Wall clock time and date at job start Mon Mar 30 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37364 * 125.83455 * 2 1 4 4 N 1.29398 * 108.83273 * 179.87027 * 3 2 1 5 5 N 1.40170 * 108.13850 * 0.38626 * 4 3 2 6 6 C 1.46501 * 126.35006 * 179.75494 * 5 4 3 7 7 C 1.50700 * 109.47068 * 269.99780 * 6 5 4 8 8 O 1.20824 * 119.99894 * 359.97438 * 7 6 5 9 9 O 1.34232 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99795 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00473 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00335 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47146 * 119.99666 * 17 15 13 20 20 H 1.48502 * 109.46812 * 240.00057 * 17 15 13 21 21 C 1.34818 * 125.83407 * 180.30146 * 2 1 3 22 22 O 1.21813 * 126.29915 * 359.93868 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.69141 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69197 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69324 * 1 2 3 26 26 H 1.08004 * 125.58419 * 0.03361 * 3 2 1 27 27 H 1.08994 * 109.47168 * 30.00064 * 6 5 4 28 28 H 1.09008 * 109.47151 * 149.99601 * 6 5 4 29 29 H 1.08999 * 109.47786 * 300.00290 * 10 9 7 30 30 H 1.09002 * 109.46976 * 59.99942 * 10 9 7 31 31 H 1.08997 * 109.47414 * 300.00357 * 11 10 9 32 32 H 1.09006 * 109.46556 * 60.00737 * 11 10 9 33 33 H 1.09003 * 109.47147 * 300.00897 * 12 11 10 34 34 H 1.09002 * 109.46990 * 60.00133 * 12 11 10 35 35 H 0.96996 * 119.99712 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0028 5 7 3.5344 -0.6661 -0.0043 6 6 4.7314 -1.5109 -0.0091 7 6 5.1411 -1.7934 -1.4316 8 8 4.4989 -1.3365 -2.3473 9 8 6.2195 -2.5527 -1.6811 10 6 6.5548 -2.7836 -3.0748 11 6 7.8039 -3.6631 -3.1599 12 6 8.1577 -3.9059 -4.6286 13 6 9.3875 -4.7726 -4.7124 14 1 9.8686 -5.1164 -3.8086 15 6 9.8988 -5.1269 -5.9429 16 7 9.3127 -4.7088 -7.0435 17 14 11.4229 -6.2019 -6.0468 18 1 11.8873 -6.5361 -4.6764 19 1 11.0976 -7.4526 -6.7784 20 1 12.4958 -5.4711 -6.7680 21 6 2.2543 -1.0930 -0.0058 22 8 1.8805 -2.2523 -0.0108 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9250 2.1374 0.0005 27 1 5.5416 -0.9959 0.5069 28 1 4.5153 -2.4501 0.5002 29 1 5.7231 -3.2842 -3.5706 30 1 6.7487 -1.8294 -3.5648 31 1 8.6355 -3.1622 -2.6643 32 1 7.6104 -4.6174 -2.6699 33 1 7.3261 -4.4066 -5.1246 34 1 8.3513 -2.9515 -5.1182 35 1 9.6721 -4.9583 -7.9092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781264865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:10 Heat of formation + Delta-G solvation = -70.315573 kcal Electronic energy + Delta-G solvation = -19691.679901 eV Core-core repulsion = 16305.242192 eV Total energy + Delta-G solvation = -3386.437708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.50197 -41.56028 -38.51421 -38.07239 -36.32219 -35.97499 -33.77420 -33.00181 -29.99399 -28.87842 -27.77672 -25.34752 -23.92079 -22.76365 -22.21755 -21.86249 -19.16053 -18.80393 -18.53325 -17.94568 -17.81786 -17.20579 -16.84138 -16.69500 -16.48956 -15.80631 -15.55629 -14.85077 -14.41320 -14.14823 -14.11574 -13.79990 -13.61223 -13.50683 -13.39053 -12.97520 -12.86119 -12.52680 -12.42634 -12.14598 -12.06319 -11.59672 -11.50741 -11.46879 -11.28603 -11.04203 -10.59633 -9.77283 -8.23338 -6.35071 0.47844 0.96283 0.99914 1.40227 1.41372 1.42052 1.55243 1.72404 2.21892 2.40605 3.10689 3.38233 3.46705 3.93627 4.00067 4.03267 4.06644 4.09789 4.33979 4.35273 4.52240 4.72621 4.76206 4.78847 4.85065 4.93361 5.04640 5.31031 5.47725 5.60813 5.61834 5.78297 6.16891 6.49816 6.53278 6.81098 6.83773 7.34695 8.89332 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.053889 B = 0.002753 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.466027 B =10168.466105 C =10215.710199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.285 3.715 4 N -0.312 5.312 5 N -0.453 5.453 6 C 0.175 3.825 7 C 0.439 3.561 8 O -0.540 6.540 9 O -0.348 6.348 10 C 0.079 3.921 11 C -0.093 4.093 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.632 3.368 22 O -0.596 6.596 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.131 0.869 26 H 0.293 0.707 27 H 0.176 0.824 28 H 0.155 0.845 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.068 0.932 33 H -0.006 1.006 34 H -0.003 1.003 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 14.723 19.371 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.012 4.012 4 N -0.133 5.133 5 N -0.273 5.273 6 C 0.052 3.948 7 C 0.282 3.718 8 O -0.429 6.429 9 O -0.264 6.264 10 C 0.005 3.995 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.182 1.182 19 H -0.205 1.205 20 H -0.203 1.203 21 C 0.331 3.669 22 O -0.473 6.473 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.308 0.692 27 H 0.194 0.806 28 H 0.173 0.827 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.151 14.276 18.901 28.669 hybrid contribution -0.148 -0.878 -1.047 1.375 sum -16.299 13.398 17.853 27.639 Atomic orbital electron populations 1.22206 0.71556 1.05961 1.05155 1.46145 1.10312 1.05845 1.66299 1.27205 0.84286 0.96212 0.93523 1.77047 1.20571 0.89743 1.25951 1.48455 1.05350 1.04544 1.68903 1.21045 0.87011 0.97685 0.89068 1.24866 0.77931 0.74815 0.94209 1.90663 1.53847 1.50060 1.48338 1.86461 1.44233 1.63903 1.31781 1.23163 0.98341 1.00207 0.77741 1.21469 0.94416 0.98627 0.98513 1.18948 0.95623 0.95586 0.91084 1.21650 1.11889 1.31442 0.92945 0.91488 1.26047 1.00961 0.97728 0.95354 1.70117 1.42257 1.46944 0.98229 0.85305 0.78397 0.78053 0.78727 1.18243 1.20455 1.20316 1.17091 0.82782 0.85622 0.81362 1.91050 1.78478 1.17358 1.60394 0.88836 0.91459 0.85058 0.69210 0.80639 0.82713 0.92517 0.91835 0.90917 0.91330 0.98766 0.98461 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.05 127.77 1.41 2.06 16 2 N -0.56 -8.91 3.14 -683.67 -2.15 -11.05 16 3 C 0.29 3.06 12.66 179.82 2.28 5.34 16 4 N -0.31 -6.15 12.53 -59.41 -0.74 -6.89 16 5 N -0.45 -11.21 3.11 -481.77 -1.50 -12.71 16 6 C 0.17 3.84 6.98 85.63 0.60 4.44 16 7 C 0.44 14.02 8.03 71.24 0.57 14.60 16 8 O -0.54 -21.47 16.18 21.97 0.36 -21.11 16 9 O -0.35 -11.67 10.22 -51.44 -0.53 -12.19 16 10 C 0.08 3.07 5.47 71.98 0.39 3.47 16 11 C -0.09 -3.92 5.53 30.60 0.17 -3.75 16 12 C 0.02 1.33 4.97 29.85 0.15 1.48 16 13 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 14 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 17 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 C 0.63 17.06 8.60 178.99 1.54 18.60 16 22 O -0.60 -20.81 17.71 -4.71 -0.08 -20.89 16 23 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 25 H 0.13 -0.16 8.14 -2.38 -0.02 -0.18 16 26 H 0.29 -1.00 8.06 -2.91 -0.02 -1.02 16 27 H 0.18 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.16 2.85 8.11 -2.38 -0.02 2.83 16 29 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 30 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 31 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -87.39 318.45 6.56 -80.83 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: 1.09 Total: -0.78 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.80 Total: 15.73 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -4.11 Total: -88.09 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.25 Total: -54.20 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -87.39 6.56 -80.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781264865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.514 kcal (2) G-P(sol) polarization free energy of solvation -87.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds