Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00104 * 2 1 4 4 C 1.53006 * 109.47150 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46819 * 180.02562 * 4 3 2 6 6 C 1.34784 * 126.58671 * 125.00434 * 5 4 3 7 7 C 1.36668 * 106.83741 * 180.23977 * 6 5 4 8 8 C 1.47378 * 125.78024 * 179.73707 * 7 6 5 9 9 O 1.21518 * 120.00371 * 359.97438 * 8 7 6 10 10 O 1.34755 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.45206 * 116.99856 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46825 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99612 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00044 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00326 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99661 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47482 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47067 * 119.99757 * 17 15 13 20 20 H 1.48505 * 109.47021 * 239.99393 * 17 15 13 21 21 N 1.34445 * 108.43336 * 359.59971 * 7 6 5 22 22 N 1.28756 * 109.51685 * 0.40680 * 21 7 6 23 23 H 1.08992 * 109.47679 * 300.00404 * 1 2 3 24 24 H 1.09006 * 109.46946 * 60.00420 * 1 2 3 25 25 H 1.09000 * 109.47461 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47085 * 59.99796 * 3 2 1 27 27 H 1.08997 * 109.47024 * 299.99500 * 3 2 1 28 28 H 1.08994 * 109.47097 * 60.00044 * 4 3 2 29 29 H 1.08997 * 109.46945 * 299.99789 * 4 3 2 30 30 H 1.08002 * 126.57778 * 359.96682 * 6 5 4 31 31 H 1.08998 * 109.46776 * 299.99914 * 11 10 8 32 32 H 1.08993 * 109.47011 * 60.00269 * 11 10 8 33 33 H 1.08996 * 109.47417 * 300.00490 * 12 11 10 34 34 H 1.09007 * 109.47299 * 60.00272 * 12 11 10 35 35 H 0.96996 * 120.00004 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0248 3.0042 0.8883 7 6 5.3020 4.2889 0.5136 8 6 6.2273 5.2066 1.2018 9 8 6.8216 4.8380 2.1956 10 8 6.4144 6.4545 0.7290 11 6 7.3398 7.3037 1.4577 12 6 7.4207 8.6716 0.7771 13 6 8.3816 9.5528 1.5330 14 1 8.8840 9.1750 2.4113 15 6 8.6185 10.8415 1.1040 16 7 8.0064 11.3017 0.0348 17 14 9.8101 11.9333 2.0406 18 1 10.3632 11.1844 3.1975 19 1 10.9179 12.3434 1.1405 20 1 9.0962 13.1406 2.5287 21 7 4.5898 4.5727 -0.5908 22 7 3.8817 3.5492 -0.9209 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8574 0.6436 -0.8891 29 1 3.8567 0.6439 0.8909 30 1 5.4385 2.4772 1.7353 31 1 6.9889 7.4281 2.4822 32 1 8.3272 6.8423 1.4653 33 1 7.7712 8.5475 -0.2475 34 1 6.4330 9.1328 0.7699 35 1 8.1734 12.2081 -0.2671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853919576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = -62.754472 kcal Electronic energy + Delta-G solvation = -19231.151567 eV Core-core repulsion = 15845.041733 eV Total energy + Delta-G solvation = -3386.109834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.41661 -41.16659 -39.07434 -37.70638 -36.05421 -35.42310 -32.62416 -32.15533 -30.97764 -27.56066 -27.16470 -25.25200 -25.09362 -22.93940 -22.89864 -21.79956 -19.41427 -18.57293 -17.90514 -17.81455 -17.62669 -17.35664 -16.76042 -16.62016 -16.41305 -15.91879 -15.63920 -15.02506 -14.74996 -14.48328 -14.36226 -13.57485 -13.30096 -13.13636 -12.99632 -12.80306 -12.61481 -12.57261 -12.43417 -12.18172 -11.98491 -11.58542 -11.50796 -11.47471 -11.37767 -10.79587 -10.61532 -10.53877 -8.25229 -6.39023 -0.06414 0.33110 0.80508 1.42073 1.43605 1.56585 1.66755 1.87039 2.41103 2.64127 3.08672 3.09011 3.42087 3.69331 3.75007 3.79350 4.04745 4.18606 4.23513 4.25355 4.39640 4.44293 4.50420 4.60266 4.70212 4.73441 4.84941 5.22474 5.26688 5.47335 5.48088 5.74473 5.98316 6.06799 6.51881 6.75380 6.84785 7.30801 8.87947 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057006 B = 0.002636 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.060346 B =10619.809255 C =10880.833198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.347 5.347 6 C 0.141 3.859 7 C -0.113 4.113 8 C 0.550 3.450 9 O -0.523 6.523 10 O -0.357 6.357 11 C 0.091 3.909 12 C 0.028 3.972 13 C -0.546 4.546 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.978 3.022 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.214 5.214 22 N -0.079 5.079 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.256 0.744 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 -25.999 2.419 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.001 3.999 5 N -0.132 5.132 6 C -0.016 4.016 7 C -0.250 4.250 8 C 0.393 3.607 9 O -0.413 6.413 10 O -0.272 6.272 11 C 0.018 3.982 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.202 1.202 21 N -0.088 5.088 22 N -0.060 5.060 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.172 0.828 30 H 0.272 0.728 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.274 -25.751 1.345 29.002 hybrid contribution 0.725 0.894 0.884 1.451 sum -12.549 -24.857 2.228 27.934 Atomic orbital electron populations 1.22982 0.78636 1.04379 1.00960 1.87745 1.21953 1.26416 1.95693 1.22569 0.92333 0.85762 1.02077 1.22135 0.92684 0.75808 1.09285 1.50587 1.29546 1.14125 1.18971 1.23910 0.90002 0.92349 0.95363 1.20400 1.08528 0.95685 1.00411 1.19802 0.78875 0.80786 0.81204 1.90815 1.47790 1.77115 1.25549 1.86661 1.60903 1.23950 1.55697 1.23282 0.90393 0.89521 0.95029 1.19003 0.96686 0.89348 0.95855 1.21411 1.25975 0.98215 1.12811 0.91170 1.26045 0.98088 0.99577 0.96009 1.70128 1.43907 1.17621 1.25209 0.85212 0.78029 0.78064 0.78581 1.18234 1.20173 1.20160 1.74854 1.03851 1.19634 1.10501 1.81989 1.20244 0.90945 1.12862 0.93100 0.93394 0.87605 0.92117 0.92417 0.85878 0.82818 0.72787 0.91369 0.91368 0.97849 0.97844 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.46 10.70 -148.98 -1.59 -6.05 16 3 C 0.05 0.53 6.14 71.98 0.44 0.97 16 4 C 0.12 0.94 6.91 86.38 0.60 1.53 16 5 N -0.35 -5.81 3.69 -347.06 -1.28 -7.09 16 6 C 0.14 2.51 11.27 83.87 0.95 3.46 16 7 C -0.11 -3.37 7.02 40.78 0.29 -3.09 16 8 C 0.55 20.29 7.96 70.23 0.56 20.85 16 9 O -0.52 -19.51 16.65 19.78 0.33 -19.18 16 10 O -0.36 -15.80 10.23 -56.66 -0.58 -16.38 16 11 C 0.09 4.21 5.41 71.98 0.39 4.60 16 12 C 0.03 1.59 5.35 29.85 0.16 1.75 16 13 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 14 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 17 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 N -0.21 -7.15 12.39 -50.04 -0.62 -7.77 16 22 N -0.08 -2.11 13.64 37.02 0.51 -1.61 16 23 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 25 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.15 0.13 8.08 -2.39 -0.02 0.11 16 30 H 0.26 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.89 320.70 5.48 -71.41 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: 1.09 Total: -3.36 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.32 Total: 0.72 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.11 Total: -73.46 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.84 Total: -41.62 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.89 5.48 -71.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853919576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.651 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds