Wall clock time and date at job start Mon Mar 30 2020 00:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.52996 * 109.47442 * 240.00100 * 2 1 3 5 5 C 1.50703 * 109.47341 * 174.99966 * 4 2 1 6 6 H 1.07998 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99919 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99956 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00070 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47030 * 89.99756 * 9 7 5 11 11 H 1.48501 * 109.46854 * 209.99419 * 9 7 5 12 12 H 1.48493 * 109.47311 * 329.99656 * 9 7 5 13 13 N 1.46901 * 109.46716 * 119.99908 * 2 1 3 14 14 C 1.46904 * 111.00194 * 276.86993 * 13 2 1 15 15 H 1.09001 * 109.46765 * 32.69244 * 14 13 2 16 16 C 1.52992 * 109.46973 * 152.69174 * 14 13 2 17 17 C 1.53009 * 109.47114 * 294.26111 * 16 14 13 18 18 O 1.42896 * 109.47028 * 185.15489 * 17 16 14 19 19 C 1.50702 * 109.47061 * 272.69360 * 14 13 2 20 20 C 1.33389 * 125.20268 * 139.99927 * 19 14 13 21 21 C 1.38422 * 114.91874 * 179.97438 * 20 19 14 22 22 C 1.33387 * 114.92474 * 0.02562 * 21 20 19 23 23 S 1.75886 * 125.20212 * 319.69038 * 19 14 13 24 24 H 1.08999 * 109.47293 * 175.76502 * 1 2 3 25 25 H 1.09003 * 109.46827 * 55.76959 * 1 2 3 26 26 H 1.08994 * 109.47047 * 295.77502 * 1 2 3 27 27 H 1.09004 * 109.46985 * 295.00290 * 4 2 1 28 28 H 1.09002 * 109.47080 * 54.99686 * 4 2 1 29 29 H 0.96996 * 120.00130 * 180.02562 * 8 7 5 30 30 H 1.00891 * 110.99987 * 40.82860 * 13 2 1 31 31 H 1.09001 * 109.47751 * 54.26065 * 16 14 13 32 32 H 1.09001 * 109.47155 * 174.26299 * 16 14 13 33 33 H 1.09003 * 109.46763 * 305.15336 * 17 16 14 34 34 H 1.08999 * 109.46876 * 65.15287 * 17 16 14 35 35 H 0.96698 * 114.00187 * 179.97438 * 18 17 16 36 36 H 1.08000 * 122.53912 * 359.97438 * 20 19 14 37 37 H 1.07996 * 122.53767 * 179.97438 * 21 20 19 38 38 H 1.07991 * 125.20773 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 5.5413 -1.1010 -2.4128 9 14 3.3016 -2.1086 -3.6953 10 1 2.9409 -1.1636 -4.7826 11 1 4.1601 -3.1893 -4.2433 12 1 2.0656 -2.7002 -3.1234 13 7 2.0196 -0.6925 1.1995 14 6 2.0404 0.2112 2.3575 15 1 1.2219 0.9263 2.2750 16 6 1.8788 -0.6030 3.6427 17 6 0.4878 -1.2399 3.6714 18 8 0.2921 -1.9003 4.9233 19 6 3.3526 0.9515 2.3935 20 6 3.5008 2.2388 2.7101 21 6 4.8049 2.7014 2.6755 22 6 5.7157 1.7901 2.3304 23 16 4.9237 0.2483 2.0319 24 1 -0.3634 -1.0248 -0.0759 25 1 -0.3633 0.5781 -0.8497 26 1 -0.3633 0.4468 0.9254 27 1 1.7517 -1.7715 -1.2056 28 1 1.6055 -0.2617 -2.1369 29 1 6.0257 -1.5078 -3.1482 30 1 1.4681 -1.5150 1.3925 31 1 2.6372 -1.3852 3.6752 32 1 1.9959 0.0527 4.5054 33 1 -0.2690 -0.4654 3.5469 34 1 0.4032 -1.9643 2.8613 35 1 -0.5709 -2.3275 5.0121 36 1 2.6665 2.8720 2.9734 37 1 5.0652 3.7231 2.9094 38 1 6.7775 1.9702 2.2507 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:35 Heat of formation + Delta-G solvation = -23.555891 kcal Electronic energy + Delta-G solvation = -18938.184989 eV Core-core repulsion = 16100.068147 eV Total energy + Delta-G solvation = -2838.116842 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.53187 -36.93861 -36.35201 -33.61633 -32.00665 -29.24187 -28.69240 -27.65896 -24.87683 -22.83102 -22.58889 -20.71698 -19.78696 -18.78584 -17.54182 -16.54316 -16.44619 -15.73629 -14.97709 -14.69720 -14.37399 -14.04018 -13.80049 -13.17825 -12.76105 -12.58944 -12.32274 -12.21151 -12.03819 -11.84141 -11.73037 -11.64671 -11.16002 -11.00929 -10.99152 -10.66724 -10.28834 -10.05839 -9.91501 -9.67974 -9.55756 -9.01135 -8.36229 -8.10390 -7.80843 -7.58949 -5.83370 -3.77020 1.60471 2.36388 2.79800 3.24065 3.38417 3.46603 3.48748 4.10338 4.59857 4.61067 4.93784 5.01524 5.27084 5.46639 5.48665 5.50862 5.56877 5.59225 5.60930 5.73405 5.83368 5.98038 5.99819 6.08123 6.22606 6.35537 6.44705 6.58566 6.79812 6.81663 6.98749 7.16361 7.32265 7.48693 7.74361 7.91567 8.04154 8.80420 9.33949 9.79766 11.29730 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.007653 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.657582 B = 3658.052828 C = 4906.687597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.098 3.902 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.493 4.493 6 H 0.093 0.907 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.659 5.659 14 C 0.161 3.839 15 H 0.056 0.944 16 C -0.119 4.119 17 C 0.074 3.926 18 O -0.573 6.573 19 C -0.164 4.164 20 C -0.160 4.160 21 C -0.145 4.145 22 C -0.247 4.247 23 S 0.215 5.785 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.258 0.742 30 H 0.335 0.665 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 2.890 12.230 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.011 4.011 3 H 0.091 0.909 4 C -0.042 4.042 5 C -0.531 4.531 6 H 0.111 0.889 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.697 3.303 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.291 5.291 14 C 0.049 3.951 15 H 0.074 0.926 16 C -0.158 4.158 17 C -0.004 4.004 18 O -0.378 6.378 19 C -0.284 4.284 20 C -0.191 4.191 21 C -0.177 4.177 22 C -0.384 4.384 23 S 0.482 5.518 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.870 1.691 11.634 13.617 hybrid contribution -2.400 0.903 -0.579 2.629 sum -9.270 2.594 11.055 14.659 Atomic orbital electron populations 1.22614 0.99522 1.01337 1.00813 1.21611 0.89555 0.98592 0.91352 0.90944 1.19606 0.98250 0.95165 0.91165 1.21278 0.89376 1.33603 1.08859 0.88885 1.24983 0.94624 0.96348 0.97697 1.69908 1.06282 1.46329 1.32171 0.86974 0.80260 0.80086 0.82974 1.20862 1.21789 1.19473 1.60520 1.59256 1.07497 1.01861 1.19766 0.91623 0.93479 0.90249 0.92620 1.21728 0.96230 1.00249 0.97563 1.22252 0.97291 0.95303 0.85506 1.86481 1.40302 1.73918 1.37124 1.24534 0.99060 0.97668 1.07130 1.19876 0.97462 0.94776 1.07009 1.19881 0.92363 1.00168 1.05274 1.25841 1.03475 0.99472 1.09605 1.84937 0.95829 1.08755 1.62268 0.93025 0.92385 0.94065 0.96743 0.97102 0.93261 0.84482 0.89968 0.90501 0.93901 0.93282 0.77636 0.85689 0.85639 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.16 37.16 0.34 -2.38 16 2 C 0.10 1.84 2.35 -67.71 -0.16 1.68 16 3 H 0.07 1.48 7.74 -51.93 -0.40 1.07 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 5 C -0.49 -13.61 9.39 -34.44 -0.32 -13.94 16 6 H 0.09 2.69 6.73 -52.49 -0.35 2.33 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -27.89 13.96 55.43 0.77 -27.11 16 9 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 N -0.66 -11.42 5.54 -100.95 -0.56 -11.98 16 14 C 0.16 2.42 2.25 -68.87 -0.15 2.27 16 15 H 0.06 0.79 6.95 -51.93 -0.36 0.43 16 16 C -0.12 -1.59 5.13 -26.73 -0.14 -1.72 16 17 C 0.07 0.83 6.80 37.16 0.25 1.08 16 18 O -0.57 -6.41 13.66 -35.23 -0.48 -6.90 16 19 C -0.16 -2.79 5.22 -36.00 -0.19 -2.98 16 20 C -0.16 -2.52 10.04 -41.21 -0.41 -2.93 16 21 C -0.15 -2.28 10.18 -41.21 -0.42 -2.69 16 22 C -0.25 -4.15 11.23 29.04 0.33 -3.82 16 23 S 0.22 4.05 21.87 -107.50 -2.35 1.70 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.53 7.27 -51.93 -0.38 0.15 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 30 H 0.34 5.26 6.36 -39.30 -0.25 5.01 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.53 6.64 -51.93 -0.34 0.19 16 35 H 0.38 2.41 9.12 45.56 0.42 2.82 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -31.99 322.95 -8.49 -40.48 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.99 Total: 5.65 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.08 Total: -23.92 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.21 Total: -39.09 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.48 Total: -6.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.35 Total: 1.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.99 -8.49 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.920 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds