Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00594 * 2 1 4 4 C 1.52992 * 109.47366 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47387 * 63.48021 * 4 3 2 6 6 C 1.36934 * 120.00085 * 83.23698 * 5 4 3 7 7 H 1.08004 * 119.99770 * 170.37329 * 6 5 4 8 8 C 1.38812 * 120.00043 * 350.36817 * 6 5 4 9 9 N 1.31617 * 119.99763 * 2.68546 * 8 6 5 10 10 Si 1.86801 * 119.99961 * 182.67654 * 8 6 5 11 11 H 1.48499 * 109.47102 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46677 * 120.00104 * 10 8 6 13 13 H 1.48495 * 109.47694 * 240.00247 * 10 8 6 14 14 C 1.46505 * 119.99861 * 263.23730 * 5 4 3 15 15 C 1.50694 * 109.47278 * 263.64117 * 14 5 4 16 16 C 1.38171 * 120.01315 * 258.35229 * 15 14 5 17 17 C 1.38434 * 120.02995 * 179.79162 * 16 15 14 18 18 F 1.35102 * 119.97461 * 180.25180 * 17 16 15 19 19 C 1.38480 * 120.06191 * 0.45998 * 17 16 15 20 20 C 1.38131 * 120.02587 * 359.78866 * 19 17 16 21 21 C 1.38686 * 120.01920 * 78.62212 * 15 14 5 22 22 O 1.35952 * 120.02475 * 0.02562 * 21 15 14 23 23 H 1.08992 * 109.47547 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46895 * 300.00143 * 1 2 3 25 25 H 1.09001 * 109.46999 * 59.99899 * 1 2 3 26 26 H 1.08996 * 109.46725 * 59.99959 * 3 2 1 27 27 H 1.08999 * 109.46662 * 300.00184 * 3 2 1 28 28 H 1.09000 * 109.47450 * 303.47958 * 4 3 2 29 29 H 1.09001 * 109.47227 * 183.47959 * 4 3 2 30 30 H 0.97005 * 119.99613 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46869 * 23.64190 * 14 5 4 32 32 H 1.08999 * 109.46831 * 143.63821 * 14 5 4 33 33 H 1.08000 * 119.98844 * 0.02562 * 16 15 14 34 34 H 1.07994 * 119.98782 * 179.77237 * 19 17 16 35 35 H 1.08006 * 120.01468 * 179.97438 * 20 19 17 36 36 H 0.96703 * 114.00043 * 89.99853 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9731 0.5313 -1.2368 6 6 4.1278 1.2663 -2.3818 7 1 4.5959 0.8234 -3.2486 8 6 3.6829 2.5803 -2.4285 9 7 3.1605 3.1367 -1.3562 10 14 3.8259 3.5590 -4.0132 11 1 4.4432 2.7113 -5.0646 12 1 2.4740 3.9876 -4.4539 13 1 4.6734 4.7561 -3.7811 14 6 4.2453 -0.9082 -1.2480 15 6 5.7222 -1.1417 -1.0609 16 6 6.5165 -1.4493 -2.1488 17 6 7.8741 -1.6596 -1.9780 18 9 8.6506 -1.9554 -3.0433 19 6 8.4363 -1.5714 -0.7155 20 6 7.6436 -1.2690 0.3745 21 6 6.2839 -1.0534 0.2040 22 8 5.5023 -0.7566 1.2762 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8533 0.5905 0.8563 29 1 3.9788 2.1783 0.0617 30 1 2.8499 4.0551 -1.3888 31 1 3.6961 -1.3881 -0.4379 32 1 3.9286 -1.3304 -2.2017 33 1 6.0788 -1.5221 -3.1334 34 1 9.4949 -1.7393 -0.5831 35 1 8.0822 -1.2007 1.3591 36 1 5.1243 -1.5317 1.7139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = -89.259552 kcal Electronic energy + Delta-G solvation = -21241.922909 eV Core-core repulsion = 17834.743767 eV Total energy + Delta-G solvation = -3407.179142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.82961 -40.69724 -38.70238 -37.29797 -36.99092 -33.86293 -31.99174 -30.49008 -29.88906 -27.34987 -27.01777 -24.71697 -23.68635 -22.79919 -21.77057 -19.27260 -18.76859 -17.98606 -17.55895 -17.23605 -16.72158 -16.52664 -16.24386 -16.16442 -15.58047 -15.31941 -15.02380 -14.85137 -14.58384 -14.26253 -13.88077 -13.32578 -13.10257 -12.85014 -12.69951 -12.61556 -12.46888 -12.40216 -12.23277 -11.84722 -11.67986 -11.48387 -11.14709 -10.69171 -10.03990 -9.88853 -9.31213 -8.68455 -7.63980 -5.13847 0.19434 0.31872 1.46049 1.48648 1.56372 2.49125 2.63515 3.29171 3.35160 3.39995 3.42389 3.85733 3.92136 3.97009 4.27046 4.47569 4.58128 4.64819 4.71924 4.84910 4.87783 4.94094 5.00477 5.07781 5.17992 5.20239 5.26135 5.38070 5.58030 5.64299 5.88857 5.94296 5.97187 6.42202 6.72470 7.00859 7.28710 7.97435 8.36630 9.25548 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.007670 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.793890 B = 3649.917010 C = 4840.986461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.416 6.416 3 C 0.075 3.925 4 C 0.185 3.815 5 N -0.592 5.592 6 C -0.233 4.233 7 H 0.069 0.931 8 C -0.061 4.061 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.276 1.276 12 H -0.295 1.295 13 H -0.297 1.297 14 C 0.197 3.803 15 C -0.099 4.099 16 C -0.141 4.141 17 C 0.068 3.932 18 F -0.149 7.149 19 C -0.142 4.142 20 C -0.118 4.118 21 C 0.104 3.896 22 O -0.495 6.495 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.012 0.988 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.242 0.758 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -10.382 5.125 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.335 6.335 3 C -0.003 4.003 4 C 0.059 3.941 5 N -0.312 5.312 6 C -0.363 4.363 7 H 0.087 0.913 8 C -0.253 4.253 9 N -0.582 5.582 10 Si 0.794 3.206 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.224 1.224 14 C 0.070 3.930 15 C -0.103 4.103 16 C -0.161 4.161 17 C 0.049 3.951 18 F -0.128 7.128 19 C -0.161 4.161 20 C -0.136 4.136 21 C 0.059 3.941 22 O -0.307 6.307 23 H 0.115 0.885 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.251 -9.824 4.936 11.788 hybrid contribution -0.405 0.713 -1.110 1.380 sum 3.846 -9.111 3.826 10.604 Atomic orbital electron populations 1.22692 0.81931 1.02603 0.99065 1.87778 1.19511 1.30914 1.95328 1.23662 0.96902 0.81468 0.98272 1.20946 0.89999 0.97477 0.85643 1.44097 1.76735 1.02856 1.07468 1.19634 1.30336 0.94610 0.91706 0.91320 1.25361 1.01503 0.98539 0.99894 1.70335 1.47878 1.12830 1.27118 0.85225 0.76564 0.78537 0.80297 1.20056 1.22186 1.22408 1.19623 0.88332 0.84962 1.00060 1.21295 0.99881 0.96370 0.92752 1.20985 0.92249 1.02944 0.99935 1.17851 0.88729 1.04129 0.84397 1.91445 1.74691 1.91233 1.55445 1.21163 1.01964 1.02978 0.90012 1.21467 0.92362 0.99410 1.00390 1.18447 0.90250 0.98770 0.86681 1.84906 1.66560 1.36564 1.42682 0.88512 0.94223 0.96008 0.96978 0.92888 0.93841 0.90548 0.94728 0.91183 0.93866 0.85467 0.82084 0.82095 0.73978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.01 113.37 1.25 2.38 16 2 O -0.42 -17.75 10.47 -148.98 -1.56 -19.31 16 3 C 0.07 3.54 5.43 71.98 0.39 3.93 16 4 C 0.18 9.04 5.30 86.38 0.46 9.49 16 5 N -0.59 -29.03 2.47 -706.34 -1.74 -30.78 16 6 C -0.23 -12.55 9.76 84.03 0.82 -11.73 16 7 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 8 C -0.06 -3.32 5.21 84.86 0.44 -2.88 16 9 N -0.93 -51.97 7.25 21.65 0.16 -51.82 16 10 Si 0.96 45.51 29.55 68.60 2.03 47.53 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 14 C 0.20 8.01 5.39 85.63 0.46 8.47 16 15 C -0.10 -3.60 5.43 -19.78 -0.11 -3.70 16 16 C -0.14 -4.92 9.64 22.30 0.22 -4.71 16 17 C 0.07 2.13 7.30 22.37 0.16 2.29 16 18 F -0.15 -4.68 17.27 44.97 0.78 -3.90 16 19 C -0.14 -3.71 10.02 22.30 0.22 -3.48 16 20 C -0.12 -3.09 9.98 22.36 0.22 -2.86 16 21 C 0.10 3.31 6.68 22.49 0.15 3.46 16 22 O -0.49 -14.91 10.50 -93.01 -0.98 -15.88 16 23 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 2.89 5.96 -2.39 -0.01 2.88 16 28 H 0.04 1.97 5.68 -2.39 -0.01 1.96 16 29 H 0.08 4.29 5.90 -2.39 -0.01 4.27 16 30 H 0.24 13.32 8.31 -92.70 -0.77 12.55 16 31 H 0.07 2.69 7.66 -2.38 -0.02 2.68 16 32 H 0.04 1.77 7.93 -2.39 -0.02 1.75 16 33 H 0.13 4.41 8.02 -2.91 -0.02 4.38 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.40 7.90 9.06 -74.05 -0.67 7.23 16 Total: -1.00 -63.23 305.03 3.80 -59.43 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.43 Total: 14.06 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.69 Total: 0.66 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.59 Total: -82.60 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -2.54 Total: -35.19 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -63.23 3.80 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.827 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds