Wall clock time and date at job start Mon Mar 30 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 H 1.07997 * 120.00519 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00656 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99647 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46901 * 90.00607 * 9 7 5 11 11 H 1.48505 * 109.47182 * 210.00134 * 9 7 5 12 12 H 1.48499 * 109.47191 * 330.00558 * 9 7 5 13 13 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 14 14 C 1.46903 * 110.99807 * 84.99961 * 13 2 1 15 15 H 1.08997 * 109.47215 * 324.99479 * 14 13 2 16 16 C 1.53002 * 109.46765 * 204.99932 * 14 13 2 17 17 C 1.52991 * 109.47237 * 65.00306 * 16 14 13 18 18 O 1.42906 * 109.47253 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.47422 * 85.00063 * 14 13 2 20 20 C 1.33380 * 125.20219 * 219.72261 * 19 14 13 21 21 C 1.38430 * 114.92080 * 179.85748 * 20 19 14 22 22 C 1.33392 * 114.91568 * 0.42407 * 21 20 19 23 23 S 1.75878 * 109.59506 * 359.77498 * 22 21 20 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 29 29 H 0.96997 * 120.00329 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99898 * 208.95281 * 13 2 1 31 31 H 1.09009 * 109.47057 * 185.00024 * 16 14 13 32 32 H 1.09002 * 109.47270 * 304.99640 * 16 14 13 33 33 H 1.09001 * 109.47044 * 299.99545 * 17 16 14 34 34 H 1.09002 * 109.47565 * 60.00053 * 17 16 14 35 35 H 0.96698 * 114.00095 * 179.97438 * 18 17 16 36 36 H 1.07999 * 122.54425 * 0.02562 * 20 19 14 37 37 H 1.08000 * 122.53935 * 180.19725 * 21 20 19 38 38 H 1.07998 * 125.19639 * 179.79357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 5.5412 -1.1011 2.4130 9 14 3.3016 -2.1087 3.6953 10 1 3.1701 -3.5387 3.3168 11 1 4.0454 -2.0021 4.9762 12 1 1.9508 -1.5130 3.8561 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2228 -2.3469 15 1 1.2576 0.9330 -2.2907 16 6 1.9771 -0.5795 -3.6454 17 6 0.5985 -1.2377 -3.7277 18 8 0.4998 -1.9866 -4.9408 19 6 3.3912 0.9697 -2.3227 20 6 3.5461 2.2594 -2.6256 21 6 4.8446 2.7293 -2.5293 22 6 5.7455 1.8189 -2.1568 23 16 4.9489 0.2723 -1.8980 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 6.0256 -1.5078 3.1483 30 1 2.9174 -1.1204 -1.0288 31 1 2.1125 0.0877 -4.4967 32 1 2.7488 -1.3492 -3.6607 33 1 0.4630 -1.9049 -2.8765 34 1 -0.1732 -0.4681 -3.7125 35 1 -0.3500 -2.4325 -5.0598 36 1 2.7206 2.8901 -2.9208 37 1 5.1088 3.7544 -2.7433 38 1 6.8024 2.0034 -2.0329 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839552259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:39 Heat of formation + Delta-G solvation = -30.450136 kcal Electronic energy + Delta-G solvation = -18982.257902 eV Core-core repulsion = 16143.842103 eV Total energy + Delta-G solvation = -2838.415799 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.42905 -36.83851 -36.29016 -33.58848 -32.08409 -29.31044 -28.53313 -27.87434 -24.72528 -22.86580 -22.54434 -20.64524 -19.64730 -18.81901 -17.38587 -16.84200 -16.57260 -15.58183 -15.10549 -14.53744 -14.43738 -13.95734 -13.66307 -13.14058 -12.80236 -12.48704 -12.32930 -12.25186 -11.95984 -11.84155 -11.70489 -11.59929 -11.12713 -11.03797 -10.82984 -10.76088 -10.35280 -10.08684 -9.81960 -9.77358 -9.47345 -9.23791 -8.53100 -8.26768 -7.92949 -7.76501 -6.02626 -4.01342 1.44146 2.11907 2.51542 3.12383 3.31341 3.39158 3.42668 4.31717 4.46463 4.72937 5.10288 5.28167 5.34615 5.43568 5.53883 5.60529 5.64556 5.79105 5.85437 5.91838 5.94462 6.03350 6.10007 6.31183 6.35626 6.39186 6.48605 6.65450 6.69287 6.74109 6.84801 7.16884 7.26548 7.72384 7.76406 7.80247 8.07718 8.53812 9.04135 9.59812 11.09023 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.007737 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.299165 B = 3618.335020 C = 4828.268604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.039 0.961 4 C -0.018 4.018 5 C -0.531 4.531 6 H 0.088 0.912 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.674 5.674 14 C 0.159 3.841 15 H 0.087 0.913 16 C -0.101 4.101 17 C 0.083 3.917 18 O -0.581 6.581 19 C -0.208 4.208 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.227 4.227 23 S 0.170 5.830 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.359 0.641 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.375 0.625 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 3.504 -11.183 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 H 0.058 0.942 4 C -0.056 4.056 5 C -0.569 4.569 6 H 0.106 0.894 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.308 5.308 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.139 4.139 17 C 0.005 3.995 18 O -0.386 6.386 19 C -0.328 4.328 20 C -0.178 4.178 21 C -0.175 4.175 22 C -0.364 4.364 23 S 0.436 5.564 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.182 0.818 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.221 0.779 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.352 1.963 -10.843 12.719 hybrid contribution -0.472 1.439 0.888 1.756 sum -6.824 3.402 -9.955 12.540 Atomic orbital electron populations 1.21851 0.96576 1.01333 0.99846 1.21440 0.93101 0.96500 0.90520 0.94243 1.19783 0.97476 0.95781 0.92526 1.21370 0.89773 1.35391 1.10371 0.89407 1.24966 0.94614 0.95690 0.97633 1.69908 1.06437 1.45173 1.32143 0.86864 0.80497 0.80649 0.81745 1.20373 1.21642 1.19181 1.60841 1.34973 1.30667 1.04329 1.20089 0.90796 0.92486 0.91995 0.89480 1.21470 0.97018 0.99354 0.96074 1.22125 0.96753 0.94388 0.86220 1.86445 1.40503 1.69328 1.42373 1.25611 1.00237 0.98951 1.08014 1.19951 0.97557 0.94763 1.05553 1.20000 0.92566 1.00286 1.04664 1.25689 1.03571 0.97871 1.09250 1.84824 0.97580 1.10492 1.63489 0.92630 0.93191 0.94154 0.96122 0.96225 0.92878 0.81841 0.91459 0.91038 0.91710 0.94488 0.77935 0.85235 0.85195 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.40 37.16 0.35 -1.86 16 2 C 0.09 1.81 2.40 -67.71 -0.16 1.65 16 3 H 0.04 0.82 7.64 -51.93 -0.40 0.42 16 4 C -0.02 -0.42 3.64 -27.89 -0.10 -0.52 16 5 C -0.53 -14.24 8.67 -34.44 -0.30 -14.54 16 6 H 0.09 2.41 5.94 -52.49 -0.31 2.09 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 9 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 N -0.67 -12.21 5.51 -100.95 -0.56 -12.76 16 14 C 0.16 2.49 2.24 -68.86 -0.15 2.34 16 15 H 0.09 1.29 7.09 -51.93 -0.37 0.92 16 16 C -0.10 -1.45 5.24 -26.73 -0.14 -1.59 16 17 C 0.08 1.07 6.93 37.15 0.26 1.33 16 18 O -0.58 -7.37 13.66 -35.23 -0.48 -7.85 16 19 C -0.21 -3.50 5.11 -36.00 -0.18 -3.68 16 20 C -0.15 -2.28 10.04 -41.21 -0.41 -2.69 16 21 C -0.14 -2.19 10.18 -41.20 -0.42 -2.61 16 22 C -0.23 -3.71 11.23 29.04 0.33 -3.38 16 23 S 0.17 3.12 20.35 -107.50 -2.19 0.93 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.56 7.43 -51.93 -0.39 0.18 16 27 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 28 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.36 7.38 5.79 -39.29 -0.23 7.15 16 31 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.37 2.95 9.12 45.56 0.42 3.36 16 36 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -30.17 320.96 -8.31 -38.48 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.99 Total: 9.09 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -1.04 Total: -23.60 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.22 Total: -38.66 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.48 Total: -7.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.19 Total: 0.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.17 -8.31 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.030 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds