Wall clock time and date at job start Mon Mar 30 2020 00:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37880 * 120.00482 * 65.37227 * 4 2 1 7 7 N 1.31515 * 120.00110 * 184.89557 * 6 4 2 8 8 Si 1.86800 * 119.99570 * 5.16715 * 6 4 2 9 9 H 1.48499 * 109.47189 * 269.72164 * 8 6 4 10 10 H 1.48497 * 109.47262 * 29.72703 * 8 6 4 11 11 H 1.48499 * 109.46978 * 149.72477 * 8 6 4 12 12 O 1.45198 * 109.47247 * 120.00000 * 2 1 3 13 13 C 1.34226 * 116.99837 * 270.00234 * 12 2 1 14 14 O 1.20826 * 120.00738 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99776 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46878 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46885 * 180.02562 * 16 15 13 18 18 N 1.40176 * 126.34724 * 269.68394 * 17 16 15 19 19 C 1.29404 * 108.13824 * 179.87811 * 18 17 16 20 20 N 1.37358 * 108.83019 * 0.38644 * 19 18 17 21 21 C 1.46498 * 125.83014 * 179.76948 * 20 19 18 22 22 C 1.34815 * 108.33384 * 359.75334 * 20 19 18 23 23 O 1.21821 * 126.30177 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 25 25 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 26 26 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 27 27 H 0.96995 * 120.00010 * 355.26674 * 7 6 4 28 28 H 1.08994 * 109.47097 * 299.99942 * 15 13 12 29 29 H 1.09003 * 109.46753 * 59.99941 * 15 13 12 30 30 H 1.09003 * 109.47496 * 299.99762 * 16 15 13 31 31 H 1.08997 * 109.47596 * 60.00260 * 16 15 13 32 32 H 1.07999 * 125.58382 * 180.14364 * 19 18 17 33 33 H 1.08999 * 109.47342 * 269.97452 * 21 20 19 34 34 H 1.08991 * 109.47310 * 29.97953 * 21 20 19 35 35 H 1.09002 * 109.46642 * 149.98039 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4798 7 7 2.1461 -0.8448 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3175 -2.7140 10 1 1.3161 2.3281 -1.4626 11 1 1.4542 2.1615 -3.8779 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9982 1.2519 2.2504 15 6 2.7183 -0.5772 3.5495 16 6 2.8635 0.4890 4.6370 17 7 3.3513 -0.1342 5.8699 18 7 2.5633 -0.6699 6.8981 19 6 3.3539 -1.1299 7.8135 20 7 4.6538 -0.9084 7.4289 21 6 5.8486 -1.2773 8.1921 22 6 4.6422 -0.2938 6.2290 23 8 5.6176 0.0538 5.5873 24 1 -0.3633 0.4339 0.9316 25 1 -0.3633 0.5898 -0.8416 26 1 -0.3633 -1.0237 -0.0900 27 1 2.6359 -1.6778 -3.4732 28 1 2.0088 -1.3369 3.8774 29 1 3.6872 -1.0409 3.3639 30 1 3.5733 1.2485 4.3089 31 1 1.8949 0.9531 4.8227 32 1 3.0425 -1.6061 8.7314 33 1 6.1281 -0.4543 8.8498 34 1 5.6387 -2.1645 8.7893 35 1 6.6681 -1.4874 7.5048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815948541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:43 Heat of formation + Delta-G solvation = -68.406883 kcal Electronic energy + Delta-G solvation = -20188.098225 eV Core-core repulsion = 16801.743284 eV Total energy + Delta-G solvation = -3386.354941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.43583 -41.51547 -38.46335 -38.02381 -36.67765 -35.41711 -33.94912 -32.55236 -31.02852 -28.41536 -27.06986 -26.23540 -23.76231 -23.01767 -22.14366 -21.36560 -19.93432 -19.09560 -18.24087 -17.92039 -17.54881 -17.18583 -16.84446 -16.61721 -15.88014 -15.53021 -15.10112 -14.95194 -14.80719 -14.53711 -14.12663 -13.93462 -13.63474 -13.50899 -13.42318 -13.25916 -12.90495 -12.59282 -12.51331 -12.10421 -11.86674 -11.59247 -11.54933 -11.41295 -11.06524 -10.94580 -10.80122 -9.71144 -8.96166 -6.62784 0.63902 1.07230 1.14052 1.35828 1.47412 1.50907 1.63973 1.86445 2.29888 2.33414 2.90290 3.40836 3.48535 3.79553 3.90294 4.10575 4.19267 4.24324 4.26067 4.46140 4.52926 4.55545 4.58589 4.59786 4.77541 4.81453 4.92185 5.03888 5.24404 5.39527 5.67878 5.74169 5.88877 6.31657 6.60464 6.77186 6.90387 7.17288 8.46232 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.003575 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.435615 B = 7831.321895 C = 8018.999930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 H 0.036 0.964 4 C -0.613 4.613 5 H 0.030 0.970 6 C -0.009 4.009 7 N -0.926 5.926 8 Si 1.083 2.917 9 H -0.245 1.245 10 H -0.261 1.261 11 H -0.278 1.278 12 O -0.359 6.359 13 C 0.459 3.541 14 O -0.540 6.540 15 C -0.117 4.117 16 C 0.181 3.819 17 N -0.458 5.458 18 N -0.315 5.315 19 C 0.283 3.717 20 N -0.558 5.558 21 C 0.091 3.909 22 C 0.624 3.376 23 O -0.600 6.600 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.258 0.742 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.293 0.707 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -1.614 29.274 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 H 0.054 0.946 4 C -0.650 4.650 5 H 0.048 0.952 6 C -0.208 4.208 7 N -0.560 5.560 8 Si 0.903 3.097 9 H -0.170 1.170 10 H -0.186 1.186 11 H -0.204 1.204 12 O -0.275 6.275 13 C 0.303 3.697 14 O -0.431 6.431 15 C -0.156 4.156 16 C 0.059 3.941 17 N -0.278 5.278 18 N -0.136 5.136 19 C -0.014 4.014 20 N -0.285 5.285 21 C -0.049 4.049 22 C 0.323 3.677 23 O -0.477 6.477 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.308 0.692 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.104 0.185 27.333 27.334 hybrid contribution 1.799 -1.504 0.594 2.420 sum 1.904 -1.319 27.928 28.024 Atomic orbital electron populations 1.22341 0.95579 1.02454 1.01334 1.20879 0.92706 0.93336 0.79841 0.94628 1.22172 1.40732 1.10080 0.92064 0.95171 1.27157 0.96380 1.06502 0.90746 1.70926 1.37380 1.16937 1.30788 0.83568 0.77767 0.71308 0.77065 1.16997 1.18625 1.20430 1.86516 1.76160 1.43624 1.21248 1.23879 0.73878 0.85713 0.86188 1.90594 1.49898 1.17573 1.85076 1.21656 1.04783 1.00561 0.88553 1.21022 1.02732 0.92543 0.77793 1.48911 1.04092 1.56202 1.18569 1.77068 1.20201 1.18471 0.97847 1.27220 0.78291 0.95547 1.00364 1.46179 1.10241 1.53609 1.18508 1.22186 0.83296 1.03835 0.95557 1.17186 0.84420 0.82528 0.83609 1.91067 1.37473 1.59574 1.59622 0.92125 0.91623 0.91931 0.93320 0.85035 0.87757 0.89276 0.86626 0.69191 0.89568 0.84739 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.06 9.14 71.98 0.66 -6.40 16 2 C 0.19 9.64 2.14 29.85 0.06 9.70 16 3 H 0.04 1.92 5.66 -2.39 -0.01 1.91 16 4 C -0.61 -36.80 9.25 25.60 0.24 -36.57 16 5 H 0.03 1.98 8.04 -2.91 -0.02 1.96 16 6 C -0.01 -0.51 5.43 84.66 0.46 -0.05 16 7 N -0.93 -58.33 13.70 21.45 0.29 -58.03 16 8 Si 1.08 50.70 25.28 68.60 1.73 52.44 16 9 H -0.25 -10.20 6.82 99.48 0.68 -9.52 16 10 H -0.26 -11.66 6.35 99.48 0.63 -11.02 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 O -0.36 -17.04 9.86 -51.38 -0.51 -17.55 16 13 C 0.46 18.27 7.93 71.24 0.56 18.83 16 14 O -0.54 -23.38 15.20 21.96 0.33 -23.05 16 15 C -0.12 -3.44 6.14 29.85 0.18 -3.25 16 16 C 0.18 4.94 5.68 86.38 0.49 5.43 16 17 N -0.46 -11.51 3.63 -478.01 -1.73 -13.24 16 18 N -0.31 -5.82 12.53 -59.42 -0.74 -6.56 16 19 C 0.28 2.57 12.66 179.82 2.28 4.84 16 20 N -0.56 -8.20 3.14 -683.69 -2.15 -10.35 16 21 C 0.09 0.56 11.05 127.77 1.41 1.97 16 22 C 0.62 16.66 8.60 178.99 1.54 18.20 16 23 O -0.60 -21.43 17.71 -4.74 -0.08 -21.52 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.07 2.80 4.41 -2.39 -0.01 2.79 16 26 H 0.06 2.70 8.14 -2.39 -0.02 2.69 16 27 H 0.26 16.42 8.72 -92.71 -0.81 15.62 16 28 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.09 2.71 8.07 -2.39 -0.02 2.69 16 31 H 0.12 2.90 8.10 -2.39 -0.02 2.88 16 32 H 0.29 -1.50 8.06 -2.91 -0.02 -1.53 16 33 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 Total: -1.00 -85.43 307.32 5.99 -79.43 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.96 Total: 5.72 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.88 Total: 12.71 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -4.33 Total: -88.19 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -0.26 Total: -62.12 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.73 Total: 52.44 kcal Total: -85.43 5.99 -79.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815948541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.027 kcal (2) G-P(sol) polarization free energy of solvation -85.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds