Wall clock time and date at job start Mon Mar 30 2020 01:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47304 * 107.67923 * 3 2 1 5 5 C 1.36937 * 119.99700 * 264.72494 * 4 3 2 6 6 H 1.08007 * 119.99739 * 202.23324 * 5 4 3 7 7 C 1.38808 * 120.00532 * 22.22919 * 5 4 3 8 8 N 1.31626 * 119.99582 * 14.94096 * 7 5 4 9 9 Si 1.86795 * 120.00493 * 194.94346 * 7 5 4 10 10 H 1.48498 * 109.47307 * 84.99143 * 9 7 5 11 11 H 1.48498 * 109.47270 * 204.99069 * 9 7 5 12 12 H 1.48496 * 109.47346 * 324.99217 * 9 7 5 13 13 C 1.46496 * 120.00263 * 84.71833 * 4 3 2 14 14 C 1.50707 * 109.47105 * 270.00031 * 13 4 3 15 15 C 1.35099 * 126.41189 * 269.97581 * 14 13 4 16 16 C 1.50703 * 125.68918 * 0.02562 * 15 14 13 17 17 N 1.33515 * 108.62739 * 180.02562 * 15 14 13 18 18 C 1.32562 * 109.15787 * 0.02562 * 17 15 14 19 19 C 1.40935 * 132.32751 * 180.02562 * 18 17 15 20 20 C 1.36027 * 119.32515 * 179.97438 * 19 18 17 21 21 C 1.40469 * 119.69731 * 359.97438 * 20 19 18 22 22 C 1.34957 * 120.29736 * 0.02562 * 21 20 19 23 23 N 1.36491 * 120.60971 * 359.97438 * 22 21 20 24 24 H 4.40648 * 5.51484 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47643 * 347.67242 * 3 2 1 26 26 H 1.09001 * 109.46893 * 227.67199 * 3 2 1 27 27 H 0.97003 * 119.99730 * 179.97438 * 8 7 5 28 28 H 1.09009 * 109.47298 * 150.00780 * 13 4 3 29 29 H 1.08995 * 109.46958 * 30.00096 * 13 4 3 30 30 H 1.09002 * 109.46656 * 270.02748 * 16 15 14 31 31 H 1.09001 * 109.47140 * 30.01947 * 16 15 14 32 32 H 1.08997 * 109.47290 * 150.02798 * 16 15 14 33 33 H 1.08000 * 120.33424 * 359.97438 * 19 18 17 34 34 H 1.08003 * 120.14947 * 180.27713 * 20 19 18 35 35 H 1.07995 * 119.85139 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.69430 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4203 -1.3159 5 6 3.4656 -0.5197 -2.2549 6 1 4.1408 -0.2654 -3.0587 7 6 2.9340 -1.7994 -2.1738 8 7 1.9024 -2.0350 -1.3909 9 14 3.6826 -3.1871 -3.1754 10 1 4.8294 -3.7701 -2.4337 11 1 2.6588 -4.2371 -3.4089 12 1 4.1547 -2.6573 -4.4798 13 6 3.2676 1.8456 -1.6274 14 6 1.9795 2.3523 -2.2233 15 6 1.6554 2.3713 -3.5347 16 6 2.5277 1.8844 -4.6631 17 7 0.4334 2.8933 -3.6645 18 6 -0.0339 3.2104 -2.4652 19 6 -1.2505 3.7817 -2.0413 20 6 -1.4588 3.9971 -0.7144 21 6 -0.4623 3.6481 0.2121 22 6 0.6977 3.1018 -0.2090 23 7 0.9197 2.8802 -1.5374 24 1 -1.0502 0.0002 0.0001 25 1 3.0098 -1.0031 0.2194 26 1 3.0090 0.6928 0.7598 27 1 1.5307 -2.9292 -1.3345 28 1 4.0787 1.9870 -2.3418 29 1 3.4875 2.3980 -0.7139 30 1 3.1484 2.7051 -5.0225 31 1 3.1656 1.0757 -4.3062 32 1 1.9001 1.5203 -5.4764 33 1 -2.0097 4.0457 -2.7626 34 1 -2.3880 4.4300 -0.3744 35 1 -0.6252 3.8176 1.2661 36 1 1.4573 2.8376 0.5117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:06 Heat of formation + Delta-G solvation = 156.283650 kcal Electronic energy + Delta-G solvation = -20811.741341 eV Core-core repulsion = 17878.271727 eV Total energy + Delta-G solvation = -2933.469614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.54343 -38.42364 -37.80400 -34.56825 -33.44613 -33.38112 -32.23036 -30.23766 -28.82443 -27.96606 -26.87182 -24.10572 -23.55175 -22.62099 -21.02627 -19.37807 -18.33809 -18.08089 -17.57936 -17.04336 -16.59280 -16.30107 -15.69216 -15.41459 -15.16305 -15.13296 -14.09938 -13.98242 -13.78265 -13.50257 -13.37153 -13.23554 -12.85668 -12.71772 -12.57486 -12.46651 -12.23788 -12.09693 -11.98941 -11.71647 -10.99516 -10.75974 -10.67201 -10.27140 -9.37612 -8.97846 -8.46726 -7.79900 -5.28970 0.02333 0.54255 1.48097 1.50018 1.56077 1.86224 2.05163 2.42681 2.53672 2.63731 2.76308 3.34386 3.44356 3.71944 3.87528 3.98170 4.09180 4.13310 4.27004 4.33324 4.49215 4.62716 4.73892 4.83504 4.85082 4.93965 5.06809 5.16365 5.21346 5.30506 5.33520 5.45242 5.64897 5.70422 5.80051 5.93448 6.29950 6.41691 7.08365 7.12520 7.41412 7.79937 8.22824 9.18983 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.007752 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.380665 B = 3611.221500 C = 4182.561074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.103 4.103 3 C 0.269 3.731 4 N -0.583 5.583 5 C -0.255 4.255 6 H 0.084 0.916 7 C -0.044 4.044 8 N -0.915 5.915 9 Si 0.958 3.042 10 H -0.281 1.281 11 H -0.309 1.309 12 H -0.270 1.270 13 C 0.217 3.783 14 C -0.069 4.069 15 C 0.032 3.968 16 C -0.063 4.063 17 N -0.543 5.543 18 C 0.190 3.810 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.149 4.149 22 C 0.060 3.940 23 N -0.350 5.350 24 H 0.197 0.803 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.242 0.758 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 12.077 5.136 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.106 4.106 3 C 0.144 3.856 4 N -0.301 5.301 5 C -0.385 4.385 6 H 0.101 0.899 7 C -0.241 4.241 8 N -0.559 5.559 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.237 1.237 12 H -0.195 1.195 13 C 0.090 3.910 14 C -0.185 4.185 15 C -0.099 4.099 16 C -0.121 4.121 17 N -0.266 5.266 18 C -0.053 4.053 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.169 4.169 22 C -0.063 4.063 23 N -0.022 5.022 24 H 0.214 0.786 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.200 0.800 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.035 11.975 4.409 12.922 hybrid contribution -0.052 -1.576 -0.177 1.587 sum -2.087 10.399 4.232 11.420 Atomic orbital electron populations 1.24454 0.95803 1.07005 1.05090 1.24351 0.95561 0.94733 0.95960 1.17816 0.82735 0.99036 0.85994 1.44505 1.73882 1.00543 1.11209 1.19489 1.20537 0.90717 1.07724 0.89876 1.25669 0.96718 1.01010 1.00661 1.70196 1.23125 1.19804 1.42821 0.85419 0.77068 0.79533 0.79203 1.20805 1.23696 1.19519 1.19635 0.89099 0.83669 0.98613 1.22717 0.95138 1.08420 0.92178 1.20943 0.93004 1.01575 0.94382 1.20122 0.97135 1.01083 0.93758 1.70448 1.11593 1.22006 1.22521 1.21396 0.94088 1.05068 0.84771 1.20479 0.93202 1.01498 0.98201 1.21400 1.00562 0.97823 0.90873 1.21172 0.91762 1.01308 1.02676 1.21909 1.01242 1.00325 0.82804 1.42678 1.13666 1.38757 1.07105 0.78555 0.91283 0.91480 0.94823 0.89450 0.91048 0.89630 0.90621 0.92505 0.82815 0.80425 0.80023 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.72 18.41 74.32 1.37 -12.35 16 2 C -0.10 -4.76 9.92 31.13 0.31 -4.45 16 3 C 0.27 11.90 5.45 84.57 0.46 12.36 16 4 N -0.58 -26.35 2.48 -716.91 -1.78 -28.12 16 5 C -0.25 -12.79 8.84 84.03 0.74 -12.05 16 6 H 0.08 4.01 6.97 -2.91 -0.02 3.99 16 7 C -0.04 -2.36 5.00 84.86 0.42 -1.94 16 8 N -0.91 -51.90 9.22 21.65 0.20 -51.70 16 9 Si 0.96 44.05 29.58 68.60 2.03 46.07 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 C 0.22 8.25 5.72 85.64 0.49 8.74 16 14 C -0.07 -2.84 6.32 41.06 0.26 -2.58 16 15 C 0.03 1.41 7.06 41.58 0.29 1.71 16 16 C -0.06 -2.41 10.03 71.24 0.71 -1.70 16 17 N -0.54 -24.46 11.32 -182.40 -2.06 -26.53 16 18 C 0.19 7.56 7.81 134.11 1.05 8.61 16 19 C -0.11 -3.40 10.11 22.42 0.23 -3.17 16 20 C -0.08 -1.83 10.07 22.30 0.22 -1.61 16 21 C -0.15 -3.36 9.99 22.06 0.22 -3.14 16 22 C 0.06 1.78 8.84 83.21 0.74 2.52 16 23 N -0.35 -13.27 2.94 -338.87 -1.00 -14.27 16 24 H 0.20 7.95 7.80 -4.41 -0.03 7.92 16 25 H 0.07 3.44 6.63 -2.39 -0.02 3.43 16 26 H 0.07 2.43 7.97 -2.39 -0.02 2.41 16 27 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.09 3.10 7.66 -2.38 -0.02 3.08 16 29 H 0.07 2.30 7.94 -2.39 -0.02 2.28 16 30 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.08 3.03 5.92 -2.39 -0.01 3.01 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -69.73 308.13 5.98 -63.75 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.08 Total: 19.84 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 7.52 Total: -9.05 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.64 Total: -120.62 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.73 5.98 -63.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.036 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds