Wall clock time and date at job start Mon Mar 30 2020 00:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37355 * 125.82992 * 2 1 4 4 N 1.29405 * 108.83056 * 179.77250 * 3 2 1 5 5 N 1.40170 * 108.13517 * 0.38155 * 4 3 2 6 6 C 1.46506 * 126.34953 * 179.88266 * 5 4 3 7 7 C 1.52999 * 109.46684 * 269.68711 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 O 1.20818 * 120.00197 * 359.72236 * 8 7 6 10 10 O 1.34230 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.45198 * 117.00173 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47372 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47080 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99886 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99908 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46905 * 60.00056 * 17 15 13 19 19 H 1.48494 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46641 * 300.00141 * 17 15 13 21 21 C 1.34809 * 125.83255 * 180.02562 * 2 1 3 22 22 O 1.21820 * 126.30614 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47140 * 269.98060 * 1 2 3 24 24 H 1.09002 * 109.47213 * 29.97988 * 1 2 3 25 25 H 1.08997 * 109.46796 * 149.98161 * 1 2 3 26 26 H 1.07997 * 125.58875 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47212 * 149.68478 * 6 5 4 28 28 H 1.09001 * 109.46577 * 29.68404 * 6 5 4 29 29 H 1.09000 * 109.47486 * 59.99935 * 7 6 5 30 30 H 1.09001 * 109.47362 * 299.99212 * 7 6 5 31 31 H 1.09003 * 109.46718 * 299.99877 * 11 10 8 32 32 H 1.08998 * 109.47176 * 60.00127 * 11 10 8 33 33 H 1.08997 * 109.46822 * 300.00275 * 12 11 10 34 34 H 1.08998 * 109.47020 * 59.99843 * 12 11 10 35 35 H 0.96996 * 119.99888 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0007 6 6 4.7314 -1.5109 -0.0003 7 6 5.1479 -1.8056 -1.4427 8 6 6.3796 -2.6740 -1.4423 9 8 6.8764 -3.0174 -0.3959 10 8 6.9276 -3.0619 -2.6046 11 6 8.1130 -3.8969 -2.5284 12 6 8.5907 -4.2348 -3.9421 13 6 9.8214 -5.1010 -3.8628 14 1 10.2229 -5.3820 -2.9005 15 6 10.4347 -5.5347 -5.0190 16 7 9.9460 -5.1920 -6.1910 17 14 11.9598 -6.6089 -4.9209 18 1 11.6360 -7.8629 -4.1945 19 1 12.4235 -6.9367 -6.2930 20 1 13.0326 -5.8804 -4.1972 21 6 2.2542 -1.0929 -0.0005 22 8 1.8806 -2.2524 -0.0006 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.9250 2.1373 0.0004 27 1 4.5151 -2.4473 0.5140 28 1 5.5414 -0.9929 0.5132 29 1 5.3642 -0.8692 -1.9570 30 1 4.3379 -2.3235 -1.9563 31 1 8.9005 -3.3622 -1.9973 32 1 7.8754 -4.8174 -1.9951 33 1 7.8034 -4.7692 -4.4736 34 1 8.8285 -3.3142 -4.4750 35 1 10.3777 -5.4968 -7.0044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815270088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:08 Heat of formation + Delta-G solvation = -72.658068 kcal Electronic energy + Delta-G solvation = -19545.633912 eV Core-core repulsion = 16159.094625 eV Total energy + Delta-G solvation = -3386.539286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42448 -41.54668 -38.44720 -37.99398 -36.68128 -35.47010 -33.94666 -32.39931 -31.05491 -28.45083 -27.26313 -25.89132 -23.54753 -22.99270 -22.30350 -21.68085 -19.27595 -18.57559 -17.97772 -17.93245 -17.86521 -17.21669 -16.91292 -16.67507 -16.45072 -15.67190 -15.38382 -14.83280 -14.45014 -14.39328 -14.28322 -13.92152 -13.49728 -13.28939 -13.14776 -13.03853 -12.88793 -12.59946 -12.59255 -12.50128 -11.93445 -11.58971 -11.50616 -11.43590 -11.38858 -11.04260 -10.62165 -9.69669 -8.28247 -6.41876 0.64686 1.07487 1.08273 1.40216 1.44297 1.50590 1.52883 1.75090 2.27981 2.40359 3.06072 3.41645 3.47358 3.77833 3.91240 4.11787 4.20369 4.20892 4.26101 4.26423 4.54398 4.58509 4.61495 4.67506 4.83041 4.93436 5.05203 5.23205 5.44253 5.50491 5.68764 5.72274 6.04516 6.61589 6.62556 6.72072 6.91521 7.27996 8.84339 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.051699 B = 0.002710 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.465882 B =10329.163178 C =10406.321631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.283 3.717 4 N -0.315 5.315 5 N -0.459 5.459 6 C 0.179 3.821 7 C -0.118 4.118 8 C 0.466 3.534 9 O -0.537 6.537 10 O -0.366 6.366 11 C 0.089 3.911 12 C 0.030 3.970 13 C -0.552 4.552 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.975 3.025 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.625 3.375 22 O -0.599 6.599 23 H 0.085 0.915 24 H 0.134 0.866 25 H 0.070 0.930 26 H 0.292 0.708 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.078 17.309 12.576 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.014 4.014 4 N -0.137 5.137 5 N -0.278 5.278 6 C 0.057 3.943 7 C -0.157 4.157 8 C 0.310 3.690 9 O -0.428 6.428 10 O -0.282 6.282 11 C 0.016 3.984 12 C -0.008 4.008 13 C -0.589 4.589 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.798 3.202 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.189 1.189 21 C 0.324 3.676 22 O -0.476 6.476 23 H 0.104 0.896 24 H 0.152 0.848 25 H 0.089 0.911 26 H 0.307 0.693 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.140 16.616 12.688 28.345 hybrid contribution 0.140 -1.127 -0.241 1.161 sum -19.000 15.489 12.447 27.492 Atomic orbital electron populations 1.22187 0.71713 1.06144 1.04857 1.46183 1.10252 1.05900 1.66232 1.27202 0.84297 0.96138 0.93805 1.77083 1.20457 0.90115 1.26002 1.48919 1.05657 1.04355 1.68901 1.21047 0.84265 0.93872 0.95099 1.21683 0.92956 1.00821 1.00194 1.23836 0.85302 0.78359 0.81469 1.90635 1.63339 1.55221 1.33608 1.86511 1.43500 1.63336 1.34843 1.23209 0.82791 0.92049 1.00310 1.18991 0.95457 0.96140 0.90173 1.21355 1.11675 1.32362 0.93548 0.91575 1.25991 1.01160 0.97552 0.94666 1.70093 1.42104 1.46262 0.98232 0.85355 0.78436 0.78870 0.77528 1.19086 1.20445 1.18918 1.17159 0.82874 0.85587 0.81985 1.91065 1.78528 1.17415 1.60636 0.89609 0.84821 0.91136 0.69326 0.89016 0.86876 0.85037 0.87047 0.91723 0.92125 0.97693 0.97420 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.05 127.77 1.41 1.87 16 2 N -0.56 -7.45 3.14 -683.68 -2.15 -9.59 16 3 C 0.28 2.27 12.66 179.82 2.28 4.54 16 4 N -0.32 -5.44 12.53 -59.42 -0.74 -6.18 16 5 N -0.46 -10.63 3.63 -478.00 -1.73 -12.36 16 6 C 0.18 4.40 5.68 86.38 0.49 4.89 16 7 C -0.12 -3.03 6.14 29.85 0.18 -2.84 16 8 C 0.47 16.23 7.96 71.24 0.57 16.80 16 9 O -0.54 -20.87 15.73 21.99 0.35 -20.53 16 10 O -0.37 -15.04 10.22 -51.41 -0.53 -15.56 16 11 C 0.09 4.11 5.40 71.98 0.39 4.50 16 12 C 0.03 1.62 5.35 29.85 0.16 1.78 16 13 C -0.55 -31.76 9.11 25.60 0.23 -31.52 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C 0.01 0.30 5.46 84.65 0.46 0.77 16 16 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 17 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 C 0.62 15.48 8.60 178.99 1.54 17.02 16 22 O -0.60 -20.01 17.71 -4.73 -0.08 -20.10 16 23 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 26 H 0.29 -1.71 8.06 -2.91 -0.02 -1.73 16 27 H 0.09 2.49 8.07 -2.39 -0.02 2.47 16 28 H 0.11 2.59 8.10 -2.39 -0.02 2.57 16 29 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.06 2.89 8.13 -2.39 -0.02 2.87 16 32 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -82.19 317.98 6.23 -75.97 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.09 Total: 0.47 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 7.71 Total: 17.80 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -4.34 Total: -84.18 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.26 Total: -56.18 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -82.19 6.23 -75.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815270088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -82.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds