Wall clock time and date at job start Mon Mar 30 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 H 1.07997 * 120.00519 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00656 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99647 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46901 * 90.00607 * 9 7 5 11 11 H 1.48505 * 109.47182 * 210.00134 * 9 7 5 12 12 H 1.48499 * 109.47191 * 330.00558 * 9 7 5 13 13 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 14 14 C 1.46903 * 110.99807 * 84.99961 * 13 2 1 15 15 H 1.08997 * 109.47215 * 324.99479 * 14 13 2 16 16 C 1.53002 * 109.46765 * 204.99932 * 14 13 2 17 17 C 1.52991 * 109.47237 * 65.00306 * 16 14 13 18 18 O 1.42906 * 109.47253 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.47422 * 85.00063 * 14 13 2 20 20 C 1.33380 * 125.20219 * 219.72261 * 19 14 13 21 21 C 1.38430 * 114.92080 * 179.85748 * 20 19 14 22 22 C 1.33392 * 114.91568 * 0.42407 * 21 20 19 23 23 S 1.75878 * 109.59506 * 359.77498 * 22 21 20 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 28 28 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 29 29 H 0.96997 * 120.00329 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99898 * 208.95281 * 13 2 1 31 31 H 1.09009 * 109.47057 * 185.00024 * 16 14 13 32 32 H 1.09002 * 109.47270 * 304.99640 * 16 14 13 33 33 H 1.09001 * 109.47044 * 299.99545 * 17 16 14 34 34 H 1.09002 * 109.47565 * 60.00053 * 17 16 14 35 35 H 0.96698 * 114.00095 * 179.97438 * 18 17 16 36 36 H 1.07999 * 122.54425 * 0.02562 * 20 19 14 37 37 H 1.08000 * 122.53935 * 180.19725 * 21 20 19 38 38 H 1.07998 * 125.19639 * 179.79357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 5.5412 -1.1011 2.4130 9 14 3.3016 -2.1087 3.6953 10 1 3.1701 -3.5387 3.3168 11 1 4.0454 -2.0021 4.9762 12 1 1.9508 -1.5130 3.8561 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2228 -2.3469 15 1 1.2576 0.9330 -2.2907 16 6 1.9771 -0.5795 -3.6454 17 6 0.5985 -1.2377 -3.7277 18 8 0.4998 -1.9866 -4.9408 19 6 3.3912 0.9697 -2.3227 20 6 3.5461 2.2594 -2.6256 21 6 4.8446 2.7293 -2.5293 22 6 5.7455 1.8189 -2.1568 23 16 4.9489 0.2723 -1.8980 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 6.0256 -1.5078 3.1483 30 1 2.9174 -1.1204 -1.0288 31 1 2.1125 0.0877 -4.4967 32 1 2.7488 -1.3492 -3.6607 33 1 0.4630 -1.9049 -2.8765 34 1 -0.1732 -0.4681 -3.7125 35 1 -0.3500 -2.4325 -5.0598 36 1 2.7206 2.8901 -2.9208 37 1 5.1088 3.7544 -2.7433 38 1 6.8024 2.0034 -2.0329 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839552259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:39 Heat of formation + Delta-G solvation = -51.624022 kcal Electronic energy + Delta-G solvation = -18983.176071 eV Core-core repulsion = 16143.842103 eV Total energy + Delta-G solvation = -2839.333967 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71871 -38.00577 -37.52344 -35.17993 -33.91008 -30.53964 -30.06983 -29.42349 -25.95593 -24.55242 -23.87018 -21.86613 -21.18768 -20.10525 -18.84688 -18.46681 -17.84577 -16.88640 -16.40243 -16.29004 -15.84000 -15.30252 -14.92579 -14.49918 -14.44398 -13.93344 -13.72626 -13.57763 -13.45568 -13.33058 -13.12932 -12.91067 -12.54436 -12.41341 -12.32600 -12.10278 -11.84860 -11.72222 -11.41647 -11.17867 -11.16304 -10.74121 -10.67381 -9.55309 -9.36383 -9.18508 -8.16285 -6.18352 0.16727 0.80439 1.23346 1.36669 1.38988 1.48460 1.90468 2.42075 3.13399 3.32042 3.42037 3.95114 4.14803 4.25948 4.31558 4.37585 4.47517 4.59133 4.60783 4.68846 4.73176 4.74499 4.90307 5.02419 5.17136 5.17493 5.20648 5.23709 5.27314 5.39685 5.43582 5.56152 5.66806 5.76494 6.31037 6.41366 6.51612 6.94469 6.99900 7.45334 8.97050 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.007737 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.299165 B = 3618.335020 C = 4828.268604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.099 3.901 3 H 0.023 0.977 4 C -0.017 4.017 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.252 1.252 13 N -0.672 5.672 14 C 0.164 3.836 15 H 0.106 0.894 16 C -0.095 4.095 17 C 0.089 3.911 18 O -0.598 6.598 19 C -0.211 4.211 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.234 4.234 23 S 0.083 5.917 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.342 0.658 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.396 0.604 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 4.648 -11.965 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.010 4.010 3 H 0.041 0.959 4 C -0.055 4.055 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.175 1.175 13 N -0.303 5.303 14 C 0.051 3.949 15 H 0.124 0.876 16 C -0.134 4.134 17 C 0.011 3.989 18 O -0.406 6.406 19 C -0.330 4.330 20 C -0.176 4.176 21 C -0.169 4.169 22 C -0.370 4.370 23 S 0.348 5.652 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.950 3.112 -11.645 15.013 hybrid contribution 0.345 1.161 1.020 1.584 sum -8.606 4.273 -10.625 14.325 Atomic orbital electron populations 1.21764 0.93392 1.02103 1.01488 1.21344 0.95474 0.94862 0.89367 0.95915 1.19754 0.94996 0.96149 0.94583 1.21825 0.91928 1.33713 1.09419 0.90757 1.25761 0.95286 0.97051 1.00184 1.70053 1.08077 1.47110 1.33140 0.85931 0.79841 0.79537 0.78891 1.20000 1.21857 1.17550 1.60920 1.33817 1.31079 1.04531 1.20178 0.90768 0.92466 0.91463 0.87610 1.21399 0.97565 0.98862 0.95574 1.22006 0.96143 0.94692 0.86023 1.86393 1.42498 1.69663 1.42050 1.25733 0.99286 0.99437 1.08555 1.20374 0.98644 0.94434 1.04178 1.20427 0.92141 1.01471 1.02881 1.25903 1.04596 0.96523 1.09936 1.85118 1.00734 1.13624 1.65711 0.92287 0.92471 0.91635 0.96285 0.96385 0.93121 0.83755 0.90660 0.93240 0.92728 0.92310 0.75495 0.82173 0.81888 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.40 71.98 0.68 -3.05 16 2 C 0.10 3.69 2.40 44.92 0.11 3.80 16 3 H 0.02 0.92 7.64 -2.39 -0.02 0.90 16 4 C -0.02 -0.78 3.64 29.85 0.11 -0.67 16 5 C -0.53 -28.90 8.67 25.60 0.22 -28.68 16 6 H 0.07 4.21 5.94 -2.91 -0.02 4.19 16 7 C 0.01 0.81 5.47 84.66 0.46 1.28 16 8 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 9 Si 0.93 44.39 27.47 68.60 1.88 46.28 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 N -0.67 -23.81 5.51 -473.29 -2.61 -26.42 16 14 C 0.16 4.86 2.24 44.17 0.10 4.96 16 15 H 0.11 2.76 7.09 -2.39 -0.02 2.74 16 16 C -0.10 -2.62 5.24 30.59 0.16 -2.46 16 17 C 0.09 2.09 6.93 71.98 0.50 2.59 16 18 O -0.60 -13.84 13.66 -148.98 -2.04 -15.87 16 19 C -0.21 -6.90 5.11 24.59 0.13 -6.78 16 20 C -0.15 -4.16 10.04 21.22 0.21 -3.95 16 21 C -0.14 -3.92 10.18 21.22 0.22 -3.70 16 22 C -0.23 -7.58 11.23 66.72 0.75 -6.83 16 23 S 0.08 3.16 20.35 -56.49 -1.15 2.02 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.56 7.43 -2.39 -0.02 1.54 16 27 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 28 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.34 14.38 5.79 -89.69 -0.52 13.86 16 31 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.39 7.75 -2.39 -0.02 1.38 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.40 5.22 9.12 -74.06 -0.68 4.55 16 36 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -65.83 320.96 -0.16 -65.99 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.19 Total: 28.97 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.64 Total: -43.49 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.31 Total: -83.89 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -2.04 Total: -15.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.15 Total: 2.02 kcal Total: -65.83 -0.16 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839552259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.369 kcal (2) G-P(sol) polarization free energy of solvation -65.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds