Wall clock time and date at job start Mon Mar 30 2020 00:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21279 * 120.00033 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 N 1.46497 * 109.47370 * 180.02562 * 15 13 12 17 17 C 1.34769 * 124.17876 * 90.02143 * 16 15 13 18 18 O 1.21238 * 127.15711 * 359.93640 * 17 16 15 19 19 C 1.51581 * 105.68590 * 179.97438 * 17 16 15 20 20 N 1.47314 * 103.59240 * 0.02562 * 19 17 16 21 21 C 1.46509 * 126.68710 * 180.02562 * 20 19 17 22 22 C 1.33793 * 124.17994 * 269.72320 * 16 15 13 23 23 O 1.21544 * 123.76768 * 0.04293 * 22 16 15 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 29 29 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 30 30 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 31 31 H 1.09006 * 110.59567 * 118.52590 * 19 17 16 32 32 H 1.08997 * 110.60563 * 241.47088 * 19 17 16 33 33 H 1.09001 * 109.46955 * 89.99317 * 21 20 19 34 34 H 1.08998 * 109.46778 * 209.99506 * 21 20 19 35 35 H 1.08996 * 109.46918 * 329.99223 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6987 0.2124 -4.7090 17 6 3.7720 0.9671 -5.0168 18 8 4.8376 0.9949 -4.4392 19 6 3.3695 1.7748 -6.2347 20 7 1.9861 1.3411 -6.4960 21 6 1.1101 1.8107 -7.5723 22 6 1.6864 0.4251 -5.5576 23 8 0.6142 -0.1429 -5.4859 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9035 -0.5277 4.4376 28 1 2.2490 -1.6319 -1.1526 29 1 3.6479 -1.1215 -3.3986 30 1 1.9759 -1.5508 -3.8326 31 1 3.4014 2.8420 -6.0148 32 1 4.0127 1.5375 -7.0821 33 1 1.2430 1.1790 -8.4506 34 1 0.0721 1.7620 -7.2433 35 1 1.3635 2.8406 -7.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706271728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:38 Heat of formation + Delta-G solvation = -59.542729 kcal Electronic energy + Delta-G solvation = -20896.350010 eV Core-core repulsion = 17510.379448 eV Total energy + Delta-G solvation = -3385.970563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.41519 -39.04880 -38.64443 -36.26274 -35.47612 -34.77424 -32.44933 -30.80106 -29.62176 -27.47448 -26.33100 -25.16701 -22.58956 -21.83888 -20.29145 -19.68827 -17.95423 -17.61024 -16.89389 -16.77101 -15.91211 -15.85531 -15.31551 -15.03885 -14.57074 -14.55039 -14.28315 -14.11010 -13.74580 -13.02999 -13.01520 -12.82882 -12.70761 -12.26255 -12.19367 -11.78102 -11.24614 -11.01051 -10.81707 -10.35970 -10.32252 -10.18454 -9.69453 -9.28620 -9.24085 -9.05457 -8.76469 -8.21645 -6.20911 -4.23575 1.56609 1.87624 2.74925 2.93932 3.08591 3.24245 3.35846 3.40743 3.82376 3.94248 4.32054 4.46584 4.73466 4.87517 5.02196 5.11295 5.13946 5.14318 5.21267 5.35377 5.44718 5.67428 6.19142 6.31378 6.38113 6.56222 6.85166 6.97650 7.15643 7.24487 7.26825 7.49861 7.95193 8.10443 8.47689 8.72811 8.84340 9.39609 10.91179 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004655 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.180336 B = 6013.366210 C = 6268.664377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.492 3.508 14 O -0.548 6.548 15 C 0.098 3.902 16 N -0.559 5.559 17 C 0.526 3.474 18 O -0.466 6.466 19 C 0.067 3.933 20 N -0.632 5.632 21 C 0.123 3.877 22 C 0.706 3.294 23 O -0.539 6.539 24 H 0.047 0.953 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.268 0.732 28 H 0.397 0.603 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 2.992 -22.478 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.343 5.343 13 C 0.275 3.725 14 O -0.426 6.426 15 C -0.027 4.027 16 N -0.303 5.303 17 C 0.313 3.687 18 O -0.335 6.335 19 C -0.059 4.059 20 N -0.372 5.372 21 C -0.018 4.018 22 C 0.408 3.592 23 O -0.412 6.412 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.884 3.540 -21.977 22.278 hybrid contribution -0.496 0.318 0.379 0.700 sum 0.389 3.858 -21.598 21.944 Atomic orbital electron populations 1.22446 0.99149 1.00986 0.99323 1.19131 0.90222 0.94655 0.82559 0.93390 1.21025 1.33353 1.14488 0.88461 0.90060 1.24819 0.95460 0.96674 0.95502 1.69863 1.44826 1.40115 0.98044 0.86877 0.80563 0.83631 0.77419 1.20253 1.22106 1.18768 1.46099 1.64852 1.13911 1.09482 1.20546 0.79081 0.87895 0.84964 1.90668 1.51050 1.15919 1.84954 1.21553 1.05638 0.91520 0.84034 1.45827 1.15382 1.40808 1.28324 1.20819 0.83358 0.79380 0.85121 1.90837 1.23040 1.63908 1.55690 1.22473 0.84148 1.01765 0.97482 1.47404 1.14884 1.43164 1.31740 1.21493 0.93906 0.99382 0.87013 1.15753 0.83453 0.80558 0.79430 1.90980 1.22492 1.53132 1.74616 0.93425 0.94553 0.92672 0.92255 0.76892 0.85901 0.85853 0.85978 0.86097 0.92077 0.89957 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.97 37.16 0.33 -3.38 16 2 C 0.24 5.80 2.15 -69.08 -0.15 5.65 16 3 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 4 C -0.54 -14.61 9.31 -34.44 -0.32 -14.93 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 8 Si 0.89 22.12 24.37 -169.99 -4.14 17.98 16 9 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.69 -13.97 5.07 -54.93 -0.28 -14.24 16 13 C 0.49 9.58 7.86 -10.99 -0.09 9.50 16 14 O -0.55 -12.81 16.09 5.56 0.09 -12.72 16 15 C 0.10 1.40 6.18 -5.20 -0.03 1.36 16 16 N -0.56 -8.02 2.09 -122.03 -0.26 -8.27 16 17 C 0.53 6.86 8.32 -10.56 -0.09 6.77 16 18 O -0.47 -7.37 17.76 5.59 0.10 -7.27 16 19 C 0.07 0.55 7.66 -4.32 -0.03 0.52 16 20 N -0.63 -6.39 3.42 -187.94 -0.64 -7.03 16 21 C 0.12 0.80 11.17 59.85 0.67 1.46 16 22 C 0.71 10.19 8.31 -88.03 -0.73 9.46 16 23 O -0.54 -9.49 17.15 5.33 0.09 -9.40 16 24 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.40 6.78 8.54 -40.82 -0.35 6.43 16 29 H 0.12 1.46 8.00 -51.93 -0.42 1.04 16 30 H 0.12 1.50 7.86 -51.93 -0.41 1.09 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -37.36 303.28 -4.47 -41.83 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.24 Total: 1.81 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: -0.54 Total: 18.55 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.40 Total: -55.36 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: 0.28 Total: -29.38 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -37.36 -4.47 -41.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706271728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.711 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds