Wall clock time and date at job start Mon Mar 30 2020 00:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.08002 * 119.99695 * 159.15356 * 3 2 1 5 5 C 1.38814 * 120.00203 * 339.42517 * 3 2 1 6 6 N 1.31622 * 119.99766 * 347.70754 * 5 3 2 7 7 Si 1.86799 * 120.00051 * 167.70590 * 5 3 2 8 8 H 1.48494 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46948 * 120.00006 * 7 5 3 10 10 H 1.48498 * 109.46943 * 240.00000 * 7 5 3 11 11 C 1.46493 * 120.00450 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46999 * 269.99930 * 11 2 1 13 13 N 1.29950 * 126.29059 * 90.02567 * 12 11 2 14 14 O 1.21293 * 110.25413 * 179.97438 * 13 12 11 15 15 C 1.33647 * 109.81239 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.55217 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.46680 * 269.97717 * 16 15 14 18 18 C 1.52998 * 109.46652 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47085 * 179.97438 * 18 17 16 20 20 O 1.20827 * 119.99866 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00441 * 179.97438 * 19 18 17 22 22 N 1.31134 * 106.89416 * 359.77233 * 15 14 13 23 23 H 1.09000 * 109.47250 * 84.89593 * 1 2 3 24 24 H 1.09001 * 109.46544 * 204.89893 * 1 2 3 25 25 H 1.09002 * 109.47318 * 324.89194 * 1 2 3 26 26 H 0.96997 * 120.00108 * 180.02562 * 6 5 3 27 27 H 1.09006 * 109.46974 * 29.99273 * 11 2 1 28 28 H 1.08990 * 109.47502 * 149.99624 * 11 2 1 29 29 H 1.08992 * 109.46772 * 29.97565 * 16 15 14 30 30 H 1.08995 * 109.46928 * 149.98031 * 16 15 14 31 31 H 1.08995 * 109.46965 * 300.00084 * 17 16 15 32 32 H 1.08995 * 109.47183 * 60.00471 * 17 16 15 33 33 H 1.09001 * 109.47460 * 300.00203 * 18 17 16 34 34 H 1.09004 * 109.47664 * 59.99932 * 18 17 16 35 35 H 0.96700 * 117.00512 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1767 1.2166 0.3329 5 6 1.5220 2.3498 -0.4225 6 7 0.3645 2.2842 -1.0457 7 14 2.3200 4.0089 -0.1065 8 1 3.6074 3.8112 0.6065 9 1 2.5703 4.6923 -1.4009 10 1 1.4162 4.8422 0.7266 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4201 13 7 1.6702 -2.4507 2.1448 14 8 2.1548 -2.6204 3.2436 15 6 3.3245 -1.9793 3.3268 16 6 4.2427 -1.9384 4.5210 17 6 3.8741 -0.7468 5.4071 18 6 4.8067 -0.7049 6.6193 19 6 4.4441 0.4691 7.4918 20 8 3.5329 1.1973 7.1766 21 8 5.1326 0.7052 8.6195 22 7 3.5231 -1.3971 2.1687 23 1 -0.3634 0.0914 -1.0236 24 1 -0.3632 -0.9322 0.4327 25 1 -0.3634 0.8407 0.5910 26 1 -0.0740 3.0974 -1.3412 27 1 1.6085 -2.0281 -0.5147 28 1 3.1499 -1.1381 -0.5143 29 1 4.1382 -2.8613 5.0913 30 1 5.2738 -1.8347 4.1832 31 1 3.9785 0.1761 4.8367 32 1 2.8430 -0.8505 5.7450 33 1 4.7027 -1.6279 7.1898 34 1 5.8377 -0.6011 6.2812 35 1 4.8630 1.4698 9.1466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737385466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:20 Heat of formation + Delta-G solvation = -37.304500 kcal Electronic energy + Delta-G solvation = -20152.178338 eV Core-core repulsion = 16767.172097 eV Total energy + Delta-G solvation = -3385.006241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.46800 -41.20085 -38.03043 -37.30751 -36.74815 -35.96280 -33.72882 -32.79884 -29.58869 -28.95429 -27.95886 -25.17557 -24.60583 -23.33062 -21.94056 -21.56886 -19.12341 -18.95210 -18.80397 -18.38448 -17.49788 -17.23450 -16.99596 -16.03431 -15.76990 -15.50748 -15.32871 -15.14691 -14.13568 -13.92611 -13.75711 -13.45761 -13.25986 -12.98615 -12.92168 -12.73844 -12.62070 -12.51649 -12.48227 -12.29806 -12.08801 -11.96549 -11.90270 -11.73961 -11.61718 -10.85576 -10.72204 -9.05112 -7.93283 -5.43242 0.30458 1.28261 1.32030 1.40916 1.42260 1.53366 1.96948 2.29149 2.44530 2.86549 3.17744 3.32082 3.63661 3.77853 3.99782 4.02512 4.18062 4.46974 4.55158 4.63771 4.69473 4.71668 4.74928 4.78190 4.96380 5.04946 5.18843 5.24562 5.28066 5.52711 5.60615 5.69556 6.19365 7.02247 7.03644 7.36344 7.68559 8.12126 9.11210 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.005154 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.188923 B = 5431.627191 C = 6851.994508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.603 5.603 3 C -0.265 4.265 4 H 0.070 0.930 5 C -0.047 4.047 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.293 1.293 11 C 0.230 3.770 12 C 0.155 3.845 13 N -0.409 5.409 14 O 0.071 5.929 15 C 0.172 3.828 16 C -0.013 4.013 17 C -0.109 4.109 18 C -0.100 4.100 19 C 0.476 3.524 20 O -0.568 6.568 21 O -0.513 6.513 22 N -0.499 5.499 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.015 0.985 26 H 0.251 0.749 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.222 -10.398 18.267 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.326 5.326 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.242 4.242 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.219 1.219 11 C 0.100 3.900 12 C -0.121 4.121 13 N -0.119 5.119 14 O 0.013 5.987 15 C -0.049 4.049 16 C -0.051 4.051 17 C -0.148 4.148 18 C -0.137 4.137 19 C 0.321 3.679 20 O -0.460 6.460 21 O -0.326 6.326 22 N -0.232 5.232 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 11.448 -10.478 17.262 23.213 hybrid contribution -0.481 1.890 0.326 1.977 sum 10.967 -8.588 17.588 22.436 Atomic orbital electron populations 1.20586 0.82168 0.95483 0.98269 1.44107 1.02299 1.01122 1.85058 1.19510 0.97146 0.85949 1.36849 0.91230 1.25747 0.98174 1.01659 0.98621 1.70240 1.18450 1.27428 1.42050 0.85178 0.77949 0.79767 0.77430 1.19414 1.20793 1.21941 1.19212 0.98193 0.88076 0.84504 1.27663 0.87034 0.94393 1.03054 1.74548 1.22006 1.21775 0.93545 1.85170 1.30694 1.55904 1.26906 1.29759 0.87364 0.90191 0.97592 1.20485 0.95884 1.02080 0.86627 1.21337 1.00323 0.97621 0.95546 1.21378 1.03063 0.95728 0.93499 1.24136 0.78032 0.85948 0.79776 1.90794 1.32090 1.50199 1.72868 1.84488 1.59900 1.52983 1.35207 1.71869 1.25239 1.22847 1.03280 0.96193 0.96113 0.96585 0.93961 0.89896 0.89716 0.83347 0.84729 0.93510 0.91878 0.83083 0.84148 0.71415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.63 8.96 127.77 1.15 10.78 16 2 N -0.60 -32.50 2.91 -731.31 -2.13 -34.63 16 3 C -0.26 -15.37 9.69 84.03 0.81 -14.56 16 4 H 0.07 4.03 7.86 -2.91 -0.02 4.01 16 5 C -0.05 -2.73 5.12 84.86 0.43 -2.30 16 6 N -0.94 -56.94 10.53 21.65 0.23 -56.71 16 7 Si 0.97 47.23 29.57 68.60 2.03 49.26 16 8 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 11 C 0.23 10.23 6.27 85.63 0.54 10.77 16 12 C 0.15 6.52 7.80 138.46 1.08 7.60 16 13 N -0.41 -16.37 12.16 -60.32 -0.73 -17.11 16 14 O 0.07 2.35 11.31 74.81 0.85 3.19 16 15 C 0.17 4.98 7.77 88.38 0.69 5.66 16 16 C -0.01 -0.18 5.84 29.85 0.17 0.00 16 17 C -0.11 -1.93 4.49 30.59 0.14 -1.80 16 18 C -0.10 -0.92 5.81 29.85 0.17 -0.75 16 19 C 0.48 8.11 8.33 71.24 0.59 8.70 16 20 O -0.57 -16.11 16.74 21.96 0.37 -15.75 16 21 O -0.51 -5.80 13.42 -51.41 -0.69 -6.49 16 22 N -0.50 -19.13 11.55 -303.18 -3.50 -22.63 16 23 H 0.02 1.12 7.41 -2.39 -0.02 1.10 16 24 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 25 H 0.02 0.91 7.15 -2.39 -0.02 0.89 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.08 3.36 8.07 -2.38 -0.02 3.34 16 28 H 0.08 3.65 8.04 -2.39 -0.02 3.63 16 29 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.42 2.11 9.10 -74.06 -0.67 1.43 16 Total: -1.00 -82.89 312.32 2.63 -80.26 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 0.44 Total: -3.51 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 5.78 Total: 24.10 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -6.14 Total: -131.07 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.52 Total: -19.04 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -82.89 2.63 -80.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737385466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.956 kcal (2) G-P(sol) polarization free energy of solvation -82.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds