Wall clock time and date at job start Mon Mar 30 2020 01:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47324 * 113.33743 * 3 2 1 5 5 C 1.36935 * 119.99700 * 263.91290 * 4 3 2 6 6 H 1.07997 * 120.00339 * 199.38359 * 5 4 3 7 7 C 1.38817 * 119.99983 * 19.38569 * 5 4 3 8 8 N 1.31621 * 120.00183 * 22.28421 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 202.28479 * 7 5 4 10 10 H 1.48501 * 109.47144 * 59.99715 * 9 7 5 11 11 H 1.48501 * 109.47091 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47048 * 299.99858 * 9 7 5 13 13 C 1.46499 * 120.00260 * 83.91143 * 4 3 2 14 14 C 1.50699 * 109.47114 * 90.00101 * 13 4 3 15 15 C 1.35098 * 125.68416 * 94.71610 * 14 13 4 16 16 N 1.36843 * 107.17735 * 179.87661 * 15 14 13 17 17 C 1.36481 * 132.57042 * 180.10101 * 16 15 14 18 18 C 1.34953 * 120.61437 * 180.30922 * 17 16 15 19 19 C 1.40475 * 120.29277 * 0.02562 * 18 17 16 20 20 C 1.36016 * 119.69852 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.34126 * 180.02562 * 20 19 18 22 22 C 1.37078 * 106.99953 * 0.38057 * 16 15 14 23 23 N 1.32561 * 108.03375 * 359.76229 * 22 16 15 24 24 H 4.40648 * 5.51390 * 180.02562 * 4 1 2 25 25 H 1.09008 * 109.47112 * 233.33163 * 3 2 1 26 26 H 1.08999 * 109.47428 * 353.32781 * 3 2 1 27 27 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46770 * 210.00385 * 13 4 3 29 29 H 1.09007 * 109.46773 * 330.00117 * 13 4 3 30 30 H 1.08005 * 126.41524 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.69445 * 0.28465 * 17 16 15 32 32 H 1.07999 * 119.85610 * 179.97438 * 18 17 16 33 33 H 1.07999 * 120.14786 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.46987 * 269.94495 * 21 20 19 35 35 H 1.09002 * 109.46411 * 29.93723 * 21 20 19 36 36 H 1.09000 * 109.47067 * 149.93650 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5480 -1.2682 5 6 3.4813 -0.2955 -2.2895 6 1 4.1195 0.0558 -3.0868 7 6 3.0128 -1.6022 -2.3001 8 7 1.9284 -1.9181 -1.6244 9 14 3.9215 -2.9123 -3.2735 10 1 5.3109 -3.0334 -2.7635 11 1 3.2239 -4.2144 -3.1221 12 1 3.9524 -2.5306 -4.7083 13 6 3.2508 1.9978 -1.4438 14 6 4.6228 2.4473 -1.0119 15 6 5.6893 2.6144 -1.8241 16 7 6.7319 3.0310 -1.0417 17 6 8.0286 3.3494 -1.3243 18 6 8.8711 3.7350 -0.3430 19 6 8.4225 3.8132 0.9859 20 6 7.1329 3.4978 1.2815 21 6 6.6362 3.5772 2.7021 22 6 6.2651 3.0983 0.2454 23 7 4.9885 2.7411 0.2381 24 1 -1.0501 0.0001 0.0003 25 1 3.0091 0.6146 0.8244 26 1 3.0098 -1.0198 0.1194 27 1 1.6013 -2.8312 -1.6315 28 1 3.0995 2.2499 -2.4934 29 1 2.4965 2.4991 -0.8372 30 1 5.7139 2.4522 -2.8917 31 1 8.3840 3.2918 -2.3425 32 1 9.8949 3.9837 -0.5804 33 1 9.0988 4.1217 1.7694 34 1 6.7895 2.6171 3.1948 35 1 7.1863 4.3518 3.2364 36 1 5.5736 3.8203 2.7024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:15 Heat of formation + Delta-G solvation = 154.735898 kcal Electronic energy + Delta-G solvation = -19720.666752 eV Core-core repulsion = 16787.130022 eV Total energy + Delta-G solvation = -2933.536730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.60803 -38.72254 -37.55938 -35.35463 -33.55072 -33.35854 -31.64168 -30.41792 -28.09479 -27.94716 -27.46163 -24.03720 -23.60237 -22.66041 -21.23339 -19.33291 -18.49776 -17.98331 -17.62712 -17.13740 -16.64461 -16.33933 -15.56997 -15.39003 -15.09408 -14.97226 -14.84024 -14.12069 -13.78986 -13.51182 -13.40886 -13.23948 -12.80662 -12.68216 -12.55303 -12.50229 -12.41335 -12.23382 -11.96195 -11.43798 -10.94286 -10.80594 -10.72196 -10.35441 -9.53198 -8.95626 -8.61609 -7.82018 -5.26148 -0.06692 0.45994 1.45168 1.49293 1.54952 1.79476 1.95142 2.39603 2.52524 2.59667 2.66973 3.27379 3.37976 3.61823 3.91163 3.93542 4.06545 4.10998 4.18855 4.42272 4.44958 4.57568 4.79390 4.82178 4.88213 4.95528 5.00609 5.07230 5.15730 5.23284 5.25671 5.44972 5.62843 5.66635 5.74348 5.81019 6.27599 6.31561 7.05684 7.11061 7.35261 7.80164 8.27773 9.19593 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.005674 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.673394 B = 4933.911091 C = 5758.433376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.135 4.135 3 C 0.280 3.720 4 N -0.587 5.587 5 C -0.269 4.269 6 H 0.078 0.922 7 C -0.045 4.045 8 N -0.912 5.912 9 Si 0.961 3.039 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.273 1.273 13 C 0.225 3.775 14 C 0.041 3.959 15 C -0.098 4.098 16 N -0.368 5.368 17 C 0.031 3.969 18 C -0.136 4.136 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.097 4.097 22 C 0.197 3.803 23 N -0.525 5.525 24 H 0.226 0.774 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.247 0.753 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.195 0.805 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.227 12.886 3.509 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.138 4.138 3 C 0.155 3.845 4 N -0.306 5.306 5 C -0.399 4.399 6 H 0.095 0.905 7 C -0.242 4.242 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.213 1.213 11 H -0.224 1.224 12 H -0.199 1.199 13 C 0.097 3.903 14 C -0.093 4.093 15 C -0.229 4.229 16 N -0.040 5.040 17 C -0.090 4.090 18 C -0.156 4.156 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.154 4.154 22 C -0.047 4.047 23 N -0.247 5.247 24 H 0.243 0.757 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.212 0.788 31 H 0.205 0.795 32 H 0.209 0.791 33 H 0.194 0.806 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.615 12.668 4.079 19.766 hybrid contribution 0.103 -1.209 -1.395 1.849 sum 14.718 11.458 2.684 18.844 Atomic orbital electron populations 1.25000 0.96268 1.05218 1.04018 1.24540 0.95988 0.96355 0.96942 1.17421 0.83150 0.97189 0.86766 1.44027 1.74603 1.00565 1.11432 1.19410 1.23900 0.92865 1.03679 0.90458 1.25611 0.96857 1.00462 1.01227 1.70302 1.20633 1.17962 1.46706 0.85444 0.78054 0.78694 0.78852 1.21261 1.22357 1.19868 1.19111 0.88500 0.83552 0.99095 1.22113 0.98803 0.99521 0.88911 1.22628 0.86799 1.14507 0.99003 1.42965 1.09661 1.42083 1.09251 1.22339 0.81132 1.01967 1.03613 1.21302 1.01607 1.01220 0.91453 1.21392 0.93855 0.98681 0.98192 1.19394 0.92996 1.01112 0.94560 1.20622 1.01620 1.03292 0.89906 1.21390 0.91788 1.05946 0.85565 1.70527 1.09733 1.21632 1.22789 0.75712 0.93512 0.92316 0.94376 0.90747 0.93416 0.78792 0.79522 0.79110 0.80576 0.90929 0.87934 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.64 19.25 74.32 1.43 -12.21 16 2 C -0.14 -7.14 11.50 31.13 0.36 -6.78 16 3 C 0.28 14.92 5.41 84.57 0.46 15.38 16 4 N -0.59 -30.73 2.47 -716.89 -1.77 -32.50 16 5 C -0.27 -14.83 9.63 84.04 0.81 -14.03 16 6 H 0.08 4.07 7.92 -2.91 -0.02 4.04 16 7 C -0.05 -2.53 4.82 84.86 0.41 -2.12 16 8 N -0.91 -54.13 9.61 21.65 0.21 -53.92 16 9 Si 0.96 45.42 29.61 68.60 2.03 47.45 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.22 10.13 6.20 85.63 0.53 10.66 16 14 C 0.04 1.71 6.64 41.58 0.28 1.99 16 15 C -0.10 -3.51 11.66 83.19 0.97 -2.54 16 16 N -0.37 -11.65 2.95 -352.15 -1.04 -12.69 16 17 C 0.03 0.64 10.95 83.21 0.91 1.56 16 18 C -0.14 -2.07 9.99 22.06 0.22 -1.85 16 19 C -0.10 -1.71 9.72 22.30 0.22 -1.49 16 20 C -0.08 -2.05 5.90 -19.72 -0.12 -2.16 16 21 C -0.10 -2.16 10.03 71.24 0.71 -1.45 16 22 C 0.20 6.97 7.52 134.11 1.01 7.98 16 23 N -0.53 -22.29 11.31 -182.41 -2.06 -24.36 16 24 H 0.23 8.60 7.80 -4.41 -0.03 8.56 16 25 H 0.05 2.40 8.12 -2.38 -0.02 2.38 16 26 H 0.06 3.42 6.59 -2.39 -0.02 3.40 16 27 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.07 3.14 8.04 -2.39 -0.02 3.12 16 29 H 0.05 2.17 8.07 -2.38 -0.02 2.15 16 30 H 0.20 5.91 8.06 -2.91 -0.02 5.88 16 31 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 Total: -1.00 -74.59 317.88 6.63 -67.96 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.07 Total: 15.11 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 8.20 Total: -7.05 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.66 Total: -123.46 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.59 6.63 -67.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.691 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds