Wall clock time and date at job start Mon Mar 30 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35951 * 116.99905 * 2 1 4 4 C 1.38604 * 120.03427 * 359.97438 * 3 2 1 5 5 C 1.38628 * 119.91738 * 180.02562 * 4 3 2 6 6 O 1.35938 * 120.00965 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00030 * 359.97438 * 6 5 4 8 8 C 1.38743 * 119.98505 * 0.02562 * 5 4 3 9 9 C 1.50697 * 119.96576 * 179.97438 * 8 5 4 10 10 N 1.46905 * 109.47066 * 80.00032 * 9 8 5 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47043 * 89.99858 * 16 14 12 18 18 H 1.48494 * 109.47326 * 209.99769 * 16 14 12 19 19 H 1.48497 * 109.47436 * 330.00047 * 16 14 12 20 20 C 1.38212 * 120.06701 * 0.27039 * 8 5 4 21 21 C 1.38335 * 120.08157 * 359.45543 * 20 8 5 22 22 F 1.35095 * 119.98999 * 180.25356 * 21 20 8 23 23 H 1.08997 * 109.47119 * 60.00668 * 1 2 3 24 24 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46944 * 299.99808 * 1 2 3 26 26 H 1.07997 * 120.04205 * 0.02562 * 4 3 2 27 27 H 1.08991 * 109.47373 * 59.99184 * 7 6 5 28 28 H 1.08998 * 109.47049 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46547 * 299.99203 * 7 6 5 30 30 H 1.09001 * 109.47558 * 320.00196 * 9 8 5 31 31 H 1.08998 * 109.47216 * 199.99858 * 9 8 5 32 32 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 33 33 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 34 34 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 35 35 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 36 36 H 1.07994 * 119.95629 * 179.70602 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3742 -0.0005 5 6 1.9238 3.6081 -0.0011 6 8 1.1860 4.7498 -0.0011 7 6 -0.2355 4.6036 -0.0011 8 6 3.3095 3.6776 -0.0016 9 6 3.9959 5.0191 -0.0028 10 7 4.0054 5.5655 1.3608 11 6 4.6677 6.8762 1.3982 12 6 4.6586 7.4036 2.8098 13 1 4.2057 6.8233 3.6002 14 6 5.2275 8.6274 3.0923 15 7 5.7785 9.3342 2.1298 16 14 5.2156 9.2814 4.8420 17 1 6.4406 8.8276 5.5484 18 1 5.1806 10.7656 4.8155 19 1 4.0162 8.7706 5.5533 20 6 4.0610 2.5176 -0.0073 21 6 3.4334 1.2848 -0.0010 22 9 4.1698 0.1522 -0.0014 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2134 2.3191 -0.0005 27 1 -0.5444 4.0552 0.8887 28 1 -0.7021 5.5886 -0.0006 29 1 -0.5443 4.0553 -0.8912 30 1 3.4604 5.7008 -0.6636 31 1 5.0210 4.9025 -0.3545 32 1 4.4398 4.9220 2.0052 33 1 5.6974 6.7729 1.0560 34 1 4.1364 7.5704 0.7472 35 1 6.1791 10.1949 2.3286 36 1 5.1395 2.5737 -0.0125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845964927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:20 Heat of formation + Delta-G solvation = -92.584672 kcal Electronic energy + Delta-G solvation = -20248.371848 eV Core-core repulsion = 16841.048518 eV Total energy + Delta-G solvation = -3407.323330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.61409 -40.54012 -38.89696 -36.92599 -34.96272 -32.53741 -30.62082 -29.93073 -28.17354 -27.38065 -26.19041 -24.08780 -22.38335 -21.57769 -21.03165 -18.84826 -17.43575 -17.09724 -16.54377 -16.32328 -15.91590 -15.54178 -15.03617 -14.81748 -14.68832 -14.56917 -14.24889 -13.87367 -13.36358 -13.25873 -12.60459 -12.36173 -12.21284 -11.96662 -11.65302 -11.59794 -11.38379 -11.21876 -10.94569 -10.68923 -10.57489 -10.43642 -9.88562 -9.16180 -8.78013 -8.44689 -7.77621 -7.21312 -5.99761 -4.01141 1.13670 1.29107 2.97043 3.31497 3.34161 3.39967 3.44728 3.54222 4.27031 4.46586 4.60325 4.73043 4.83546 4.87508 4.99164 5.09085 5.13050 5.18756 5.36231 5.41179 5.46681 5.57337 5.65907 5.82980 5.91926 6.05230 6.31265 6.52583 6.59399 7.03398 7.29219 7.44472 7.47045 7.82492 8.16716 8.44975 8.65658 9.08205 9.63390 11.11398 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.004122 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.602205 B = 6791.628428 C = 7264.361227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.127 3.873 4 C -0.278 4.278 5 C 0.183 3.817 6 O -0.285 6.285 7 C 0.025 3.975 8 C -0.110 4.110 9 C 0.109 3.891 10 N -0.680 5.680 11 C 0.194 3.806 12 C -0.511 4.511 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.074 4.074 21 C 0.027 3.973 22 F -0.138 7.138 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.141 0.859 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.328 0.672 33 H -0.014 1.014 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 -16.032 -6.750 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.080 3.920 4 C -0.298 4.298 5 C 0.136 3.864 6 O -0.196 6.196 7 C -0.070 4.070 8 C -0.111 4.111 9 C -0.021 4.021 10 N -0.310 5.310 11 C 0.068 3.932 12 C -0.550 4.550 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.094 4.094 21 C 0.007 3.993 22 F -0.117 7.117 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.144 0.856 33 H 0.004 0.996 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.225 -15.588 -6.840 20.958 hybrid contribution 0.546 -0.061 0.823 0.989 sum -11.679 -15.649 -6.017 20.433 Atomic orbital electron populations 1.23085 0.78240 1.04047 1.01446 1.86128 1.21510 1.25942 1.88681 1.18625 0.90539 0.84800 0.98021 1.21091 1.00485 0.91199 1.16985 1.18545 0.90794 0.84509 0.92587 1.86326 1.18360 1.27719 1.87225 1.23087 0.79182 1.04098 1.00651 1.19186 0.90220 0.96105 1.05607 1.20641 0.96789 0.90459 0.94184 1.60688 1.60448 1.06157 1.03716 1.19566 0.91371 0.84641 0.97614 1.21186 1.36481 1.03463 0.93880 0.92000 1.24983 0.95428 0.96796 0.97382 1.69968 1.38666 1.13300 1.31889 0.86491 0.78382 0.77878 0.84608 1.20751 1.21278 1.19811 1.20778 1.00875 0.89011 0.98686 1.16717 0.85695 0.82894 1.14028 1.91461 1.76471 1.48875 1.94858 0.92601 0.88057 0.92472 0.84156 0.92793 0.87921 0.93155 0.90341 0.95319 0.85607 0.99596 0.95266 0.92962 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.36 -19.58 -0.20 -4.07 16 3 C 0.13 1.74 6.69 -39.20 -0.26 1.48 16 4 C -0.28 -3.53 8.02 -39.30 -0.32 -3.84 16 5 C 0.18 2.75 6.66 -39.25 -0.26 2.49 16 6 O -0.28 -4.36 9.72 -19.54 -0.19 -4.55 16 7 C 0.03 0.25 9.81 101.05 0.99 1.25 16 8 C -0.11 -1.75 5.41 -104.45 -0.56 -2.31 16 9 C 0.11 1.99 5.47 -4.97 -0.03 1.96 16 10 N -0.68 -14.93 6.48 -116.34 -0.75 -15.68 16 11 C 0.19 5.16 5.44 -4.98 -0.03 5.13 16 12 C -0.51 -14.67 9.32 -34.44 -0.32 -15.00 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 C -0.07 -1.07 9.64 -39.56 -0.38 -1.46 16 21 C 0.03 0.39 7.31 -39.30 -0.29 0.11 16 22 F -0.14 -2.12 17.11 2.25 0.04 -2.08 16 23 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.14 1.36 4.53 -52.49 -0.24 1.12 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 31 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.33 6.95 8.72 -39.29 -0.34 6.61 16 33 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.15 1.89 8.03 -52.49 -0.42 1.47 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -32.69 313.30 -5.88 -38.58 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.65 Total: 0.03 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.56 Total: -7.50 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.02 Total: -41.99 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.39 Total: -8.62 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.69 -5.88 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845964927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.008 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds