Wall clock time and date at job start Mon Mar 30 2020 00:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47043 * 2 1 4 4 C 1.46504 * 120.00242 * 270.00077 * 3 2 1 5 5 C 1.50696 * 109.47439 * 269.99986 * 4 3 2 6 6 H 1.07998 * 119.99516 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00108 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99986 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47277 * 89.99532 * 9 7 5 11 11 H 1.48493 * 109.47379 * 209.99937 * 9 7 5 12 12 H 1.48502 * 109.47223 * 329.99950 * 9 7 5 13 13 C 1.34780 * 119.99969 * 89.99951 * 3 2 1 14 14 O 1.21618 * 120.00052 * 179.97438 * 13 3 2 15 15 C 1.47097 * 119.99795 * 0.02562 * 13 3 2 16 16 C 1.33001 * 119.99780 * 186.86093 * 15 13 3 17 17 C 1.50656 * 119.83808 * 351.35616 * 16 15 13 18 18 C 1.53686 * 109.15489 * 117.48872 * 17 16 15 19 19 S 1.81621 * 108.98211 * 57.98221 * 18 17 16 20 20 C 1.81622 * 102.56048 * 303.38628 * 19 18 17 21 21 C 1.50655 * 119.83825 * 171.63550 * 16 15 13 22 22 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46988 * 299.99637 * 1 2 3 24 24 H 1.09002 * 109.47475 * 59.99837 * 1 2 3 25 25 H 1.09002 * 109.46988 * 240.00363 * 2 1 3 26 26 H 1.09002 * 109.47475 * 120.00163 * 2 1 3 27 27 H 1.09001 * 109.47050 * 30.00268 * 4 3 2 28 28 H 1.08999 * 109.46975 * 149.99668 * 4 3 2 29 29 H 0.97000 * 120.00026 * 180.02562 * 8 7 5 30 30 H 1.08003 * 120.00242 * 6.57872 * 15 13 3 31 31 H 1.08996 * 109.47832 * 237.49263 * 17 16 15 32 32 H 1.09002 * 109.48018 * 357.51579 * 17 16 15 33 33 H 1.09003 * 109.66762 * 298.07143 * 18 17 16 34 34 H 1.09002 * 109.54722 * 177.81963 * 18 17 16 35 35 H 1.08999 * 109.54454 * 296.62383 * 20 19 18 36 36 H 1.08996 * 109.61420 * 176.40289 * 20 19 18 37 37 H 1.09002 * 109.48087 * 2.48332 * 21 16 15 38 38 H 1.08995 * 109.48045 * 122.50295 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2303 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 5.9759 0.8761 -4.2608 11 1 6.3928 3.2642 -4.1993 12 1 6.7735 1.9157 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6487 3.1630 1.1673 15 6 1.9983 1.3229 2.4411 16 6 2.0878 1.9889 3.5888 17 6 2.6272 3.3956 3.5991 18 6 1.5310 4.3525 4.0936 19 16 0.9954 3.8321 5.7493 20 6 0.4832 2.1112 5.4760 21 6 1.6552 1.3308 4.8731 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5816 1.6878 -2.0284 28 1 2.0954 3.1410 -1.1383 29 1 3.6752 3.5173 -4.4434 30 1 1.7415 0.2738 2.4442 31 1 3.4883 3.4498 4.2651 32 1 2.9297 3.6762 2.5902 33 1 0.6825 4.3230 3.4099 34 1 1.9264 5.3671 4.1404 35 1 -0.3627 2.0873 4.7890 36 1 0.1947 1.6602 6.4254 37 1 1.3433 0.3064 4.6696 38 1 2.4877 1.3243 5.5766 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771652358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:24 Heat of formation + Delta-G solvation = -12.856555 kcal Electronic energy + Delta-G solvation = -18875.445878 eV Core-core repulsion = 16037.792994 eV Total energy + Delta-G solvation = -2837.652884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59383 -36.81223 -35.32830 -32.85295 -31.64742 -30.48999 -30.11239 -27.28688 -24.75267 -23.38135 -23.08804 -22.48590 -19.53043 -18.17446 -16.79766 -16.40825 -16.38523 -15.47848 -14.72240 -14.55367 -14.30665 -13.99525 -13.90309 -13.51119 -13.34449 -13.06541 -12.91161 -12.49696 -12.17140 -11.96047 -11.77126 -11.71537 -11.24283 -11.16079 -10.93625 -10.83206 -10.67972 -10.51219 -10.12535 -9.81912 -9.67435 -9.05288 -8.46665 -8.29603 -7.73237 -7.64512 -6.07501 -4.12477 1.56852 1.77779 2.54367 3.28152 3.35146 3.39327 3.85970 3.87173 4.42372 4.62652 4.75948 4.85576 5.04349 5.21164 5.24530 5.27256 5.31241 5.37079 5.48483 5.56405 5.59948 5.66726 5.75523 5.81006 6.00365 6.10392 6.18723 6.31806 6.45722 6.61422 6.90013 7.06709 7.42421 7.57236 7.88968 8.19385 8.38200 8.87201 9.06716 9.52903 11.00527 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.004814 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.763631 B = 5815.234293 C = 6360.678209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.586 5.586 4 C 0.244 3.756 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.539 3.461 14 O -0.530 6.530 15 C -0.204 4.204 16 C -0.057 4.057 17 C -0.168 4.168 18 C -0.057 4.057 19 S -0.291 6.291 20 C -0.072 4.072 21 C -0.090 4.090 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.180 0.820 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -5.784 14.565 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.315 5.315 4 C 0.125 3.875 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.329 3.671 14 O -0.413 6.413 15 C -0.225 4.225 16 C -0.059 4.059 17 C -0.205 4.205 18 C -0.205 4.205 19 S -0.065 6.065 20 C -0.220 4.220 21 C -0.129 4.129 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.195 0.805 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.232 -4.504 15.279 17.105 hybrid contribution 0.859 -1.062 -1.384 1.944 sum -5.373 -5.566 13.895 15.904 Atomic orbital electron populations 1.22219 0.96686 1.01419 1.02379 1.21472 0.93568 0.84119 1.02728 1.48200 1.62465 1.13135 1.07704 1.19316 0.96382 0.93710 0.78056 1.21414 0.96817 1.31966 1.06351 0.92442 1.24926 0.97868 0.94862 0.96363 1.69930 1.35712 1.33370 1.14318 0.86498 0.84634 0.77694 0.78612 1.20645 1.21063 1.19878 1.18392 0.78181 0.86183 0.84293 1.90113 1.48160 1.18541 1.84455 1.22715 1.06771 1.00206 0.92836 1.22365 0.93329 0.96587 0.93602 1.22654 0.96530 0.90042 1.11227 1.23457 1.01596 1.02407 0.93033 1.86649 1.85057 1.15109 1.19672 1.23294 1.00064 0.94043 1.04582 1.20922 0.97928 0.98661 0.95398 0.92177 0.92988 0.92063 0.89889 0.91507 0.94972 0.93720 0.92688 0.85785 0.90716 0.80528 0.90036 0.87772 0.89851 0.87665 0.90147 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.65 5.89 -4.04 -0.02 1.62 16 3 N -0.59 -12.06 2.46 -176.46 -0.43 -12.50 16 4 C 0.24 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.54 10.86 7.59 -12.67 -0.10 10.76 16 14 O -0.53 -12.35 12.41 5.26 0.07 -12.29 16 15 C -0.20 -3.12 8.84 -37.81 -0.33 -3.45 16 16 C -0.06 -0.79 5.10 -101.21 -0.52 -1.31 16 17 C -0.17 -2.57 5.58 -27.55 -0.15 -2.72 16 18 C -0.06 -0.79 6.50 37.51 0.24 -0.55 16 19 S -0.29 -3.70 22.23 -107.50 -2.39 -6.09 16 20 C -0.07 -0.73 6.48 37.24 0.24 -0.49 16 21 C -0.09 -0.95 5.87 -27.82 -0.16 -1.11 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 26 H 0.07 0.88 6.02 -51.93 -0.31 0.57 16 27 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.12 1.55 5.98 -52.48 -0.31 1.24 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.18 3.36 3.69 -57.80 -0.21 3.15 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -30.76 319.79 -8.91 -39.67 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.82 Total: 1.49 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.87 Total: -6.22 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.30 Total: -37.98 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.39 Total: -6.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.76 -8.91 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771652358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.812 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds