Wall clock time and date at job start Mon Mar 30 2020 00:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.52996 * 109.47442 * 240.00100 * 2 1 3 5 5 C 1.50703 * 109.47341 * 174.99966 * 4 2 1 6 6 H 1.07998 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99919 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99956 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00070 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47030 * 89.99756 * 9 7 5 11 11 H 1.48501 * 109.46854 * 209.99419 * 9 7 5 12 12 H 1.48493 * 109.47311 * 329.99656 * 9 7 5 13 13 N 1.46901 * 109.46716 * 119.99908 * 2 1 3 14 14 C 1.46904 * 111.00194 * 276.86993 * 13 2 1 15 15 H 1.09001 * 109.46765 * 32.69244 * 14 13 2 16 16 C 1.52992 * 109.46973 * 152.69174 * 14 13 2 17 17 C 1.53009 * 109.47114 * 294.26111 * 16 14 13 18 18 O 1.42896 * 109.47028 * 185.15489 * 17 16 14 19 19 C 1.50702 * 109.47061 * 272.69360 * 14 13 2 20 20 C 1.33389 * 125.20268 * 139.99927 * 19 14 13 21 21 C 1.38422 * 114.91874 * 179.97438 * 20 19 14 22 22 C 1.33387 * 114.92474 * 0.02562 * 21 20 19 23 23 S 1.75886 * 125.20212 * 319.69038 * 19 14 13 24 24 H 1.08999 * 109.47293 * 175.76502 * 1 2 3 25 25 H 1.09003 * 109.46827 * 55.76959 * 1 2 3 26 26 H 1.08994 * 109.47047 * 295.77502 * 1 2 3 27 27 H 1.09004 * 109.46985 * 295.00290 * 4 2 1 28 28 H 1.09002 * 109.47080 * 54.99686 * 4 2 1 29 29 H 0.96996 * 120.00130 * 180.02562 * 8 7 5 30 30 H 1.00891 * 110.99987 * 40.82860 * 13 2 1 31 31 H 1.09001 * 109.47751 * 54.26065 * 16 14 13 32 32 H 1.09001 * 109.47155 * 174.26299 * 16 14 13 33 33 H 1.09003 * 109.46763 * 305.15336 * 17 16 14 34 34 H 1.08999 * 109.46876 * 65.15287 * 17 16 14 35 35 H 0.96698 * 114.00187 * 179.97438 * 18 17 16 36 36 H 1.08000 * 122.53912 * 359.97438 * 20 19 14 37 37 H 1.07996 * 122.53767 * 179.97438 * 21 20 19 38 38 H 1.07991 * 125.20773 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 5.5413 -1.1010 -2.4128 9 14 3.3016 -2.1086 -3.6953 10 1 2.9409 -1.1636 -4.7826 11 1 4.1601 -3.1893 -4.2433 12 1 2.0656 -2.7002 -3.1234 13 7 2.0196 -0.6925 1.1995 14 6 2.0404 0.2112 2.3575 15 1 1.2219 0.9263 2.2750 16 6 1.8788 -0.6030 3.6427 17 6 0.4878 -1.2399 3.6714 18 8 0.2921 -1.9003 4.9233 19 6 3.3526 0.9515 2.3935 20 6 3.5008 2.2388 2.7101 21 6 4.8049 2.7014 2.6755 22 6 5.7157 1.7901 2.3304 23 16 4.9237 0.2483 2.0319 24 1 -0.3634 -1.0248 -0.0759 25 1 -0.3633 0.5781 -0.8497 26 1 -0.3633 0.4468 0.9254 27 1 1.7517 -1.7715 -1.2056 28 1 1.6055 -0.2617 -2.1369 29 1 6.0257 -1.5078 -3.1482 30 1 1.4681 -1.5150 1.3925 31 1 2.6372 -1.3852 3.6752 32 1 1.9959 0.0527 4.5054 33 1 -0.2690 -0.4654 3.5469 34 1 0.4032 -1.9643 2.8613 35 1 -0.5709 -2.3275 5.0121 36 1 2.6665 2.8720 2.9734 37 1 5.0652 3.7231 2.9094 38 1 6.7775 1.9702 2.2507 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:35 Heat of formation + Delta-G solvation = -46.708368 kcal Electronic energy + Delta-G solvation = -18939.188956 eV Core-core repulsion = 16100.068147 eV Total energy + Delta-G solvation = -2839.120809 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75181 -38.04250 -37.52102 -35.15980 -33.86756 -30.41796 -30.28259 -29.12249 -26.04494 -24.56769 -23.84416 -21.87590 -21.36094 -20.03657 -18.63034 -18.45637 -17.75887 -16.85850 -16.38756 -16.18811 -15.65298 -15.38471 -15.04506 -14.79900 -14.13931 -14.04001 -13.77505 -13.52018 -13.40075 -13.29686 -13.16230 -12.85638 -12.60673 -12.40653 -12.22669 -12.00523 -11.96472 -11.55023 -11.38866 -11.24860 -11.01278 -10.84008 -10.57068 -9.39889 -9.14740 -9.00998 -8.03607 -6.00939 0.30300 1.01745 1.38548 1.41063 1.47919 1.50387 1.99225 2.49590 3.19086 3.29494 3.44221 3.85751 4.06007 4.26862 4.32750 4.36332 4.37075 4.42240 4.54236 4.58716 4.64238 4.80176 4.82402 4.95248 5.05506 5.16307 5.20219 5.27721 5.28671 5.37873 5.52553 5.59669 5.77347 5.87301 6.34798 6.63599 6.75379 6.91503 7.15506 7.58887 9.11647 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.007653 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.657582 B = 3658.052828 C = 4906.687597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H 0.052 0.948 4 C -0.005 4.005 5 C -0.491 4.491 6 H 0.072 0.928 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.251 1.251 13 N -0.678 5.678 14 C 0.168 3.832 15 H 0.076 0.924 16 C -0.112 4.112 17 C 0.080 3.920 18 O -0.591 6.591 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.140 4.140 22 C -0.254 4.254 23 S 0.120 5.880 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.255 0.745 30 H 0.344 0.656 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.398 0.602 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 3.668 12.944 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 H 0.070 0.930 4 C -0.043 4.043 5 C -0.529 4.529 6 H 0.090 0.910 7 C -0.196 4.196 8 N -0.599 5.599 9 Si 0.758 3.242 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.175 1.175 13 N -0.312 5.312 14 C 0.056 3.944 15 H 0.094 0.906 16 C -0.151 4.151 17 C 0.002 3.998 18 O -0.400 6.400 19 C -0.283 4.283 20 C -0.192 4.192 21 C -0.171 4.171 22 C -0.390 4.390 23 S 0.386 5.614 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.166 0.834 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.248 0.752 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.999 2.465 12.368 16.094 hybrid contribution -1.405 0.749 -0.693 1.736 sum -11.404 3.215 11.675 16.634 Atomic orbital electron populations 1.22465 0.95841 1.02425 1.02443 1.21323 0.92329 0.96638 0.90022 0.92987 1.19593 0.95204 0.95736 0.93766 1.21734 0.91972 1.31660 1.07567 0.91042 1.25817 0.95334 0.97917 1.00504 1.70082 1.08144 1.48399 1.33243 0.85951 0.79438 0.78715 0.80133 1.20281 1.22315 1.17463 1.60315 1.60094 1.08411 1.02350 1.19790 0.91027 0.93535 0.90028 0.90649 1.21610 0.97340 0.99536 0.96596 1.22154 0.96108 0.95877 0.85668 1.86425 1.42281 1.74265 1.37033 1.24820 0.98291 0.98131 1.07087 1.20285 0.98479 0.94561 1.05862 1.20309 0.92077 1.01260 1.03470 1.25997 1.04439 0.98140 1.10429 1.85222 0.99355 1.12050 1.64812 0.92016 0.92044 0.91370 0.96761 0.96945 0.93634 0.83443 0.92191 0.90265 0.91855 0.92949 0.75177 0.82646 0.82490 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 9.16 71.98 0.66 -3.81 16 2 C 0.11 3.80 2.35 44.92 0.11 3.91 16 3 H 0.05 2.06 7.74 -2.38 -0.02 2.04 16 4 C -0.01 -0.24 3.72 29.85 0.11 -0.12 16 5 C -0.49 -27.53 9.39 25.60 0.24 -27.29 16 6 H 0.07 4.28 6.73 -2.91 -0.02 4.26 16 7 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 8 N -0.96 -60.88 13.96 21.45 0.30 -60.58 16 9 Si 0.93 45.38 27.47 68.60 1.88 47.27 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 13 N -0.68 -22.68 5.54 -473.30 -2.62 -25.30 16 14 C 0.17 4.75 2.25 44.17 0.10 4.85 16 15 H 0.08 1.87 6.95 -2.39 -0.02 1.85 16 16 C -0.11 -2.81 5.13 30.59 0.16 -2.65 16 17 C 0.08 1.55 6.80 71.99 0.49 2.04 16 18 O -0.59 -11.72 13.66 -148.98 -2.03 -13.75 16 19 C -0.16 -5.46 5.22 24.59 0.13 -5.34 16 20 C -0.16 -4.75 10.04 21.22 0.21 -4.54 16 21 C -0.14 -4.16 10.18 21.22 0.22 -3.94 16 22 C -0.25 -8.59 11.23 66.72 0.75 -7.84 16 23 S 0.12 4.71 21.87 -56.49 -1.24 3.48 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.41 7.27 -2.39 -0.02 1.40 16 27 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 28 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 29 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.34 10.20 6.36 -89.70 -0.57 9.63 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.98 6.64 -2.39 -0.02 0.97 16 35 H 0.40 3.91 9.12 -74.06 -0.68 3.24 16 36 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 37 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.17 4.99 8.06 -2.92 -0.02 4.96 16 Total: -1.00 -70.85 322.95 -0.32 -71.17 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.24 Total: 22.09 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 3.63 Total: -44.36 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.32 Total: -85.88 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -2.03 Total: -13.75 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.24 Total: 3.48 kcal Total: -70.85 -0.32 -71.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds