Wall clock time and date at job start Mon Mar 30 2020 00:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47043 * 2 1 4 4 C 1.46504 * 120.00242 * 270.00077 * 3 2 1 5 5 C 1.50696 * 109.47439 * 269.99986 * 4 3 2 6 6 H 1.07998 * 119.99516 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00108 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99986 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47277 * 89.99532 * 9 7 5 11 11 H 1.48493 * 109.47379 * 209.99937 * 9 7 5 12 12 H 1.48502 * 109.47223 * 329.99950 * 9 7 5 13 13 C 1.34780 * 119.99969 * 89.99951 * 3 2 1 14 14 O 1.21618 * 120.00052 * 179.97438 * 13 3 2 15 15 C 1.47097 * 119.99795 * 0.02562 * 13 3 2 16 16 C 1.33001 * 119.99780 * 186.86093 * 15 13 3 17 17 C 1.50656 * 119.83808 * 351.35616 * 16 15 13 18 18 C 1.53686 * 109.15489 * 117.48872 * 17 16 15 19 19 S 1.81621 * 108.98211 * 57.98221 * 18 17 16 20 20 C 1.81622 * 102.56048 * 303.38628 * 19 18 17 21 21 C 1.50655 * 119.83825 * 171.63550 * 16 15 13 22 22 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46988 * 299.99637 * 1 2 3 24 24 H 1.09002 * 109.47475 * 59.99837 * 1 2 3 25 25 H 1.09002 * 109.46988 * 240.00363 * 2 1 3 26 26 H 1.09002 * 109.47475 * 120.00163 * 2 1 3 27 27 H 1.09001 * 109.47050 * 30.00268 * 4 3 2 28 28 H 1.08999 * 109.46975 * 149.99668 * 4 3 2 29 29 H 0.97000 * 120.00026 * 180.02562 * 8 7 5 30 30 H 1.08003 * 120.00242 * 6.57872 * 15 13 3 31 31 H 1.08996 * 109.47832 * 237.49263 * 17 16 15 32 32 H 1.09002 * 109.48018 * 357.51579 * 17 16 15 33 33 H 1.09003 * 109.66762 * 298.07143 * 18 17 16 34 34 H 1.09002 * 109.54722 * 177.81963 * 18 17 16 35 35 H 1.08999 * 109.54454 * 296.62383 * 20 19 18 36 36 H 1.08996 * 109.61420 * 176.40289 * 20 19 18 37 37 H 1.09002 * 109.48087 * 2.48332 * 21 16 15 38 38 H 1.08995 * 109.48045 * 122.50295 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2303 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 5.9759 0.8761 -4.2608 11 1 6.3928 3.2642 -4.1993 12 1 6.7735 1.9157 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6487 3.1630 1.1673 15 6 1.9983 1.3229 2.4411 16 6 2.0878 1.9889 3.5888 17 6 2.6272 3.3956 3.5991 18 6 1.5310 4.3525 4.0936 19 16 0.9954 3.8321 5.7493 20 6 0.4832 2.1112 5.4760 21 6 1.6552 1.3308 4.8731 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5816 1.6878 -2.0284 28 1 2.0954 3.1410 -1.1383 29 1 3.6752 3.5173 -4.4434 30 1 1.7415 0.2738 2.4442 31 1 3.4883 3.4498 4.2651 32 1 2.9297 3.6762 2.5902 33 1 0.6825 4.3230 3.4099 34 1 1.9264 5.3671 4.1404 35 1 -0.3627 2.0873 4.7890 36 1 0.1947 1.6602 6.4254 37 1 1.3433 0.3064 4.6696 38 1 2.4877 1.3243 5.5766 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771652358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:24 Heat of formation + Delta-G solvation = -30.599503 kcal Electronic energy + Delta-G solvation = -18876.215269 eV Core-core repulsion = 16037.792994 eV Total energy + Delta-G solvation = -2838.422276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08156 -38.06195 -36.80816 -34.92469 -32.66183 -31.87834 -31.40622 -29.09818 -26.18096 -24.66357 -24.40712 -23.91481 -20.87566 -19.50110 -18.64562 -18.10163 -17.51214 -16.98787 -16.33036 -15.92292 -15.64393 -15.27536 -15.07880 -14.70871 -14.45872 -14.40815 -14.14363 -13.97411 -13.66761 -13.28658 -13.18361 -13.06341 -12.72992 -12.68825 -12.49335 -12.29021 -12.16485 -11.94016 -11.72767 -11.64951 -10.87550 -10.64724 -10.23621 -9.72699 -9.40525 -8.68483 -8.22838 -6.37878 0.35352 0.80847 1.36144 1.38907 1.49292 1.56420 2.28962 2.39454 2.48348 3.06665 3.61370 3.70578 3.94922 3.98571 4.13181 4.15135 4.21249 4.38073 4.42404 4.49690 4.55463 4.70699 4.80847 4.89425 4.93096 4.93747 4.97762 5.04604 5.19544 5.21220 5.36836 5.44591 5.58465 5.75426 5.94903 6.06860 6.69795 6.82880 7.29272 7.54106 8.83979 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.004814 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.763631 B = 5815.234293 C = 6360.678209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.525 3.475 14 O -0.577 6.577 15 C -0.213 4.213 16 C -0.041 4.041 17 C -0.172 4.172 18 C -0.055 4.055 19 S -0.303 6.303 20 C -0.065 4.065 21 C -0.084 4.084 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.020 0.980 28 H -0.001 1.001 29 H 0.267 0.733 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -8.419 16.739 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.318 3.682 14 O -0.463 6.463 15 C -0.234 4.234 16 C -0.043 4.043 17 C -0.209 4.209 18 C -0.203 4.203 19 S -0.076 6.076 20 C -0.213 4.213 21 C -0.123 4.123 22 H 0.115 0.885 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.038 0.962 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.179 0.821 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.393 -7.178 17.471 19.941 hybrid contribution 0.870 -0.185 -1.984 2.174 sum -5.523 -7.363 15.487 18.016 Atomic orbital electron populations 1.22142 0.94575 1.03490 1.01535 1.21788 0.95286 0.81401 1.03883 1.48223 1.63033 1.14960 1.06208 1.18717 0.95285 0.91638 0.80353 1.21684 0.97794 1.31961 1.06564 0.92930 1.25836 1.02322 0.94434 0.96408 1.70052 1.37775 1.34198 1.14787 0.85424 0.79049 0.78186 0.78204 1.18834 1.20660 1.19797 1.19336 0.77143 0.85993 0.85708 1.90173 1.49890 1.20678 1.85522 1.22618 1.08924 1.01624 0.90189 1.22682 0.91020 0.95451 0.95183 1.22470 0.97437 0.91910 1.09125 1.23290 1.00623 1.02352 0.94006 1.86703 1.84980 1.18035 1.17918 1.23455 0.99916 0.91648 1.06297 1.20996 0.98307 0.99879 0.93090 0.88516 0.92276 0.94489 0.91017 0.87991 0.96163 0.98289 0.92415 0.82092 0.90190 0.84108 0.91361 0.87832 0.89474 0.84583 0.86762 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.96 5.89 86.38 0.51 3.47 16 3 N -0.60 -25.13 2.46 -830.44 -2.04 -27.17 16 4 C 0.26 14.12 5.16 85.63 0.44 14.56 16 5 C -0.54 -31.22 9.39 25.60 0.24 -30.98 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.53 21.63 7.59 86.57 0.66 22.29 16 14 O -0.58 -28.62 12.41 -4.09 -0.05 -28.67 16 15 C -0.21 -6.07 8.84 23.43 0.21 -5.87 16 16 C -0.04 -1.06 5.10 -17.64 -0.09 -1.15 16 17 C -0.17 -5.30 5.58 30.07 0.17 -5.13 16 18 C -0.05 -1.52 6.50 72.21 0.47 -1.06 16 19 S -0.30 -7.10 22.23 -56.49 -1.26 -8.35 16 20 C -0.07 -1.07 6.48 72.04 0.47 -0.60 16 21 C -0.08 -1.38 5.87 29.89 0.18 -1.21 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 26 H 0.10 2.34 6.02 -2.39 -0.01 2.32 16 27 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 28 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.16 3.30 5.98 -2.91 -0.02 3.28 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.14 5.69 3.69 -95.41 -0.35 5.34 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.24 7.81 -2.39 -0.02 1.22 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.46 319.79 4.10 -67.36 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.69 Total: 13.67 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.44 Total: -7.85 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.75 Total: -83.10 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -7.10 SS G_CDS: -1.26 Total: -8.35 kcal Total: -71.46 4.10 -67.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771652358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.762 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds