Wall clock time and date at job start Mon Mar 30 2020 00:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37880 * 120.00482 * 65.37227 * 4 2 1 7 7 N 1.31515 * 120.00110 * 184.89557 * 6 4 2 8 8 Si 1.86800 * 119.99570 * 5.16715 * 6 4 2 9 9 H 1.48499 * 109.47189 * 269.72164 * 8 6 4 10 10 H 1.48497 * 109.47262 * 29.72703 * 8 6 4 11 11 H 1.48499 * 109.46978 * 149.72477 * 8 6 4 12 12 O 1.45198 * 109.47247 * 120.00000 * 2 1 3 13 13 C 1.34226 * 116.99837 * 270.00234 * 12 2 1 14 14 O 1.20826 * 120.00738 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99776 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46878 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46885 * 180.02562 * 16 15 13 18 18 N 1.40176 * 126.34724 * 269.68394 * 17 16 15 19 19 C 1.29404 * 108.13824 * 179.87811 * 18 17 16 20 20 N 1.37358 * 108.83019 * 0.38644 * 19 18 17 21 21 C 1.46498 * 125.83014 * 179.76948 * 20 19 18 22 22 C 1.34815 * 108.33384 * 359.75334 * 20 19 18 23 23 O 1.21821 * 126.30177 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 25 25 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 26 26 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 27 27 H 0.96995 * 120.00010 * 355.26674 * 7 6 4 28 28 H 1.08994 * 109.47097 * 299.99942 * 15 13 12 29 29 H 1.09003 * 109.46753 * 59.99941 * 15 13 12 30 30 H 1.09003 * 109.47496 * 299.99762 * 16 15 13 31 31 H 1.08997 * 109.47596 * 60.00260 * 16 15 13 32 32 H 1.07999 * 125.58382 * 180.14364 * 19 18 17 33 33 H 1.08999 * 109.47342 * 269.97452 * 21 20 19 34 34 H 1.08991 * 109.47310 * 29.97953 * 21 20 19 35 35 H 1.09002 * 109.46642 * 149.98039 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4798 7 7 2.1461 -0.8448 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3175 -2.7140 10 1 1.3161 2.3281 -1.4626 11 1 1.4542 2.1615 -3.8779 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9982 1.2519 2.2504 15 6 2.7183 -0.5772 3.5495 16 6 2.8635 0.4890 4.6370 17 7 3.3513 -0.1342 5.8699 18 7 2.5633 -0.6699 6.8981 19 6 3.3539 -1.1299 7.8135 20 7 4.6538 -0.9084 7.4289 21 6 5.8486 -1.2773 8.1921 22 6 4.6422 -0.2938 6.2290 23 8 5.6176 0.0538 5.5873 24 1 -0.3633 0.4339 0.9316 25 1 -0.3633 0.5898 -0.8416 26 1 -0.3633 -1.0237 -0.0900 27 1 2.6359 -1.6778 -3.4732 28 1 2.0088 -1.3369 3.8774 29 1 3.6872 -1.0409 3.3639 30 1 3.5733 1.2485 4.3089 31 1 1.8949 0.9531 4.8227 32 1 3.0425 -1.6061 8.7314 33 1 6.1281 -0.4543 8.8498 34 1 5.6387 -2.1645 8.7893 35 1 6.6681 -1.4874 7.5048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815948541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:43 Heat of formation + Delta-G solvation = -42.597270 kcal Electronic energy + Delta-G solvation = -20186.979036 eV Core-core repulsion = 16801.743284 eV Total energy + Delta-G solvation = -3385.235752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62993 -39.80407 -37.43354 -36.40812 -35.60578 -33.29304 -32.93484 -30.67373 -29.89635 -27.77878 -25.33344 -24.80444 -22.74423 -21.67564 -21.00383 -19.63354 -18.04320 -17.68868 -17.02627 -16.83827 -16.37244 -15.83647 -15.65076 -15.45648 -14.59421 -14.21566 -13.92519 -13.59993 -13.15121 -13.07527 -12.90479 -12.74687 -12.37397 -12.24430 -12.09642 -11.71268 -11.58518 -11.31321 -10.65887 -10.44687 -10.38269 -10.13396 -10.04763 -9.77432 -9.66011 -8.79623 -8.76475 -8.57881 -6.61328 -4.26318 1.49818 1.69077 2.46424 2.76372 2.82261 3.30639 3.40866 3.52823 3.54352 4.16755 4.36560 4.43482 4.68965 4.72242 4.82623 5.03987 5.11387 5.15719 5.28174 5.47192 5.52773 5.66103 5.77396 5.99476 6.18888 6.27977 6.33983 6.43866 6.62393 7.08166 7.35303 7.37591 7.76802 7.83682 8.23274 8.42817 8.81790 9.43578 10.81651 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.003575 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.435615 B = 7831.321895 C = 8018.999930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.188 3.812 3 H 0.047 0.953 4 C -0.600 4.600 5 H 0.069 0.931 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.047 2.953 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.283 1.283 12 O -0.343 6.343 13 C 0.461 3.539 14 O -0.523 6.523 15 C -0.135 4.135 16 C 0.174 3.826 17 N -0.450 5.450 18 N -0.278 5.278 19 C 0.251 3.749 20 N -0.564 5.564 21 C 0.099 3.901 22 C 0.642 3.358 23 O -0.549 6.549 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.231 0.769 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -1.706 26.152 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.638 4.638 5 H 0.087 0.913 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.875 3.125 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.209 1.209 12 O -0.258 6.258 13 C 0.303 3.697 14 O -0.414 6.414 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.271 5.271 18 N -0.099 5.099 19 C -0.048 4.048 20 N -0.293 5.293 21 C -0.043 4.043 22 C 0.341 3.659 23 O -0.422 6.422 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.514 0.139 24.137 24.185 hybrid contribution 1.250 -1.360 1.379 2.305 sum 2.764 -1.221 25.516 25.695 Atomic orbital electron populations 1.22461 0.98237 1.01907 0.99758 1.21116 0.90786 0.94643 0.80033 0.93528 1.22017 1.40943 1.11168 0.89693 0.91295 1.25702 0.96444 1.03619 0.91193 1.70816 1.35965 1.16890 1.29792 0.83977 0.76570 0.75464 0.76441 1.20524 1.19966 1.20926 1.86535 1.75478 1.42997 1.20767 1.23033 0.74737 0.85874 0.86023 1.90612 1.49198 1.16742 1.84874 1.21675 1.04745 1.00068 0.90918 1.21253 1.02765 0.93288 0.77354 1.49007 1.03830 1.55969 1.18254 1.77022 1.19741 1.15868 0.97295 1.25938 0.79988 0.98792 1.00131 1.45956 1.08207 1.55163 1.20023 1.21816 0.85116 1.01356 0.96012 1.16824 0.84846 0.82001 0.82211 1.91123 1.35945 1.57351 1.57745 0.94600 0.92199 0.92080 0.91877 0.87359 0.87590 0.87521 0.87541 0.75312 0.90910 0.89322 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.14 37.16 0.34 -3.47 16 2 C 0.19 4.86 2.14 -27.88 -0.06 4.80 16 3 H 0.05 1.26 5.66 -51.93 -0.29 0.97 16 4 C -0.60 -17.57 9.25 -34.44 -0.32 -17.89 16 5 H 0.07 2.16 8.04 -52.49 -0.42 1.74 16 6 C 0.04 1.05 5.43 -17.82 -0.10 0.95 16 7 N -0.90 -27.76 13.70 55.43 0.76 -27.00 16 8 Si 1.05 25.67 25.28 -169.99 -4.30 21.38 16 9 H -0.28 -6.37 6.82 56.52 0.39 -5.98 16 10 H -0.27 -6.47 6.35 56.52 0.36 -6.11 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 O -0.34 -8.07 9.86 -39.25 -0.39 -8.46 16 13 C 0.46 9.22 7.93 36.01 0.29 9.50 16 14 O -0.52 -11.43 15.20 -18.75 -0.29 -11.71 16 15 C -0.14 -2.02 6.14 -27.88 -0.17 -2.19 16 16 C 0.17 2.40 5.68 -4.04 -0.02 2.38 16 17 N -0.45 -5.86 3.63 -65.12 -0.24 -6.09 16 18 N -0.28 -2.94 12.53 29.87 0.37 -2.57 16 19 C 0.25 1.66 12.66 -89.12 -1.13 0.53 16 20 N -0.56 -4.88 3.14 -130.11 -0.41 -5.29 16 21 C 0.10 0.45 11.05 59.85 0.66 1.11 16 22 C 0.64 8.73 8.60 -86.74 -0.75 7.98 16 23 O -0.55 -9.49 17.71 5.08 0.09 -9.40 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.35 4.41 -51.93 -0.23 1.13 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.27 8.28 8.72 -40.82 -0.36 7.93 16 28 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.11 1.57 8.07 -51.93 -0.42 1.15 16 31 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 32 H 0.23 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 35 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -37.30 307.32 -5.39 -42.69 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.37 Total: -1.87 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.26 Total: 3.70 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.49 Total: -40.95 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.58 Total: -29.56 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.30 Total: 21.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.30 -5.39 -42.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815948541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.092 kcal (2) G-P(sol) polarization free energy of solvation -37.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds