Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99660 * 2 1 4 4 C 1.50702 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.29192 * 125.34910 * 0.02562 * 4 3 2 6 6 N 1.40269 * 107.86880 * 180.02562 * 5 4 3 7 7 C 1.46505 * 126.63811 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.46800 * 75.02346 * 7 6 5 9 9 C 1.36935 * 119.99841 * 89.99802 * 8 7 6 10 10 H 1.08002 * 120.00345 * 214.79615 * 9 8 7 11 11 C 1.38818 * 119.99696 * 34.80329 * 9 8 7 12 12 N 1.31621 * 120.00292 * 22.28473 * 11 9 8 13 13 Si 1.86805 * 119.99659 * 202.28174 * 11 9 8 14 14 H 1.48496 * 109.46951 * 60.00454 * 13 11 9 15 15 H 1.48504 * 109.46736 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47359 * 299.99938 * 13 11 9 17 17 C 1.46499 * 120.00005 * 270.00015 * 8 7 6 18 18 C 1.53001 * 117.49534 * 191.91181 * 17 8 7 19 19 C 1.52996 * 60.00309 * 252.51392 * 18 17 8 20 20 C 1.35029 * 106.72641 * 359.97438 * 6 5 4 21 21 O 1.21713 * 126.37526 * 179.97438 * 20 6 5 22 22 O 1.34315 * 107.25240 * 359.74447 * 20 6 5 23 23 H 1.08998 * 109.47489 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.47228 * 60.00940 * 1 2 3 25 25 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46783 * 299.99847 * 3 2 1 27 27 H 1.08996 * 109.47505 * 59.99723 * 3 2 1 28 28 H 1.08997 * 109.47275 * 195.02077 * 7 6 5 29 29 H 1.09001 * 109.47204 * 315.03149 * 7 6 5 30 30 H 0.96993 * 120.00182 * 174.51498 * 12 11 9 31 31 H 1.08997 * 115.55204 * 337.62013 * 17 8 7 32 32 H 1.08991 * 117.50121 * 0.02562 * 18 17 8 33 33 H 1.09005 * 117.49286 * 145.02360 * 18 17 8 34 34 H 1.08999 * 117.50435 * 252.51690 * 19 18 17 35 35 H 1.09003 * 117.51897 * 107.48225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.1745 0.0772 0.0006 6 7 5.5415 0.3917 0.0019 7 6 6.6571 -0.5579 0.0029 8 7 6.7987 -1.1462 -1.3314 9 6 7.6078 -0.5487 -2.2607 10 1 7.3378 -0.5714 -3.3061 11 6 8.7751 0.0862 -1.8589 12 7 9.3389 -0.2359 -0.7140 13 14 9.5457 1.3976 -2.9432 14 1 8.5809 2.5097 -3.1366 15 1 10.7763 1.9166 -2.2937 16 1 9.8931 0.8087 -4.2614 17 6 6.0748 -2.3736 -1.6714 18 6 6.4696 -3.0915 -2.9636 19 6 5.1441 -2.3315 -2.8851 20 6 5.6303 1.7391 0.0021 21 8 6.6556 2.3949 0.0035 22 8 4.3765 2.2209 -0.0048 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 -0.8900 27 1 1.6885 1.8465 0.8899 28 1 7.5768 -0.0377 0.2701 29 1 6.4618 -1.3471 0.7289 30 1 10.1952 0.1488 -0.4699 31 1 5.7711 -2.9900 -0.8254 32 1 7.2681 -2.6509 -3.5604 33 1 6.4257 -4.1807 -2.9676 34 1 4.2281 -2.9205 -2.8375 35 1 5.0700 -1.3905 -3.4302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759728558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = 13.909801 kcal Electronic energy + Delta-G solvation = -21360.059669 eV Core-core repulsion = 17977.274247 eV Total energy + Delta-G solvation = -3382.785422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.56180 -38.14088 -37.34957 -36.86944 -35.22412 -33.44653 -31.64770 -30.38699 -28.14194 -26.35992 -25.43018 -23.73892 -22.02828 -21.41991 -21.30107 -19.97091 -17.55516 -17.15904 -16.58002 -16.32798 -15.92753 -15.83966 -15.58100 -15.10025 -14.52147 -14.38594 -13.87241 -13.30286 -13.10159 -13.01569 -12.17933 -12.03444 -11.69268 -11.31745 -11.27115 -11.11964 -10.96578 -10.87158 -10.65765 -10.60706 -10.17267 -10.01306 -9.98848 -9.76138 -9.40953 -8.58585 -8.13145 -6.90246 -6.10664 -3.60292 2.16931 2.31774 2.95679 3.15576 3.34751 3.41048 3.47435 3.95351 4.32605 4.83529 4.86727 4.91989 5.01536 5.10316 5.13397 5.19382 5.26283 5.47253 5.56418 5.83660 6.01227 6.09935 6.12734 6.31143 6.44680 6.53699 6.81080 6.88501 6.94046 7.09210 7.23627 7.66099 8.20428 8.25067 8.50713 8.88094 9.51012 10.01558 10.96160 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.007204 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.918472 B = 3886.008329 C = 4813.238820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.167 3.833 4 C 0.184 3.816 5 N -0.226 5.226 6 N -0.439 5.439 7 C 0.367 3.633 8 N -0.520 5.520 9 C -0.287 4.287 10 H 0.068 0.932 11 C 0.034 3.966 12 N -0.882 5.882 13 Si 0.911 3.089 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.280 1.280 17 C 0.120 3.880 18 C -0.190 4.190 19 C -0.213 4.213 20 C 0.594 3.406 21 O -0.489 6.489 22 O -0.291 6.291 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.067 0.933 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 -0.349 2.230 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.286 6.286 3 C 0.088 3.912 4 C -0.043 4.043 5 N -0.056 5.056 6 N -0.278 5.278 7 C 0.162 3.838 8 N -0.235 5.235 9 C -0.416 4.416 10 H 0.086 0.914 11 C -0.169 4.169 12 N -0.522 5.522 13 Si 0.739 3.261 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.206 1.206 17 C 0.012 3.988 18 C -0.228 4.228 19 C -0.253 4.253 20 C 0.345 3.655 21 O -0.370 6.370 22 O -0.189 6.189 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.287 -0.828 2.353 14.504 hybrid contribution 0.280 1.627 -0.727 1.804 sum -14.008 0.799 1.626 14.124 Atomic orbital electron populations 1.22819 0.79775 1.03467 1.00217 1.88002 1.20080 1.24965 1.95507 1.20269 0.81479 0.86521 1.02941 1.25261 0.94396 0.81388 1.03283 1.77057 0.91514 1.21628 1.15393 1.53820 1.02718 1.06056 1.65227 1.22109 0.86048 0.88854 0.86800 1.44016 1.46241 1.20839 1.12387 1.18949 1.01004 1.31782 0.89861 0.91390 1.25158 0.95610 0.99010 0.97082 1.69662 1.16575 1.42656 1.23324 0.86235 0.78408 0.82012 0.79401 1.20227 1.21070 1.20598 1.21215 0.97509 0.90048 0.90067 1.23102 0.98788 0.97134 1.03781 1.23241 0.93179 1.01667 1.07238 1.19934 0.81640 0.84087 0.79823 1.91168 1.25168 1.64339 1.56351 1.84957 1.18088 1.36441 1.79407 0.93686 0.93638 0.88919 0.89708 0.89695 0.83337 0.91458 0.92317 0.88764 0.88162 0.90368 0.90493 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.52 10.43 -35.23 -0.37 -4.89 16 3 C 0.17 1.90 6.56 36.01 0.24 2.14 16 4 C 0.18 3.20 8.22 -13.39 -0.11 3.09 16 5 N -0.23 -4.56 12.19 32.46 0.40 -4.17 16 6 N -0.44 -10.10 3.88 -68.47 -0.27 -10.37 16 7 C 0.37 8.84 6.69 -63.74 -0.43 8.41 16 8 N -0.52 -12.88 3.04 -169.33 -0.51 -13.40 16 9 C -0.29 -7.77 8.21 -15.06 -0.12 -7.90 16 10 H 0.07 1.86 7.14 -52.49 -0.37 1.49 16 11 C 0.03 0.94 4.96 -17.43 -0.09 0.86 16 12 N -0.88 -24.77 11.32 55.49 0.63 -24.15 16 13 Si 0.91 22.62 29.61 -169.99 -5.03 17.59 16 14 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.12 2.57 6.61 -67.93 -0.45 2.12 16 18 C -0.19 -3.73 9.78 -26.73 -0.26 -3.99 16 19 C -0.21 -4.17 10.15 -26.73 -0.27 -4.45 16 20 C 0.59 14.23 9.25 54.17 0.50 14.73 16 21 O -0.49 -13.27 17.77 -19.01 -0.34 -13.61 16 22 O -0.29 -5.85 10.71 -19.81 -0.21 -6.06 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.15 4.03 5.10 -51.93 -0.26 3.76 16 29 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 30 H 0.27 7.27 8.32 -40.82 -0.34 6.93 16 31 H 0.09 1.87 8.11 -51.93 -0.42 1.45 16 32 H 0.10 2.17 6.80 -51.93 -0.35 1.82 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -32.23 310.35 -5.26 -37.49 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.35 Total: 0.51 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 0.12 Total: 16.37 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.24 Total: -52.08 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.92 Total: -24.56 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.23 -5.26 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759728558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.400 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds