Wall clock time and date at job start Mon Mar 30 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35951 * 116.99905 * 2 1 4 4 C 1.38604 * 120.03427 * 359.97438 * 3 2 1 5 5 C 1.38628 * 119.91738 * 180.02562 * 4 3 2 6 6 O 1.35938 * 120.00965 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00030 * 359.97438 * 6 5 4 8 8 C 1.38743 * 119.98505 * 0.02562 * 5 4 3 9 9 C 1.50697 * 119.96576 * 179.97438 * 8 5 4 10 10 N 1.46905 * 109.47066 * 80.00032 * 9 8 5 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47043 * 89.99858 * 16 14 12 18 18 H 1.48494 * 109.47326 * 209.99769 * 16 14 12 19 19 H 1.48497 * 109.47436 * 330.00047 * 16 14 12 20 20 C 1.38212 * 120.06701 * 0.27039 * 8 5 4 21 21 C 1.38335 * 120.08157 * 359.45543 * 20 8 5 22 22 F 1.35095 * 119.98999 * 180.25356 * 21 20 8 23 23 H 1.08997 * 109.47119 * 60.00668 * 1 2 3 24 24 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46944 * 299.99808 * 1 2 3 26 26 H 1.07997 * 120.04205 * 0.02562 * 4 3 2 27 27 H 1.08991 * 109.47373 * 59.99184 * 7 6 5 28 28 H 1.08998 * 109.47049 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46547 * 299.99203 * 7 6 5 30 30 H 1.09001 * 109.47558 * 320.00196 * 9 8 5 31 31 H 1.08998 * 109.47216 * 199.99858 * 9 8 5 32 32 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 33 33 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 34 34 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 35 35 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 36 36 H 1.07994 * 119.95629 * 179.70602 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3742 -0.0005 5 6 1.9238 3.6081 -0.0011 6 8 1.1860 4.7498 -0.0011 7 6 -0.2355 4.6036 -0.0011 8 6 3.3095 3.6776 -0.0016 9 6 3.9959 5.0191 -0.0028 10 7 4.0054 5.5655 1.3608 11 6 4.6677 6.8762 1.3982 12 6 4.6586 7.4036 2.8098 13 1 4.2057 6.8233 3.6002 14 6 5.2275 8.6274 3.0923 15 7 5.7785 9.3342 2.1298 16 14 5.2156 9.2814 4.8420 17 1 6.4406 8.8276 5.5484 18 1 5.1806 10.7656 4.8155 19 1 4.0162 8.7706 5.5533 20 6 4.0610 2.5176 -0.0073 21 6 3.4334 1.2848 -0.0010 22 9 4.1698 0.1522 -0.0014 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2134 2.3191 -0.0005 27 1 -0.5444 4.0552 0.8887 28 1 -0.7021 5.5886 -0.0006 29 1 -0.5443 4.0553 -0.8912 30 1 3.4604 5.7008 -0.6636 31 1 5.0210 4.9025 -0.3545 32 1 4.4398 4.9220 2.0052 33 1 5.6974 6.7729 1.0560 34 1 4.1364 7.5704 0.7472 35 1 6.1791 10.1949 2.3286 36 1 5.1395 2.5737 -0.0125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845964927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:20 Heat of formation + Delta-G solvation = -115.739777 kcal Electronic energy + Delta-G solvation = -20249.375929 eV Core-core repulsion = 16841.048518 eV Total energy + Delta-G solvation = -3408.327411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.75965 -41.58342 -39.86474 -38.11734 -36.63899 -34.55645 -31.99933 -30.98786 -29.10262 -28.76001 -27.43673 -25.60676 -23.47839 -23.41565 -22.38089 -19.82052 -18.69363 -18.46868 -18.06227 -17.30104 -17.22774 -16.64960 -16.46550 -16.03512 -15.94587 -15.69593 -15.55305 -15.14945 -15.00842 -14.63520 -14.05767 -13.69661 -13.38796 -13.19618 -12.92289 -12.82242 -12.61048 -12.57553 -12.42739 -12.38987 -12.14698 -11.85214 -11.45335 -11.26350 -10.64111 -9.82701 -9.08403 -8.87615 -8.19951 -6.30916 0.05888 0.17069 1.42559 1.44280 1.56115 2.11995 2.34307 2.40044 2.45869 3.13161 3.20151 3.54835 3.71661 3.79870 3.94611 4.25939 4.34618 4.36456 4.40809 4.42193 4.44487 4.53228 4.70116 4.74099 4.79874 4.87067 4.91143 5.10504 5.28761 5.33459 5.50856 5.63516 6.04361 6.11428 6.42781 6.49648 6.73904 6.91320 7.39678 8.91548 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.004122 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.602205 B = 6791.628428 C = 7264.361227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.134 3.866 4 C -0.267 4.267 5 C 0.179 3.821 6 O -0.317 6.317 7 C 0.014 3.986 8 C -0.134 4.134 9 C 0.116 3.884 10 N -0.678 5.678 11 C 0.210 3.790 12 C -0.534 4.534 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.067 4.067 21 C 0.006 3.994 22 F -0.144 7.144 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.068 0.932 26 H 0.174 0.826 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.332 0.668 33 H -0.037 1.037 34 H 0.001 0.999 35 H 0.265 0.735 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 -17.144 -5.904 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.087 3.913 4 C -0.286 4.286 5 C 0.131 3.869 6 O -0.229 6.229 7 C -0.081 4.081 8 C -0.135 4.135 9 C -0.013 4.013 10 N -0.308 5.308 11 C 0.082 3.918 12 C -0.572 4.572 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.087 4.087 21 C -0.014 4.014 22 F -0.123 7.123 23 H 0.090 0.910 24 H 0.143 0.857 25 H 0.087 0.913 26 H 0.191 0.809 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.149 0.851 33 H -0.019 1.019 34 H 0.019 0.981 35 H 0.074 0.926 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.004 -16.732 -6.003 22.629 hybrid contribution 0.972 0.195 0.487 1.104 sum -13.032 -16.537 -5.516 21.765 Atomic orbital electron populations 1.23491 0.75582 1.06195 1.02770 1.86130 1.24271 1.25266 1.88195 1.18734 0.90322 0.85701 0.96518 1.21273 1.01966 0.89696 1.15685 1.18673 0.90554 0.85388 0.92254 1.86285 1.20962 1.28447 1.87218 1.23420 0.76631 1.05483 1.02518 1.18950 0.91036 0.94854 1.08667 1.20522 0.97275 0.91735 0.91803 1.60551 1.59445 1.04734 1.06080 1.19207 0.89891 0.86456 0.96246 1.21525 1.36871 1.04110 0.94683 0.91921 1.25940 0.94667 0.96937 1.02094 1.70096 1.39237 1.13772 1.34330 0.85329 0.78849 0.77228 0.78857 1.19707 1.20643 1.18959 1.20793 1.01347 0.88684 0.97839 1.16872 0.86489 0.82653 1.15340 1.91438 1.76751 1.49102 1.95040 0.90974 0.85732 0.91317 0.80909 0.91429 0.87065 0.90614 0.91553 0.94870 0.85082 1.01932 0.98118 0.92623 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -7.34 10.36 -92.99 -0.96 -8.31 16 3 C 0.13 3.44 6.69 22.52 0.15 3.59 16 4 C -0.27 -6.14 8.02 22.45 0.18 -5.96 16 5 C 0.18 5.19 6.66 22.48 0.15 5.34 16 6 O -0.32 -9.43 9.72 -92.85 -0.90 -10.34 16 7 C 0.01 0.24 9.81 113.37 1.11 1.36 16 8 C -0.13 -4.26 5.41 -19.75 -0.11 -4.37 16 9 C 0.12 4.36 5.47 85.55 0.47 4.83 16 10 N -0.68 -30.52 6.48 -521.98 -3.38 -33.90 16 11 C 0.21 11.54 5.44 85.56 0.47 12.01 16 12 C -0.53 -31.07 9.32 25.60 0.24 -30.83 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 16 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.07 -1.94 9.64 22.29 0.21 -1.73 16 21 C 0.01 0.18 7.31 22.45 0.16 0.35 16 22 F -0.14 -4.35 17.11 44.97 0.77 -3.58 16 23 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 24 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.17 2.68 4.53 -2.91 -0.01 2.67 16 27 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 28 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 0.96 7.66 -2.38 -0.02 0.94 16 30 H 0.07 2.63 7.85 -2.39 -0.02 2.61 16 31 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 32 H 0.33 14.36 8.72 -89.69 -0.78 13.57 16 33 H -0.04 -2.16 8.14 -2.39 -0.02 -2.18 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.16 4.03 8.03 -2.91 -0.02 4.00 16 Total: -1.00 -71.08 313.30 2.77 -68.31 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.32 Total: 11.37 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.61 Total: -13.58 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -3.10 Total: -90.69 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.87 Total: -18.64 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.08 2.77 -68.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845964927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.430 kcal (2) G-P(sol) polarization free energy of solvation -71.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds