Wall clock time and date at job start Mon Mar 30 2020 00:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47134 * 180.02562 * 15 13 12 17 17 N 1.46496 * 109.47193 * 180.02562 * 16 15 13 18 18 N 1.40169 * 126.35017 * 269.68551 * 17 16 15 19 19 C 1.29399 * 108.13953 * 179.87459 * 18 17 16 20 20 N 1.37349 * 108.83103 * 0.38752 * 19 18 17 21 21 C 1.46503 * 125.83271 * 179.77094 * 20 19 18 22 22 C 1.34817 * 108.33574 * 359.74911 * 20 19 18 23 23 O 1.21819 * 126.30073 * 180.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 29 29 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 30 30 H 1.09006 * 109.46707 * 299.99777 * 16 15 13 31 31 H 1.08997 * 109.47580 * 59.99612 * 16 15 13 32 32 H 1.08002 * 125.58133 * 180.13479 * 19 18 17 33 33 H 1.08997 * 109.47369 * 269.97585 * 21 20 19 34 34 H 1.09001 * 109.46984 * 29.97885 * 21 20 19 35 35 H 1.09005 * 109.46988 * 149.97511 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 6 2.8644 0.4895 -4.6369 17 7 3.3520 -0.1337 -5.8698 18 7 4.6928 -0.2938 -6.2457 19 6 4.7207 -0.8883 -7.3947 20 7 3.4308 -1.1236 -7.8037 21 6 3.0328 -1.7735 -9.0549 22 6 2.5935 -0.6548 -6.8567 23 8 1.3763 -0.6947 -6.8865 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 3.6884 -1.0398 -3.3633 29 1 2.0105 -1.3370 -3.8774 30 1 1.8954 0.9527 -4.8230 31 1 3.5733 1.2494 -4.3085 32 1 5.6123 -1.1523 -7.9442 33 1 2.9156 -1.0204 -9.8342 34 1 3.7997 -2.4885 -9.3529 35 1 2.0869 -2.2951 -8.9085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815948542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:45 Heat of formation + Delta-G solvation = -34.074414 kcal Electronic energy + Delta-G solvation = -20178.562335 eV Core-core repulsion = 16793.696162 eV Total energy + Delta-G solvation = -3384.866174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.62581 -39.81763 -37.43454 -36.42110 -35.61119 -33.25838 -32.91884 -30.77985 -29.94044 -27.77738 -25.41459 -25.08111 -22.77406 -21.78495 -21.09748 -19.71378 -18.01527 -17.24665 -16.94415 -16.60123 -16.27005 -16.01822 -15.62137 -15.50281 -14.78064 -14.36125 -13.98950 -13.70198 -13.15173 -13.06087 -12.94035 -12.68947 -12.37633 -12.26820 -12.12633 -11.80853 -11.54340 -11.29283 -10.89804 -10.44601 -10.37658 -10.23649 -10.03225 -9.78921 -9.60772 -9.13492 -8.78792 -8.69193 -6.23009 -4.25570 1.50459 1.70660 2.46175 2.76185 2.82844 3.19196 3.31234 3.33456 3.52014 4.17334 4.26570 4.44797 4.69594 4.72900 4.82604 5.04918 5.08167 5.11199 5.28533 5.48320 5.50460 5.68106 5.77589 6.00054 6.15865 6.27768 6.29017 6.39806 6.59776 7.02187 7.34345 7.38531 7.50187 7.83406 8.19461 8.55605 8.83699 9.33887 10.89125 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.046000 B = 0.003511 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.551777 B = 7973.631486 C = 8129.953955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.190 3.810 3 H 0.048 0.952 4 C -0.526 4.526 5 H 0.087 0.913 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.339 6.339 13 C 0.462 3.538 14 O -0.523 6.523 15 C -0.135 4.135 16 C 0.174 3.826 17 N -0.449 5.449 18 N -0.277 5.277 19 C 0.250 3.750 20 N -0.564 5.564 21 C 0.099 3.901 22 C 0.642 3.358 23 O -0.551 6.551 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -1.282 -24.941 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.564 4.564 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.254 6.254 13 C 0.305 3.695 14 O -0.414 6.414 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.270 5.270 18 N -0.098 5.098 19 C -0.049 4.049 20 N -0.294 5.294 21 C -0.043 4.043 22 C 0.342 3.658 23 O -0.424 6.424 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.664 -0.538 -23.866 24.323 hybrid contribution -0.961 0.415 -0.317 1.094 sum 3.703 -0.123 -24.183 24.466 Atomic orbital electron populations 1.22529 0.98407 1.01933 0.99906 1.20958 0.90533 0.94484 0.80347 0.93477 1.20789 1.33445 1.14871 0.87267 0.89483 1.24736 0.95649 0.96771 0.95224 1.69841 1.44735 1.39943 0.98006 0.86954 0.80752 0.83589 0.77791 1.19976 1.21664 1.18665 1.86513 1.75503 1.42748 1.20673 1.23023 0.74711 0.85818 0.85961 1.90616 1.49156 1.16799 1.84842 1.21673 1.04863 1.00040 0.90805 1.21256 1.01853 0.93540 0.78056 1.49004 1.02594 1.56082 1.19331 1.77044 0.99673 1.20251 1.12786 1.25948 0.89174 0.96668 0.93080 1.45954 1.06922 1.55460 1.21015 1.21815 1.02849 0.97663 0.81964 1.16816 0.85857 0.81721 0.81455 1.91111 1.08275 1.63659 1.79345 0.92486 0.91747 0.94322 0.92045 0.87119 0.87612 0.87611 0.87457 0.75293 0.90931 0.89309 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.03 37.16 0.34 -3.63 16 2 C 0.19 4.87 2.15 -27.89 -0.06 4.81 16 3 H 0.05 1.26 6.21 -51.93 -0.32 0.94 16 4 C -0.53 -15.25 9.48 -34.44 -0.33 -15.57 16 5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 6 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 7 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 8 Si 0.88 21.85 24.37 -169.99 -4.14 17.70 16 9 H -0.27 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 O -0.34 -7.82 9.86 -39.25 -0.39 -8.21 16 13 C 0.46 9.08 7.93 36.01 0.29 9.37 16 14 O -0.52 -11.30 15.20 -18.75 -0.29 -11.58 16 15 C -0.13 -1.98 6.14 -27.88 -0.17 -2.15 16 16 C 0.17 2.36 5.68 -4.04 -0.02 2.34 16 17 N -0.45 -5.80 3.63 -65.12 -0.24 -6.03 16 18 N -0.28 -2.95 12.53 29.87 0.37 -2.58 16 19 C 0.25 1.66 12.66 -89.13 -1.13 0.53 16 20 N -0.56 -4.80 3.14 -130.10 -0.41 -5.20 16 21 C 0.10 0.43 11.05 59.85 0.66 1.09 16 22 C 0.64 8.55 8.60 -86.73 -0.75 7.80 16 23 O -0.55 -9.24 17.71 5.08 0.09 -9.15 16 24 H 0.06 1.34 3.27 -51.93 -0.17 1.17 16 25 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.11 1.50 8.07 -51.93 -0.42 1.09 16 31 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.23 0.20 8.06 -52.49 -0.42 -0.22 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -36.84 306.07 -5.19 -42.04 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.31 Total: -2.26 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.27 Total: 6.79 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.50 Total: -39.95 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.58 Total: -28.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.84 -5.19 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815948542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.963 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds