38 -0.01 3.84 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.41 14.20 8.54 -92.71 -0.79 13.41 16 29 H 0.15 3.47 8.00 -2.39 -0.02 3.45 16 30 H 0.14 3.61 7.85 -2.39 -0.02 3.59 16 31 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 1.01 8.03 -2.39 -0.02 0.99 16 35 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -84.15 310.11 2.56 -81.59 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.33 Total: 15.77 kcal Atomic # 6 Polarization: 38.62 SS G_CDS: 6.98 Total: 45.60 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -6.61 Total: -118.91 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: -0.17 Total: -68.69 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -84.15 2.56 -81.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706271727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.913 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds