Wall clock time and date at job start Mon Mar 30 2020 00:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.08002 * 119.99695 * 159.15356 * 3 2 1 5 5 C 1.38814 * 120.00203 * 339.42517 * 3 2 1 6 6 N 1.31622 * 119.99766 * 347.70754 * 5 3 2 7 7 Si 1.86799 * 120.00051 * 167.70590 * 5 3 2 8 8 H 1.48494 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46948 * 120.00006 * 7 5 3 10 10 H 1.48498 * 109.46943 * 240.00000 * 7 5 3 11 11 C 1.46493 * 120.00450 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46999 * 269.99930 * 11 2 1 13 13 N 1.29950 * 126.29059 * 90.02567 * 12 11 2 14 14 O 1.21293 * 110.25413 * 179.97438 * 13 12 11 15 15 C 1.33647 * 109.81239 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.55217 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.46680 * 269.97717 * 16 15 14 18 18 C 1.52998 * 109.46652 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47085 * 179.97438 * 18 17 16 20 20 O 1.20827 * 119.99866 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00441 * 179.97438 * 19 18 17 22 22 N 1.31134 * 106.89416 * 359.77233 * 15 14 13 23 23 H 1.09000 * 109.47250 * 84.89593 * 1 2 3 24 24 H 1.09001 * 109.46544 * 204.89893 * 1 2 3 25 25 H 1.09002 * 109.47318 * 324.89194 * 1 2 3 26 26 H 0.96997 * 120.00108 * 180.02562 * 6 5 3 27 27 H 1.09006 * 109.46974 * 29.99273 * 11 2 1 28 28 H 1.08990 * 109.47502 * 149.99624 * 11 2 1 29 29 H 1.08992 * 109.46772 * 29.97565 * 16 15 14 30 30 H 1.08995 * 109.46928 * 149.98031 * 16 15 14 31 31 H 1.08995 * 109.46965 * 300.00084 * 17 16 15 32 32 H 1.08995 * 109.47183 * 60.00471 * 17 16 15 33 33 H 1.09001 * 109.47460 * 300.00203 * 18 17 16 34 34 H 1.09004 * 109.47664 * 59.99932 * 18 17 16 35 35 H 0.96700 * 117.00512 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1767 1.2166 0.3329 5 6 1.5220 2.3498 -0.4225 6 7 0.3645 2.2842 -1.0457 7 14 2.3200 4.0089 -0.1065 8 1 3.6074 3.8112 0.6065 9 1 2.5703 4.6923 -1.4009 10 1 1.4162 4.8422 0.7266 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4201 13 7 1.6702 -2.4507 2.1448 14 8 2.1548 -2.6204 3.2436 15 6 3.3245 -1.9793 3.3268 16 6 4.2427 -1.9384 4.5210 17 6 3.8741 -0.7468 5.4071 18 6 4.8067 -0.7049 6.6193 19 6 4.4441 0.4691 7.4918 20 8 3.5329 1.1973 7.1766 21 8 5.1326 0.7052 8.6195 22 7 3.5231 -1.3971 2.1687 23 1 -0.3634 0.0914 -1.0236 24 1 -0.3632 -0.9322 0.4327 25 1 -0.3634 0.8407 0.5910 26 1 -0.0740 3.0974 -1.3412 27 1 1.6085 -2.0281 -0.5147 28 1 3.1499 -1.1381 -0.5143 29 1 4.1382 -2.8613 5.0913 30 1 5.2738 -1.8347 4.1832 31 1 3.9785 0.1761 4.8367 32 1 2.8430 -0.8505 5.7450 33 1 4.7027 -1.6279 7.1898 34 1 5.8377 -0.6011 6.2812 35 1 4.8630 1.4698 9.1466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737385466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:20 Heat of formation + Delta-G solvation = -9.062147 kcal Electronic energy + Delta-G solvation = -20150.953658 eV Core-core repulsion = 16767.172097 eV Total energy + Delta-G solvation = -3383.781560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.98783 -40.47358 -36.60507 -36.18983 -35.67062 -34.50606 -32.20698 -30.98960 -28.66166 -27.10798 -25.81162 -24.10053 -23.08245 -21.69155 -21.00864 -20.30968 -18.31078 -17.55068 -17.17465 -16.66333 -16.63227 -16.48079 -15.02490 -14.90561 -14.68777 -13.77951 -13.54601 -13.41165 -13.26338 -12.94683 -12.66242 -11.99317 -11.85500 -11.75660 -11.60505 -11.32344 -11.11501 -11.02307 -10.83247 -10.80447 -10.70674 -10.49313 -10.31106 -9.97588 -9.92050 -9.33928 -8.58506 -6.91987 -5.74943 -3.22069 1.64415 1.97485 2.69937 2.91633 3.24064 3.39305 3.46496 3.50273 4.13555 4.49093 4.51951 4.64308 4.72994 4.78202 5.08207 5.15251 5.22578 5.32082 5.44643 5.61492 5.67620 5.79311 6.01851 6.22074 6.26047 6.38428 6.49568 6.65127 6.77909 7.39015 7.63685 7.70673 7.84743 8.33409 8.79491 9.19722 9.79712 10.26162 11.30430 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.005154 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.188923 B = 5431.627191 C = 6851.994508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.258 4.258 4 H 0.075 0.925 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.228 3.772 12 C 0.174 3.826 13 N -0.393 5.393 14 O 0.062 5.938 15 C 0.151 3.849 16 C -0.017 4.017 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.475 3.525 20 O -0.508 6.508 21 O -0.521 6.521 22 N -0.463 5.463 23 H 0.037 0.963 24 H 0.000 1.000 25 H 0.045 0.955 26 H 0.253 0.747 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -9.130 16.233 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.387 4.387 4 H 0.093 0.907 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.097 3.903 12 C -0.102 4.102 13 N -0.103 5.103 14 O 0.007 5.993 15 C -0.071 4.071 16 C -0.056 4.056 17 C -0.151 4.151 18 C -0.147 4.147 19 C 0.317 3.683 20 O -0.395 6.395 21 O -0.334 6.334 22 N -0.197 5.197 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.235 -9.180 15.208 20.021 hybrid contribution 0.116 1.586 0.800 1.780 sum 9.351 -7.594 16.008 20.033 Atomic orbital electron populations 1.20910 0.81812 0.95872 0.99815 1.43969 1.02213 1.00090 1.84338 1.19338 0.97194 0.84753 1.37420 0.90715 1.24992 0.97428 0.98497 0.98436 1.70106 1.17240 1.26865 1.40995 0.86139 0.78762 0.83908 0.77522 1.20136 1.21537 1.21594 1.19183 0.98278 0.89444 0.83436 1.28153 0.85801 0.92973 1.03293 1.74590 1.21535 1.21506 0.92677 1.85214 1.30005 1.55895 1.28207 1.28538 0.88202 0.93205 0.97153 1.20003 0.96405 1.00338 0.88836 1.21461 1.00108 0.99169 0.94387 1.21312 1.02861 0.95339 0.95167 1.23517 0.79188 0.86063 0.79557 1.90802 1.29361 1.47936 1.71420 1.84517 1.60691 1.52266 1.35896 1.71909 1.25052 1.21154 1.01632 0.94493 0.98128 0.93595 0.93698 0.91422 0.90010 0.88257 0.87317 0.89494 0.90053 0.87155 0.87050 0.73095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.96 59.85 0.54 4.73 16 2 N -0.58 -15.50 2.91 -182.50 -0.53 -16.03 16 3 C -0.26 -7.37 9.69 -15.06 -0.15 -7.52 16 4 H 0.08 2.13 7.86 -52.49 -0.41 1.72 16 5 C 0.00 0.13 5.12 -17.43 -0.09 0.04 16 6 N -0.91 -27.03 10.53 55.49 0.58 -26.45 16 7 Si 0.91 22.69 29.57 -169.99 -5.03 17.66 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 C 0.23 5.06 6.27 -5.20 -0.03 5.03 16 12 C 0.17 3.70 7.80 -156.37 -1.22 2.48 16 13 N -0.39 -8.01 12.16 30.90 0.38 -7.63 16 14 O 0.06 1.08 11.31 18.09 0.20 1.29 16 15 C 0.15 2.34 7.77 -13.05 -0.10 2.24 16 16 C -0.02 -0.15 5.84 -27.88 -0.16 -0.32 16 17 C -0.11 -1.12 4.49 -26.73 -0.12 -1.24 16 18 C -0.11 -0.72 5.81 -27.89 -0.16 -0.88 16 19 C 0.47 4.50 8.33 36.00 0.30 4.80 16 20 O -0.51 -7.19 16.74 -18.75 -0.31 -7.50 16 21 O -0.52 -3.62 13.42 -39.25 -0.53 -4.15 16 22 N -0.46 -9.08 11.55 -9.87 -0.11 -9.19 16 23 H 0.04 1.01 7.41 -51.93 -0.38 0.62 16 24 H 0.00 0.00 8.03 -51.93 -0.42 -0.41 16 25 H 0.05 1.30 7.15 -51.93 -0.37 0.93 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 27 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.08 1.74 8.04 -51.93 -0.42 1.33 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 1.40 9.10 45.56 0.41 1.82 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -36.75 312.32 -5.51 -42.26 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.67 Total: -4.33 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.20 Total: 9.37 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.31 Total: -59.30 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.64 Total: -10.37 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.75 -5.51 -42.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737385466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.199 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds