Wall clock time and date at job start Mon Mar 30 2020 00:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00104 * 2 1 4 4 C 1.53006 * 109.47150 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46819 * 180.02562 * 4 3 2 6 6 C 1.34784 * 126.58671 * 125.00434 * 5 4 3 7 7 C 1.36668 * 106.83741 * 180.23977 * 6 5 4 8 8 C 1.47378 * 125.78024 * 179.73707 * 7 6 5 9 9 O 1.21518 * 120.00371 * 359.97438 * 8 7 6 10 10 O 1.34755 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.45206 * 116.99856 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46825 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99612 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00044 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00326 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99661 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47482 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47067 * 119.99757 * 17 15 13 20 20 H 1.48505 * 109.47021 * 239.99393 * 17 15 13 21 21 N 1.34445 * 108.43336 * 359.59971 * 7 6 5 22 22 N 1.28756 * 109.51685 * 0.40680 * 21 7 6 23 23 H 1.08992 * 109.47679 * 300.00404 * 1 2 3 24 24 H 1.09006 * 109.46946 * 60.00420 * 1 2 3 25 25 H 1.09000 * 109.47461 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47085 * 59.99796 * 3 2 1 27 27 H 1.08997 * 109.47024 * 299.99500 * 3 2 1 28 28 H 1.08994 * 109.47097 * 60.00044 * 4 3 2 29 29 H 1.08997 * 109.46945 * 299.99789 * 4 3 2 30 30 H 1.08002 * 126.57778 * 359.96682 * 6 5 4 31 31 H 1.08998 * 109.46776 * 299.99914 * 11 10 8 32 32 H 1.08993 * 109.47011 * 60.00269 * 11 10 8 33 33 H 1.08996 * 109.47417 * 300.00490 * 12 11 10 34 34 H 1.09007 * 109.47299 * 60.00272 * 12 11 10 35 35 H 0.96996 * 120.00004 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0248 3.0042 0.8883 7 6 5.3020 4.2889 0.5136 8 6 6.2273 5.2066 1.2018 9 8 6.8216 4.8380 2.1956 10 8 6.4144 6.4545 0.7290 11 6 7.3398 7.3037 1.4577 12 6 7.4207 8.6716 0.7771 13 6 8.3816 9.5528 1.5330 14 1 8.8840 9.1750 2.4113 15 6 8.6185 10.8415 1.1040 16 7 8.0064 11.3017 0.0348 17 14 9.8101 11.9333 2.0406 18 1 10.3632 11.1844 3.1975 19 1 10.9179 12.3434 1.1405 20 1 9.0962 13.1406 2.5287 21 7 4.5898 4.5727 -0.5908 22 7 3.8817 3.5492 -0.9209 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8574 0.6436 -0.8891 29 1 3.8567 0.6439 0.8909 30 1 5.4385 2.4772 1.7353 31 1 6.9889 7.4281 2.4822 32 1 8.3272 6.8423 1.4653 33 1 7.7712 8.5475 -0.2475 34 1 6.4330 9.1328 0.7699 35 1 8.1734 12.2081 -0.2671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853919576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:25 Heat of formation + Delta-G solvation = -38.059355 kcal Electronic energy + Delta-G solvation = -19230.080706 eV Core-core repulsion = 15845.041733 eV Total energy + Delta-G solvation = -3385.038974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.42162 -39.64536 -38.60029 -36.09301 -35.26541 -33.29386 -31.46685 -30.58805 -29.90746 -27.02412 -25.38182 -24.47396 -23.75202 -22.07402 -21.05396 -20.45687 -18.30516 -17.18126 -16.96667 -16.63851 -16.32360 -15.98194 -15.80906 -15.69336 -15.17363 -14.77120 -14.48251 -14.17279 -13.25605 -13.07372 -12.75952 -12.47759 -12.33265 -12.13599 -11.94218 -11.35435 -11.22131 -11.00118 -10.74513 -10.71078 -10.67454 -10.40459 -10.34057 -9.65669 -9.61845 -9.48119 -9.24073 -8.40220 -6.05701 -4.10143 0.84187 1.54645 1.56328 3.03935 3.13169 3.18547 3.30566 3.37847 3.42683 3.98064 4.08879 4.21947 4.41983 4.55095 4.59486 4.72741 4.78060 4.86324 4.90302 5.01587 5.14062 5.23337 5.30644 5.63647 5.99460 6.09928 6.12769 6.41500 6.67448 6.90420 7.60023 7.69148 7.73434 7.91917 8.18626 8.28945 8.95818 9.53880 11.05814 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057006 B = 0.002636 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.060346 B =10619.809255 C =10880.833198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.365 5.365 6 C 0.102 3.898 7 C -0.077 4.077 8 C 0.548 3.452 9 O -0.514 6.514 10 O -0.336 6.336 11 C 0.075 3.925 12 C 0.023 3.977 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.172 5.172 22 N -0.065 5.065 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.210 0.790 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 -23.994 0.830 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.054 4.054 7 C -0.214 4.214 8 C 0.390 3.610 9 O -0.404 6.404 10 O -0.250 6.250 11 C 0.003 3.997 12 C -0.014 4.014 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.046 5.046 22 N -0.046 5.046 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.227 0.773 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.549 -23.700 -0.233 27.301 hybrid contribution 0.956 0.459 1.419 1.771 sum -12.593 -23.241 1.186 26.460 Atomic orbital electron populations 1.22810 0.79598 1.03275 1.00615 1.87770 1.20848 1.26473 1.95652 1.22636 0.91858 0.85792 1.02617 1.21688 0.93229 0.77930 1.06669 1.50332 1.30567 1.13681 1.20510 1.23341 0.92030 0.94428 0.95614 1.20529 1.07246 0.94252 0.99355 1.19406 0.78681 0.81714 0.81189 1.90840 1.47124 1.77259 1.25129 1.86688 1.60906 1.22195 1.55207 1.23745 0.89521 0.91033 0.95446 1.19188 0.98459 0.86872 0.96859 1.21013 1.25548 0.97459 1.12312 0.92166 1.24994 0.96225 0.97920 0.95117 1.69991 1.42312 1.16912 1.23493 0.86419 0.80705 0.80361 0.79825 1.19602 1.20869 1.20878 1.74871 1.02591 1.17871 1.09276 1.82081 1.20344 0.90433 1.11725 0.93645 0.93489 0.89019 0.92196 0.91080 0.87220 0.86668 0.77330 0.92058 0.92036 0.95174 0.95189 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.60 10.70 -35.23 -0.38 -2.98 16 3 C 0.05 0.31 6.14 37.16 0.23 0.53 16 4 C 0.13 0.71 6.91 -4.04 -0.03 0.68 16 5 N -0.37 -3.53 3.69 -61.05 -0.23 -3.75 16 6 C 0.10 1.06 11.27 -16.82 -0.19 0.87 16 7 C -0.08 -1.18 7.02 -83.57 -0.59 -1.76 16 8 C 0.55 10.14 7.96 34.45 0.27 10.42 16 9 O -0.51 -9.87 16.65 -19.28 -0.32 -10.19 16 10 O -0.34 -7.22 10.23 -40.64 -0.42 -7.63 16 11 C 0.07 1.71 5.41 37.16 0.20 1.91 16 12 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 13 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 N -0.17 -2.84 12.39 32.83 0.41 -2.43 16 22 N -0.06 -0.89 13.64 60.35 0.82 -0.06 16 23 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.12 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -34.43 320.70 -3.72 -38.15 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: -4.61 Total: -7.20 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 0.45 Total: 0.73 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 1.74 Total: -32.31 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.11 Total: -20.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.43 -3.72 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853919576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.087 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds