Wall clock time and date at job start Mon Mar 30 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00594 * 2 1 4 4 C 1.52992 * 109.47366 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47387 * 63.48021 * 4 3 2 6 6 C 1.36934 * 120.00085 * 83.23698 * 5 4 3 7 7 H 1.08004 * 119.99770 * 170.37329 * 6 5 4 8 8 C 1.38812 * 120.00043 * 350.36817 * 6 5 4 9 9 N 1.31617 * 119.99763 * 2.68546 * 8 6 5 10 10 Si 1.86801 * 119.99961 * 182.67654 * 8 6 5 11 11 H 1.48499 * 109.47102 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46677 * 120.00104 * 10 8 6 13 13 H 1.48495 * 109.47694 * 240.00247 * 10 8 6 14 14 C 1.46505 * 119.99861 * 263.23730 * 5 4 3 15 15 C 1.50694 * 109.47278 * 263.64117 * 14 5 4 16 16 C 1.38171 * 120.01315 * 258.35229 * 15 14 5 17 17 C 1.38434 * 120.02995 * 179.79162 * 16 15 14 18 18 F 1.35102 * 119.97461 * 180.25180 * 17 16 15 19 19 C 1.38480 * 120.06191 * 0.45998 * 17 16 15 20 20 C 1.38131 * 120.02587 * 359.78866 * 19 17 16 21 21 C 1.38686 * 120.01920 * 78.62212 * 15 14 5 22 22 O 1.35952 * 120.02475 * 0.02562 * 21 15 14 23 23 H 1.08992 * 109.47547 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46895 * 300.00143 * 1 2 3 25 25 H 1.09001 * 109.46999 * 59.99899 * 1 2 3 26 26 H 1.08996 * 109.46725 * 59.99959 * 3 2 1 27 27 H 1.08999 * 109.46662 * 300.00184 * 3 2 1 28 28 H 1.09000 * 109.47450 * 303.47958 * 4 3 2 29 29 H 1.09001 * 109.47227 * 183.47959 * 4 3 2 30 30 H 0.97005 * 119.99613 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46869 * 23.64190 * 14 5 4 32 32 H 1.08999 * 109.46831 * 143.63821 * 14 5 4 33 33 H 1.08000 * 119.98844 * 0.02562 * 16 15 14 34 34 H 1.07994 * 119.98782 * 179.77237 * 19 17 16 35 35 H 1.08006 * 120.01468 * 179.97438 * 20 19 17 36 36 H 0.96703 * 114.00043 * 89.99853 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9731 0.5313 -1.2368 6 6 4.1278 1.2663 -2.3818 7 1 4.5959 0.8234 -3.2486 8 6 3.6829 2.5803 -2.4285 9 7 3.1605 3.1367 -1.3562 10 14 3.8259 3.5590 -4.0132 11 1 4.4432 2.7113 -5.0646 12 1 2.4740 3.9876 -4.4539 13 1 4.6734 4.7561 -3.7811 14 6 4.2453 -0.9082 -1.2480 15 6 5.7222 -1.1417 -1.0609 16 6 6.5165 -1.4493 -2.1488 17 6 7.8741 -1.6596 -1.9780 18 9 8.6506 -1.9554 -3.0433 19 6 8.4363 -1.5714 -0.7155 20 6 7.6436 -1.2690 0.3745 21 6 6.2839 -1.0534 0.2040 22 8 5.5023 -0.7566 1.2762 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8533 0.5905 0.8563 29 1 3.9788 2.1783 0.0617 30 1 2.8499 4.0551 -1.3888 31 1 3.6961 -1.3881 -0.4379 32 1 3.9286 -1.3304 -2.2017 33 1 6.0788 -1.5221 -3.1334 34 1 9.4949 -1.7393 -0.5831 35 1 8.0822 -1.2007 1.3591 36 1 5.1243 -1.5317 1.7139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835067536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:31 Heat of formation + Delta-G solvation = -70.637651 kcal Electronic energy + Delta-G solvation = -21241.115403 eV Core-core repulsion = 17834.743767 eV Total energy + Delta-G solvation = -3406.371636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.55670 -39.39117 -36.96899 -36.03561 -35.25526 -32.18974 -30.32565 -29.03072 -28.27506 -25.67054 -25.47828 -22.95087 -22.39205 -21.25794 -20.04049 -18.00171 -17.08283 -16.53899 -16.17498 -15.52979 -15.23422 -15.00034 -14.84005 -14.43688 -13.98637 -13.76549 -13.54030 -13.30691 -13.09764 -12.77986 -12.53003 -11.69259 -11.56320 -11.24803 -11.13424 -10.95587 -10.80688 -10.66795 -10.48140 -10.06131 -9.94580 -9.74750 -9.46919 -8.81909 -8.60421 -8.19261 -8.02002 -6.77753 -5.62618 -3.12275 1.46005 1.58513 3.37958 3.45354 3.46591 3.84297 4.50460 4.56041 4.61702 4.98431 5.10461 5.17888 5.40369 5.56732 5.70073 5.77469 5.95146 6.04301 6.13630 6.19867 6.20152 6.31711 6.42950 6.59714 6.71226 6.76115 6.99897 7.03278 7.16178 7.20437 7.59845 7.88496 7.90946 8.07729 8.35683 8.51120 9.29745 9.88206 10.32050 11.29298 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.007670 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.793890 B = 3649.917010 C = 4840.986461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.403 6.403 3 C 0.059 3.941 4 C 0.176 3.824 5 N -0.579 5.579 6 C -0.226 4.226 7 H 0.073 0.927 8 C -0.015 4.015 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.192 3.808 15 C -0.076 4.076 16 C -0.130 4.130 17 C 0.081 3.919 18 F -0.148 7.148 19 C -0.157 4.157 20 C -0.124 4.124 21 C 0.106 3.894 22 O -0.481 6.481 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.008 0.992 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.249 0.751 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -9.264 4.257 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.323 6.323 3 C -0.018 4.018 4 C 0.051 3.949 5 N -0.298 5.298 6 C -0.355 4.355 7 H 0.091 0.909 8 C -0.209 4.209 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.064 3.936 15 C -0.081 4.081 16 C -0.150 4.150 17 C 0.062 3.938 18 F -0.127 7.127 19 C -0.176 4.176 20 C -0.143 4.143 21 C 0.061 3.939 22 O -0.290 6.290 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.026 0.974 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.314 -8.653 4.060 10.117 hybrid contribution -0.105 0.485 -0.898 1.026 sum 3.209 -8.169 3.162 9.329 Atomic orbital electron populations 1.22452 0.84329 1.00366 0.98653 1.87833 1.16934 1.32233 1.95268 1.24093 0.97107 0.80898 0.99738 1.21226 0.89662 0.99016 0.85021 1.44017 1.76060 1.01508 1.08188 1.19470 1.30835 0.94252 0.90942 0.90901 1.24766 1.00863 0.97573 0.97659 1.70141 1.47226 1.13186 1.26202 0.86044 0.77128 0.79958 0.82675 1.20615 1.21856 1.21892 1.19656 0.86674 0.87079 1.00183 1.21567 1.01294 0.93759 0.91457 1.20962 0.91363 1.02436 1.00233 1.17731 0.89115 1.03397 0.83549 1.91450 1.74864 1.91155 1.55197 1.20779 1.00381 1.05306 0.91164 1.21167 0.93456 1.00767 0.98874 1.18289 0.89166 0.99339 0.87138 1.84988 1.66333 1.34740 1.42933 0.91639 0.95838 0.95268 0.97364 0.89637 0.95194 0.87177 0.94025 0.91835 0.93227 0.84930 0.85344 0.85272 0.76523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.40 -8.77 10.47 -35.23 -0.37 -9.14 16 3 C 0.06 1.38 5.43 37.15 0.20 1.59 16 4 C 0.18 4.26 5.30 -4.04 -0.02 4.24 16 5 N -0.58 -14.08 2.47 -174.61 -0.43 -14.51 16 6 C -0.23 -5.99 9.76 -15.06 -0.15 -6.14 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.39 5.21 -17.43 -0.09 -0.48 16 9 N -0.92 -25.03 7.25 55.49 0.40 -24.63 16 10 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.19 3.91 5.39 -5.19 -0.03 3.88 16 15 C -0.08 -1.41 5.43 -104.48 -0.57 -1.98 16 16 C -0.13 -2.29 9.64 -39.53 -0.38 -2.68 16 17 C 0.08 1.34 7.30 -39.42 -0.29 1.05 16 18 F -0.15 -2.43 17.27 2.25 0.04 -2.39 16 19 C -0.16 -2.31 10.02 -39.53 -0.40 -2.70 16 20 C -0.12 -1.83 9.98 -39.44 -0.39 -2.22 16 21 C 0.11 1.79 6.68 -39.24 -0.26 1.53 16 22 O -0.48 -7.72 10.50 -19.59 -0.21 -7.93 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 2.28 5.96 -51.93 -0.31 1.97 16 28 H 0.03 0.69 5.68 -51.93 -0.29 0.39 16 29 H 0.11 3.02 5.90 -51.93 -0.31 2.71 16 30 H 0.25 6.66 8.31 -40.82 -0.34 6.33 16 31 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 32 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.13 2.25 8.02 -52.49 -0.42 1.83 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.38 4.18 9.06 45.56 0.41 4.60 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -29.44 305.03 -6.06 -35.51 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.81 Total: 3.83 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.26 Total: -2.11 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.03 Total: -39.14 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.57 Total: -17.07 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.44 -6.06 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.133 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds