Wall clock time and date at job start Mon Mar 30 2020 00:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21279 * 120.00033 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 N 1.46497 * 109.47370 * 180.02562 * 15 13 12 17 17 C 1.34769 * 124.17876 * 90.02143 * 16 15 13 18 18 O 1.21238 * 127.15711 * 359.93640 * 17 16 15 19 19 C 1.51581 * 105.68590 * 179.97438 * 17 16 15 20 20 N 1.47314 * 103.59240 * 0.02562 * 19 17 16 21 21 C 1.46509 * 126.68710 * 180.02562 * 20 19 17 22 22 C 1.33793 * 124.17994 * 269.72320 * 16 15 13 23 23 O 1.21544 * 123.76768 * 0.04293 * 22 16 15 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 29 29 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 30 30 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 31 31 H 1.09006 * 110.59567 * 118.52590 * 19 17 16 32 32 H 1.08997 * 110.60563 * 241.47088 * 19 17 16 33 33 H 1.09001 * 109.46955 * 89.99317 * 21 20 19 34 34 H 1.08998 * 109.46778 * 209.99506 * 21 20 19 35 35 H 1.08996 * 109.46918 * 329.99223 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6987 0.2124 -4.7090 17 6 3.7720 0.9671 -5.0168 18 8 4.8376 0.9949 -4.4392 19 6 3.3695 1.7748 -6.2347 20 7 1.9861 1.3411 -6.4960 21 6 1.1101 1.8107 -7.5723 22 6 1.6864 0.4251 -5.5576 23 8 0.6142 -0.1429 -5.4859 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9035 -0.5277 4.4376 28 1 2.2490 -1.6319 -1.1526 29 1 3.6479 -1.1215 -3.3986 30 1 1.9759 -1.5508 -3.8326 31 1 3.4014 2.8420 -6.0148 32 1 4.0127 1.5375 -7.0821 33 1 1.2430 1.1790 -8.4506 34 1 0.0721 1.7620 -7.2433 35 1 1.3635 2.8406 -7.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706271728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:38 Heat of formation + Delta-G solvation = -89.715526 kcal Electronic energy + Delta-G solvation = -20897.658401 eV Core-core repulsion = 17510.379448 eV Total energy + Delta-G solvation = -3387.278953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.40703 -40.63877 -39.72375 -37.29043 -37.05256 -36.08495 -34.47423 -32.33797 -30.79746 -28.50150 -27.29377 -27.11780 -23.68139 -23.33698 -21.68247 -21.14353 -19.46880 -18.64691 -18.37306 -17.79310 -17.50617 -17.37510 -16.60812 -16.18855 -15.99531 -15.78831 -15.46206 -15.06019 -15.03902 -14.92471 -14.44602 -14.17884 -13.83575 -13.50351 -13.42370 -13.25754 -13.06807 -12.83362 -12.18753 -12.07193 -11.75380 -11.55585 -11.37656 -11.33432 -10.90608 -10.64260 -9.99676 -9.96897 -8.40734 -6.46777 0.59023 0.93766 1.24645 1.32732 1.42039 1.55204 1.80059 2.03097 2.23442 2.43890 2.95115 3.01725 3.67764 3.71347 4.10785 4.15872 4.24675 4.30701 4.36713 4.39712 4.51128 4.65081 4.69613 4.90084 4.92848 4.97337 5.26339 5.36499 5.39988 5.54662 6.02229 6.08429 6.29540 6.54017 6.71712 6.95938 7.13672 7.30733 8.74385 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004655 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.180336 B = 6013.366210 C = 6268.664377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.020 0.980 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.290 1.290 11 H -0.267 1.267 12 N -0.693 5.693 13 C 0.488 3.512 14 O -0.589 6.589 15 C 0.104 3.896 16 N -0.568 5.568 17 C 0.516 3.484 18 O -0.502 6.502 19 C 0.079 3.921 20 N -0.622 5.622 21 C 0.115 3.885 22 C 0.694 3.306 23 O -0.582 6.582 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.271 0.729 28 H 0.412 0.588 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 3.847 -24.883 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.038 0.962 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.217 1.217 11 H -0.192 1.192 12 N -0.343 5.343 13 C 0.274 3.726 14 O -0.470 6.470 15 C -0.021 4.021 16 N -0.313 5.313 17 C 0.306 3.694 18 O -0.373 6.373 19 C -0.046 4.046 20 N -0.360 5.360 21 C -0.024 4.024 22 C 0.396 3.604 23 O -0.459 6.459 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.248 0.752 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.774 4.395 -24.441 24.845 hybrid contribution -0.391 0.044 1.060 1.131 sum 0.383 4.439 -23.381 23.802 Atomic orbital electron populations 1.22335 0.97816 1.01825 0.99213 1.18776 0.91177 0.93109 0.83157 0.96226 1.21226 1.32533 1.13741 0.89714 0.92064 1.25515 0.96755 0.99200 0.95353 1.69961 1.46477 1.41843 0.98656 0.86033 0.79926 0.80443 0.77129 1.18438 1.21677 1.19237 1.45919 1.64981 1.14595 1.08810 1.21413 0.77819 0.87513 0.85859 1.90635 1.52733 1.17927 1.85736 1.21560 1.07190 0.91478 0.81880 1.46032 1.16070 1.41079 1.28080 1.21675 0.82477 0.79135 0.86111 1.90818 1.24246 1.65009 1.57267 1.22745 0.83378 1.01913 0.96550 1.47684 1.15979 1.41364 1.31008 1.21823 0.92471 1.01803 0.86303 1.16058 0.82912 0.81253 0.80205 1.90940 1.24021 1.55021 1.75898 0.93966 0.94140 0.91343 0.91944 0.75158 0.83432 0.83638 0.83506 0.81442 0.89997 0.91765 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.97 8.97 71.98 0.65 -6.33 16 2 C 0.24 11.87 2.15 44.25 0.10 11.96 16 3 H 0.02 1.09 6.63 -2.39 -0.02 1.07 16 4 C -0.53 -29.47 9.31 25.60 0.24 -29.23 16 5 H 0.06 3.55 7.98 -2.91 -0.02 3.53 16 6 C 0.03 1.82 5.45 84.66 0.46 2.28 16 7 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 8 Si 0.94 45.54 24.37 68.60 1.67 47.21 16 9 H -0.26 -11.80 6.87 99.48 0.68 -11.12 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 11 H -0.27 -13.10 6.53 99.48 0.65 -12.45 16 12 N -0.69 -27.75 5.07 -446.10 -2.26 -30.01 16 13 C 0.49 18.88 7.86 87.66 0.69 19.57 16 14 O -0.59 -27.71 16.09 -3.03 -0.05 -27.76 16 15 C 0.10 2.86 6.18 85.63 0.53 3.39 16 16 N -0.57 -15.55 2.09 -777.22 -1.63 -17.18 16 17 C 0.52 12.50 8.32 87.94 0.73 13.23 16 18 O -0.50 -15.34 17.76 -2.90 -0.05 -15.39 16 19 C 0.08 0.98 7.66 85.76 0.66 1.64 16 20 N -0.62 -10.78 3.42 -866.95 -2.96 -13.74 16 21 C 0.12 1.12 11.17 127.77 1.43 2.55 16 22 C 0.69 19.08 8.31 179.44 1.49 20.57 16 23 O -0.58 -20.24 17.15 -3.85 -0.07 -20.31 16 24 H 0.04 1.94 3.27 -2.39 -0.01 1.93 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.41 13.89 8.54 -92.71 -0.79 13.10 16 29 H 0.15 3.29 8.00 -2.39 -0.02 3.27 16 30 H 0.15 3.34 7.86 -2.39 -0.02 3.32 16 31 H 0.15 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.90 8.04 -2.39 -0.02 0.88 16 35 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -83.17 303.28 2.18 -80.99 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.26 Total: 12.31 kcal Atomic # 6 Polarization: 32.68 SS G_CDS: 6.97 Total: 39.65 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -6.55 Total: -116.71 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -0.17 Total: -63.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -83.17 2.18 -80.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706271728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.723 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds