Wall clock time and date at job start Mon Mar 30 2020 00:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 18 18 O 1.42902 * 109.47281 * 299.99908 * 16 15 14 19 19 C 1.50702 * 109.47084 * 180.02562 * 16 15 14 20 20 C 1.38426 * 122.53455 * 264.73707 * 19 16 15 21 21 C 1.33391 * 114.91753 * 179.76073 * 20 19 16 22 22 S 1.75890 * 109.59204 * 0.47675 * 21 20 19 23 23 C 1.33378 * 122.54041 * 85.02388 * 19 16 15 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 28 28 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 31 31 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 32 32 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 33 33 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 34 34 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 35 35 H 0.96693 * 114.00076 * 300.00197 * 18 16 15 36 36 H 1.08001 * 122.54467 * 359.97438 * 20 19 16 37 37 H 1.08004 * 125.20567 * 180.20981 * 21 20 19 38 38 H 1.07998 * 125.20407 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 1 0.6166 0.2689 4.9165 18 8 2.2726 1.4996 4.8064 19 6 2.1907 -0.4895 6.1422 20 6 1.3950 -1.3492 6.8798 21 6 1.9811 -1.8711 7.9584 22 16 3.6242 -1.2578 8.0918 23 6 3.4193 -0.3051 6.6276 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 3.1262 -0.7995 -1.2056 29 1 2.9362 -2.0177 -3.0611 30 1 1.6053 -1.7199 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 1.9883 0.9872 2.3967 33 1 1.6921 -1.6248 3.7300 34 1 3.2127 -0.7039 3.6399 35 1 3.2391 1.5070 4.7782 36 1 0.3780 -1.5825 6.6011 37 1 1.5163 -2.5611 8.6471 38 1 4.1731 0.3315 6.1884 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877049190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:30 Heat of formation + Delta-G solvation = -61.435692 kcal Electronic energy + Delta-G solvation = -17821.025376 eV Core-core repulsion = 14981.265943 eV Total energy + Delta-G solvation = -2839.759433 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27294 -38.37722 -37.11657 -35.59747 -33.79854 -31.02959 -29.39420 -28.32393 -26.71024 -25.11666 -23.89744 -22.76375 -21.07524 -19.90621 -19.03615 -18.83412 -17.61628 -17.11732 -16.29544 -15.86440 -15.63823 -15.55035 -15.33999 -14.88452 -14.49400 -13.92981 -13.86745 -13.76630 -13.44870 -13.33155 -13.12676 -12.92136 -12.85370 -12.50010 -12.34225 -11.97036 -11.93542 -11.75668 -11.59644 -11.37338 -11.10863 -10.55462 -10.51919 -9.77277 -9.41710 -9.33503 -8.65623 -6.34606 0.03534 0.71509 1.02326 1.52763 1.61371 1.66394 1.80335 2.58051 3.10999 3.18568 3.47887 3.90007 4.00104 4.05041 4.10725 4.15564 4.25438 4.40184 4.47344 4.58996 4.67301 4.76534 4.79917 4.85740 4.89338 5.07239 5.10023 5.31769 5.36275 5.37880 5.48121 5.49712 5.64159 5.94427 6.09058 6.22250 6.42666 6.62249 6.70313 7.46351 8.75155 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047258 B = 0.002799 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.355316 B =10000.224311 C =10122.307711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 H 0.052 0.948 4 C 0.016 3.984 5 C -0.605 4.605 6 H 0.052 0.948 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.116 2.884 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.681 5.681 15 C 0.038 3.962 16 C 0.180 3.820 17 H 0.111 0.889 18 O -0.563 6.563 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.213 4.213 22 S 0.105 5.895 23 C -0.214 4.214 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.069 0.931 27 H -0.014 1.014 28 H -0.018 1.018 29 H 0.254 0.746 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.347 0.653 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.382 0.618 36 H 0.153 0.847 37 H 0.186 0.814 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 1.598 25.709 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.071 0.929 7 C -0.240 4.240 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.052 4.052 14 N -0.313 5.313 15 C -0.091 4.091 16 C 0.119 3.881 17 H 0.128 0.872 18 O -0.369 6.369 19 C -0.155 4.155 20 C -0.171 4.171 21 C -0.348 4.348 22 S 0.368 5.632 23 C -0.350 4.350 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.005 0.995 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.232 0.768 36 H 0.170 0.830 37 H 0.203 0.797 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.185 1.275 25.186 25.219 hybrid contribution 0.554 -0.265 0.484 0.782 sum 0.739 1.010 25.671 25.701 Atomic orbital electron populations 1.21476 0.94519 1.00380 1.00613 1.20902 0.96861 0.98265 0.92728 0.92941 1.19189 0.93695 0.94904 0.94333 1.22448 1.38080 1.10390 0.93424 0.92937 1.27411 0.94041 0.97287 1.05223 1.70920 1.37940 1.16368 1.32809 0.82958 0.76973 0.74560 0.71825 1.21033 1.19404 1.19412 1.21853 0.96476 0.97358 0.89476 1.60354 1.64082 1.06122 1.00693 1.22602 0.97868 0.98843 0.89828 1.20402 0.98614 0.81130 0.88002 0.87170 1.86629 1.26228 1.27635 1.96439 1.19647 0.94590 1.01410 0.99807 1.20258 1.02233 0.98969 0.95681 1.25942 0.97822 1.07392 1.03643 1.84271 1.13150 1.41294 1.24440 1.25606 1.01001 1.07031 1.01343 0.94481 0.94595 0.91254 0.99522 0.99952 0.93691 0.91945 0.96421 0.83407 0.90293 0.94789 0.76850 0.82958 0.79694 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -2.84 2.48 -10.79 -0.03 -2.87 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.02 0.86 3.76 29.85 0.11 0.97 16 5 C -0.61 -34.97 8.41 25.60 0.22 -34.76 16 6 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 7 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 8 N -0.94 -59.68 13.65 21.45 0.29 -59.39 16 9 Si 1.12 51.13 29.90 68.60 2.05 53.18 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.08 2.65 5.07 86.30 0.44 3.08 16 14 N -0.68 -18.68 5.96 -513.90 -3.06 -21.74 16 15 C 0.04 0.85 5.37 86.30 0.46 1.31 16 16 C 0.18 3.47 3.57 29.85 0.11 3.57 16 17 H 0.11 2.26 8.11 -2.39 -0.02 2.24 16 18 O -0.56 -11.07 12.50 -148.98 -1.86 -12.93 16 19 C -0.14 -2.46 4.91 -20.92 -0.10 -2.57 16 20 C -0.14 -2.28 9.96 21.22 0.21 -2.06 16 21 C -0.21 -2.97 11.23 66.72 0.75 -2.22 16 22 S 0.10 1.48 23.34 -56.49 -1.32 0.16 16 23 C -0.21 -3.34 10.43 66.72 0.70 -2.64 16 24 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 27 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 28 H -0.02 -1.00 8.00 -2.39 -0.02 -1.02 16 29 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.35 9.35 8.12 -89.69 -0.73 8.62 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.38 5.07 7.78 -74.06 -0.58 4.50 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.18 2.05 7.14 -2.91 -0.02 2.02 16 Total: -1.00 -67.96 327.33 -0.08 -68.05 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.15 Total: 16.69 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 3.96 Total: -44.02 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.77 Total: -81.13 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.86 Total: -12.93 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -67.96 -0.08 -68.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877049190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.611 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds