Wall clock time and date at job start Mon Mar 30 2020 00:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 18 18 O 1.42902 * 109.47281 * 299.99908 * 16 15 14 19 19 C 1.50702 * 109.47084 * 180.02562 * 16 15 14 20 20 C 1.38426 * 122.53455 * 264.73707 * 19 16 15 21 21 C 1.33391 * 114.91753 * 179.76073 * 20 19 16 22 22 S 1.75890 * 109.59204 * 0.47675 * 21 20 19 23 23 C 1.33378 * 122.54041 * 85.02388 * 19 16 15 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 28 28 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 31 31 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 32 32 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 33 33 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 34 34 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 35 35 H 0.96693 * 114.00076 * 300.00197 * 18 16 15 36 36 H 1.08001 * 122.54467 * 359.97438 * 20 19 16 37 37 H 1.08004 * 125.20567 * 180.20981 * 21 20 19 38 38 H 1.07998 * 125.20407 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 1 0.6166 0.2689 4.9165 18 8 2.2726 1.4996 4.8064 19 6 2.1907 -0.4895 6.1422 20 6 1.3950 -1.3492 6.8798 21 6 1.9811 -1.8711 7.9584 22 16 3.6242 -1.2578 8.0918 23 6 3.4193 -0.3051 6.6276 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 3.1262 -0.7995 -1.2056 29 1 2.9362 -2.0177 -3.0611 30 1 1.6053 -1.7199 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 1.9883 0.9872 2.3967 33 1 1.6921 -1.6248 3.7300 34 1 3.2127 -0.7039 3.6399 35 1 3.2391 1.5070 4.7782 36 1 0.3780 -1.5825 6.6011 37 1 1.5163 -2.5611 8.6471 38 1 4.1731 0.3315 6.1884 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877049190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:30 Heat of formation + Delta-G solvation = -39.634721 kcal Electronic energy + Delta-G solvation = -17820.080015 eV Core-core repulsion = 14981.265943 eV Total energy + Delta-G solvation = -2838.814072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50350 -37.07428 -36.09916 -33.93353 -31.99630 -30.23188 -28.38228 -26.40634 -25.36597 -23.75196 -22.35713 -21.86278 -19.42510 -19.17242 -18.37469 -16.85579 -16.66737 -16.05441 -15.24563 -14.54890 -14.37781 -14.18735 -13.69120 -13.56519 -13.33815 -13.13866 -12.93185 -12.65233 -12.21900 -11.87155 -11.63659 -11.62055 -11.32534 -11.07290 -10.96834 -10.66401 -10.49613 -10.12311 -10.05686 -9.79860 -9.42930 -9.14172 -8.71469 -8.44364 -8.27877 -8.20025 -6.30637 -3.98527 0.66573 1.32599 1.64481 2.33239 3.46744 3.48794 3.67272 4.14329 4.22937 4.58742 4.61877 4.80846 4.91819 4.99198 5.10040 5.23964 5.45682 5.53609 5.56471 5.68603 5.73969 5.83514 6.01201 6.06333 6.18352 6.32508 6.45297 6.61452 6.90250 7.08191 7.13979 7.24593 7.35903 7.43350 7.58083 7.64988 8.29196 8.52560 8.94611 9.72929 11.09818 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047258 B = 0.002799 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.355316 B =10000.224311 C =10122.307711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.035 3.965 16 C 0.169 3.831 17 H 0.117 0.883 18 O -0.550 6.550 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.211 4.211 22 S 0.096 5.904 23 C -0.206 4.206 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.007 0.993 28 H 0.002 0.998 29 H 0.267 0.733 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.344 0.656 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.369 0.631 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 0.740 24.579 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.096 4.096 16 C 0.107 3.893 17 H 0.135 0.865 18 O -0.355 6.355 19 C -0.142 4.142 20 C -0.155 4.155 21 C -0.347 4.347 22 S 0.359 5.641 23 C -0.342 4.342 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.216 0.784 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.615 0.410 24.016 24.027 hybrid contribution 0.380 0.019 0.744 0.835 sum 0.995 0.429 24.759 24.783 Atomic orbital electron populations 1.21576 0.95452 1.00515 1.00395 1.21058 0.96214 0.98858 0.93306 0.92641 1.19251 0.95077 0.95620 0.92389 1.22039 1.38633 1.10228 0.92257 0.93178 1.25830 0.94722 0.97168 1.01394 1.70782 1.36008 1.15068 1.33464 0.83567 0.76079 0.75136 0.75635 1.20869 1.21455 1.21514 1.22169 0.96982 0.97720 0.89637 1.60432 1.63934 1.06137 1.00907 1.22577 0.97587 0.98855 0.90564 1.20628 0.98976 0.81434 0.88291 0.86513 1.86663 1.24861 1.27492 1.96446 1.19679 0.94019 1.00700 0.99833 1.20072 1.01585 0.98606 0.95224 1.25630 0.97899 1.07496 1.03653 1.84284 1.13066 1.41724 1.24993 1.25329 1.00853 1.06946 1.01074 0.92626 0.94299 0.93701 0.97509 0.97933 0.92221 0.91668 0.95992 0.83713 0.90184 0.95356 0.78365 0.83840 0.81720 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.57 2.48 -90.62 -0.22 -1.80 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.01 8.41 -34.44 -0.29 -17.30 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.52 13.65 55.43 0.76 -27.77 16 9 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.10 5.07 -3.83 -0.02 1.08 16 14 N -0.68 -9.87 5.96 -113.78 -0.68 -10.55 16 15 C 0.03 0.41 5.37 -3.82 -0.02 0.38 16 16 C 0.17 1.75 3.57 -27.88 -0.10 1.65 16 17 H 0.12 1.28 8.11 -51.93 -0.42 0.86 16 18 O -0.55 -5.88 12.50 -35.23 -0.44 -6.32 16 19 C -0.13 -1.23 4.91 -106.25 -0.52 -1.75 16 20 C -0.12 -1.10 9.96 -41.21 -0.41 -1.51 16 21 C -0.21 -1.68 11.23 29.04 0.33 -1.35 16 22 S 0.10 0.76 23.34 -107.50 -2.51 -1.75 16 23 C -0.21 -1.79 10.43 29.03 0.30 -1.48 16 24 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 28 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 29 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.34 4.93 8.12 -39.29 -0.32 4.61 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.37 2.79 7.78 45.56 0.35 3.15 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.16 1.10 7.14 -52.49 -0.37 0.72 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -31.89 327.33 -9.05 -40.94 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.20 Total: 3.56 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -0.83 Total: -23.66 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.08 Total: -38.31 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.44 Total: -6.32 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.89 -9.05 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877049190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.306 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds