Wall clock time and date at job start Mon Mar 30 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37364 * 125.83455 * 2 1 4 4 N 1.29398 * 108.83273 * 179.87027 * 3 2 1 5 5 N 1.40170 * 108.13850 * 0.38626 * 4 3 2 6 6 C 1.46501 * 126.35006 * 179.75494 * 5 4 3 7 7 C 1.50700 * 109.47068 * 269.99780 * 6 5 4 8 8 O 1.20824 * 119.99894 * 359.97438 * 7 6 5 9 9 O 1.34232 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99795 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00473 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00335 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47146 * 119.99666 * 17 15 13 20 20 H 1.48502 * 109.46812 * 240.00057 * 17 15 13 21 21 C 1.34818 * 125.83407 * 180.30146 * 2 1 3 22 22 O 1.21813 * 126.29915 * 359.93868 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.69141 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69197 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69324 * 1 2 3 26 26 H 1.08004 * 125.58419 * 0.03361 * 3 2 1 27 27 H 1.08994 * 109.47168 * 30.00064 * 6 5 4 28 28 H 1.09008 * 109.47151 * 149.99601 * 6 5 4 29 29 H 1.08999 * 109.47786 * 300.00290 * 10 9 7 30 30 H 1.09002 * 109.46976 * 59.99942 * 10 9 7 31 31 H 1.08997 * 109.47414 * 300.00357 * 11 10 9 32 32 H 1.09006 * 109.46556 * 60.00737 * 11 10 9 33 33 H 1.09003 * 109.47147 * 300.00897 * 12 11 10 34 34 H 1.09002 * 109.46990 * 60.00133 * 12 11 10 35 35 H 0.96996 * 119.99712 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0028 5 7 3.5344 -0.6661 -0.0043 6 6 4.7314 -1.5109 -0.0091 7 6 5.1411 -1.7934 -1.4316 8 8 4.4989 -1.3365 -2.3473 9 8 6.2195 -2.5527 -1.6811 10 6 6.5548 -2.7836 -3.0748 11 6 7.8039 -3.6631 -3.1599 12 6 8.1577 -3.9059 -4.6286 13 6 9.3875 -4.7726 -4.7124 14 1 9.8686 -5.1164 -3.8086 15 6 9.8988 -5.1269 -5.9429 16 7 9.3127 -4.7088 -7.0435 17 14 11.4229 -6.2019 -6.0468 18 1 11.8873 -6.5361 -4.6764 19 1 11.0976 -7.4526 -6.7784 20 1 12.4958 -5.4711 -6.7680 21 6 2.2543 -1.0930 -0.0058 22 8 1.8805 -2.2523 -0.0108 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9250 2.1374 0.0005 27 1 5.5416 -0.9959 0.5069 28 1 4.5153 -2.4501 0.5002 29 1 5.7231 -3.2842 -3.5706 30 1 6.7487 -1.8294 -3.5648 31 1 8.6355 -3.1622 -2.6643 32 1 7.6104 -4.6174 -2.6699 33 1 7.3261 -4.4066 -5.1246 34 1 8.3513 -2.9515 -5.1182 35 1 9.6721 -4.9583 -7.9092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781264865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:10 Heat of formation + Delta-G solvation = -44.947044 kcal Electronic energy + Delta-G solvation = -19690.579839 eV Core-core repulsion = 16305.242192 eV Total energy + Delta-G solvation = -3385.337646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.70930 -40.20911 -37.51168 -36.69066 -35.47839 -33.99859 -32.31355 -31.64870 -28.96371 -27.54107 -26.69347 -23.67509 -22.90235 -21.81208 -20.79111 -20.31059 -18.01062 -17.85241 -16.92355 -16.68524 -16.40975 -16.19354 -15.82093 -15.64200 -14.88151 -14.45314 -14.23639 -13.92295 -13.17304 -13.13476 -12.83573 -12.75094 -12.20271 -12.19832 -11.98843 -11.86748 -10.98390 -10.92541 -10.64873 -10.60265 -10.54742 -10.41137 -10.22300 -9.72554 -9.51591 -9.14941 -8.87922 -8.38548 -6.03046 -4.06048 1.30041 1.64982 2.23640 2.34696 2.70039 3.03153 3.30798 3.38113 3.42614 4.07225 4.39267 4.43761 4.60017 4.76820 4.81456 4.89000 5.03902 5.10420 5.33020 5.48853 5.57535 5.61684 5.72262 6.00470 6.17696 6.44914 6.54268 6.82101 6.98308 7.28096 7.60955 7.71601 7.72049 7.85150 7.95457 8.36311 9.00496 9.58309 11.08518 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.053889 B = 0.002753 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.466027 B =10168.466105 C =10215.710199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.562 5.562 3 C 0.259 3.741 4 N -0.273 5.273 5 N -0.443 5.443 6 C 0.172 3.828 7 C 0.440 3.560 8 O -0.500 6.500 9 O -0.354 6.354 10 C 0.070 3.930 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.653 3.347 22 O -0.548 6.548 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 13.532 17.617 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.291 5.291 3 C -0.040 4.040 4 N -0.094 5.094 5 N -0.264 5.264 6 C 0.048 3.952 7 C 0.280 3.720 8 O -0.387 6.387 9 O -0.270 6.270 10 C -0.003 4.003 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.352 3.648 22 O -0.420 6.420 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.249 0.751 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.158 13.042 17.113 26.908 hybrid contribution -0.009 -0.624 -0.518 0.811 sum -16.167 12.418 16.595 26.287 Atomic orbital electron populations 1.21842 0.73955 1.04938 1.03522 1.45867 1.08947 1.06575 1.67730 1.25960 0.85693 0.94807 0.97553 1.77022 1.18343 0.91171 1.22861 1.48276 1.05487 1.03399 1.69199 1.20754 0.85915 0.96167 0.92338 1.23838 0.79224 0.76341 0.92576 1.90684 1.52826 1.48517 1.46698 1.86471 1.43436 1.63439 1.33661 1.23553 0.99536 1.00930 0.76302 1.21777 0.93183 0.97706 1.01947 1.19063 0.96903 0.97316 0.88107 1.21207 1.11134 1.31114 0.92390 0.92329 1.25042 0.97418 0.96291 0.95799 1.69982 1.40363 1.45541 0.97514 0.86480 0.82844 0.80218 0.78142 1.19648 1.20971 1.20977 1.16663 0.81874 0.85155 0.81062 1.91109 1.77567 1.15233 1.58135 0.90759 0.89341 0.89204 0.75078 0.84310 0.84410 0.91469 0.91433 0.92021 0.92023 0.96230 0.96222 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.05 59.85 0.66 1.13 16 2 N -0.56 -5.03 3.14 -130.10 -0.41 -5.43 16 3 C 0.26 1.81 12.66 -89.12 -1.13 0.68 16 4 N -0.27 -2.96 12.53 29.87 0.37 -2.59 16 5 N -0.44 -5.67 3.11 -66.31 -0.21 -5.88 16 6 C 0.17 1.97 6.98 -5.19 -0.04 1.94 16 7 C 0.44 7.05 8.03 36.01 0.29 7.34 16 8 O -0.50 -9.77 16.18 -18.75 -0.30 -10.07 16 9 O -0.35 -6.00 10.22 -39.26 -0.40 -6.40 16 10 C 0.07 1.33 5.47 37.16 0.20 1.53 16 11 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C 0.65 8.90 8.60 -86.73 -0.75 8.16 16 22 O -0.55 -9.29 17.71 5.09 0.09 -9.20 16 23 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.23 0.24 8.06 -52.48 -0.42 -0.18 16 27 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.14 1.33 8.11 -51.92 -0.42 0.91 16 29 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 30 H 0.07 1.30 8.13 -51.93 -0.42 0.87 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -38.65 318.45 -6.40 -45.05 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: -4.61 Total: -5.81 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.45 Total: 5.20 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.50 Total: -40.30 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.61 Total: -25.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.65 -6.40 -45.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781264865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.107 kcal (2) G-P(sol) polarization free energy of solvation -38.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds