Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99660 * 2 1 4 4 C 1.50702 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.29192 * 125.34910 * 0.02562 * 4 3 2 6 6 N 1.40269 * 107.86880 * 180.02562 * 5 4 3 7 7 C 1.46505 * 126.63811 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.46800 * 75.02346 * 7 6 5 9 9 C 1.36935 * 119.99841 * 89.99802 * 8 7 6 10 10 H 1.08002 * 120.00345 * 214.79615 * 9 8 7 11 11 C 1.38818 * 119.99696 * 34.80329 * 9 8 7 12 12 N 1.31621 * 120.00292 * 22.28473 * 11 9 8 13 13 Si 1.86805 * 119.99659 * 202.28174 * 11 9 8 14 14 H 1.48496 * 109.46951 * 60.00454 * 13 11 9 15 15 H 1.48504 * 109.46736 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47359 * 299.99938 * 13 11 9 17 17 C 1.46499 * 120.00005 * 270.00015 * 8 7 6 18 18 C 1.53001 * 117.49534 * 191.91181 * 17 8 7 19 19 C 1.52996 * 60.00309 * 252.51392 * 18 17 8 20 20 C 1.35029 * 106.72641 * 359.97438 * 6 5 4 21 21 O 1.21713 * 126.37526 * 179.97438 * 20 6 5 22 22 O 1.34315 * 107.25240 * 359.74447 * 20 6 5 23 23 H 1.08998 * 109.47489 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.47228 * 60.00940 * 1 2 3 25 25 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46783 * 299.99847 * 3 2 1 27 27 H 1.08996 * 109.47505 * 59.99723 * 3 2 1 28 28 H 1.08997 * 109.47275 * 195.02077 * 7 6 5 29 29 H 1.09001 * 109.47204 * 315.03149 * 7 6 5 30 30 H 0.96993 * 120.00182 * 174.51498 * 12 11 9 31 31 H 1.08997 * 115.55204 * 337.62013 * 17 8 7 32 32 H 1.08991 * 117.50121 * 0.02562 * 18 17 8 33 33 H 1.09005 * 117.49286 * 145.02360 * 18 17 8 34 34 H 1.08999 * 117.50435 * 252.51690 * 19 18 17 35 35 H 1.09003 * 117.51897 * 107.48225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.1745 0.0772 0.0006 6 7 5.5415 0.3917 0.0019 7 6 6.6571 -0.5579 0.0029 8 7 6.7987 -1.1462 -1.3314 9 6 7.6078 -0.5487 -2.2607 10 1 7.3378 -0.5714 -3.3061 11 6 8.7751 0.0862 -1.8589 12 7 9.3389 -0.2359 -0.7140 13 14 9.5457 1.3976 -2.9432 14 1 8.5809 2.5097 -3.1366 15 1 10.7763 1.9166 -2.2937 16 1 9.8931 0.8087 -4.2614 17 6 6.0748 -2.3736 -1.6714 18 6 6.4696 -3.0915 -2.9636 19 6 5.1441 -2.3315 -2.8851 20 6 5.6303 1.7391 0.0021 21 8 6.6556 2.3949 0.0035 22 8 4.3765 2.2209 -0.0048 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 -0.8900 27 1 1.6885 1.8465 0.8899 28 1 7.5768 -0.0377 0.2701 29 1 6.4618 -1.3471 0.7289 30 1 10.1952 0.1488 -0.4699 31 1 5.7711 -2.9900 -0.8254 32 1 7.2681 -2.6509 -3.5604 33 1 6.4257 -4.1807 -2.9676 34 1 4.2281 -2.9205 -2.8375 35 1 5.0700 -1.3905 -3.4302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759728558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -10.003233 kcal Electronic energy + Delta-G solvation = -21361.096616 eV Core-core repulsion = 17977.274247 eV Total energy + Delta-G solvation = -3383.822369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.24810 -39.31272 -38.94150 -38.58909 -36.91756 -35.29854 -33.31236 -32.09358 -29.45721 -27.66739 -26.76530 -25.51169 -23.67789 -22.99758 -22.89530 -21.77442 -19.28837 -18.77871 -18.12281 -17.60976 -17.57208 -17.19897 -16.74412 -16.59672 -16.36403 -16.10107 -15.65872 -14.96082 -14.43775 -14.05021 -13.92720 -13.33307 -13.23418 -13.08397 -12.90355 -12.82251 -12.74708 -12.50308 -12.24915 -12.20395 -12.10047 -11.86423 -11.57608 -11.04650 -10.75578 -10.58119 -9.84984 -8.82203 -8.16005 -5.67552 0.67639 0.73281 1.22994 1.33356 1.41945 1.44165 1.61786 2.32532 2.95645 3.04066 3.22599 3.39671 3.48635 3.88067 4.17379 4.23978 4.28592 4.38817 4.44494 4.51237 4.62218 4.64521 4.70368 4.91048 4.98022 5.00447 5.09672 5.25539 5.36601 5.49598 5.53897 6.08683 6.21815 6.49104 6.75493 6.87233 7.53632 8.02021 8.88159 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.007204 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.918472 B = 3886.008329 C = 4813.238820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.166 3.834 4 C 0.207 3.793 5 N -0.252 5.252 6 N -0.445 5.445 7 C 0.374 3.626 8 N -0.536 5.536 9 C -0.286 4.286 10 H 0.058 0.942 11 C -0.006 4.006 12 N -0.902 5.902 13 Si 0.952 3.048 14 H -0.296 1.296 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.096 3.904 18 C -0.180 4.180 19 C -0.195 4.195 20 C 0.585 3.415 21 O -0.533 6.533 22 O -0.283 6.283 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.263 0.737 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.013 -0.890 2.003 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C 0.088 3.912 4 C -0.020 4.020 5 N -0.081 5.081 6 N -0.282 5.282 7 C 0.168 3.832 8 N -0.252 5.252 9 C -0.416 4.416 10 H 0.076 0.924 11 C -0.207 4.207 12 N -0.544 5.544 13 Si 0.780 3.220 14 H -0.223 1.223 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.011 4.011 18 C -0.218 4.218 19 C -0.235 4.235 20 C 0.337 3.663 21 O -0.418 6.418 22 O -0.180 6.180 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.134 0.866 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.125 -1.407 2.114 17.312 hybrid contribution 0.868 1.802 -0.628 2.096 sum -16.257 0.395 1.486 16.330 Atomic orbital electron populations 1.23059 0.77169 1.04484 1.01992 1.87952 1.22774 1.25385 1.95909 1.20788 0.77034 0.87163 1.06259 1.26821 0.96447 0.79713 0.99001 1.77096 0.89570 1.22629 1.18764 1.53392 1.04238 1.05443 1.65177 1.21726 0.85402 0.88833 0.87194 1.44067 1.46813 1.22265 1.12038 1.18977 1.00981 1.31720 0.89917 0.92432 1.25670 0.96402 1.00433 0.98167 1.69756 1.16694 1.43631 1.24288 0.85585 0.77349 0.79805 0.79277 1.22287 1.20867 1.18759 1.21479 0.98574 0.89541 0.91458 1.23107 0.98005 0.98850 1.01822 1.23161 0.94294 1.00935 1.05150 1.19967 0.82201 0.84297 0.79855 1.91121 1.27098 1.65257 1.58360 1.84948 1.17149 1.36917 1.78974 0.91643 0.92062 0.88417 0.86580 0.85725 0.86527 0.89676 0.92734 0.86988 0.90637 0.87016 0.87465 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -8.47 10.43 -148.98 -1.55 -10.03 16 3 C 0.17 3.11 6.56 71.24 0.47 3.58 16 4 C 0.21 6.74 8.22 88.50 0.73 7.47 16 5 N -0.25 -9.86 12.19 -166.08 -2.02 -11.89 16 6 N -0.45 -20.61 3.88 -600.74 -2.33 -22.94 16 7 C 0.37 18.34 6.69 170.95 1.14 19.48 16 8 N -0.54 -26.75 3.04 -689.65 -2.10 -28.85 16 9 C -0.29 -15.81 8.21 84.04 0.69 -15.12 16 10 H 0.06 3.23 7.14 -2.91 -0.02 3.21 16 11 C -0.01 -0.36 4.96 84.86 0.42 0.06 16 12 N -0.90 -52.15 11.32 21.65 0.25 -51.90 16 13 Si 0.95 47.41 29.61 68.60 2.03 49.44 16 14 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 15 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.10 4.02 6.61 44.99 0.30 4.32 16 18 C -0.18 -6.78 9.78 30.59 0.30 -6.48 16 19 C -0.20 -7.30 10.15 30.59 0.31 -6.99 16 20 C 0.59 28.44 9.25 129.75 1.20 29.64 16 21 O -0.53 -29.97 17.77 18.74 0.33 -29.64 16 22 O -0.28 -11.06 10.71 15.89 0.17 -10.89 16 23 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 6.57 5.10 -2.39 -0.01 6.56 16 29 H 0.09 3.77 8.04 -2.39 -0.02 3.75 16 30 H 0.26 14.80 8.32 -92.71 -0.77 14.03 16 31 H 0.11 4.23 8.11 -2.39 -0.02 4.21 16 32 H 0.08 3.25 6.80 -2.39 -0.02 3.23 16 33 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 34 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -72.36 310.35 2.69 -69.68 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.11 Total: 9.50 kcal Atomic # 6 Polarization: 30.71 SS G_CDS: 6.80 Total: 37.52 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.21 Total: -115.57 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.05 Total: -50.56 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -72.36 2.69 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759728558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.676 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds