Wall clock time and date at job start Mon Mar 30 2020 00:39:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.47836 * 2 1
4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3
5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1
6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2
7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2
8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4
9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5
11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5
12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5
13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3
14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1
15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2
16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13
17 17 H 1.09002 * 109.46933 * 60.00308 * 16 15 14
18 18 O 1.42902 * 109.47281 * 299.99908 * 16 15 14
19 19 C 1.50702 * 109.47084 * 180.02562 * 16 15 14
20 20 C 1.38426 * 122.53455 * 264.73707 * 19 16 15
21 21 C 1.33391 * 114.91753 * 179.76073 * 20 19 16
22 22 S 1.75890 * 109.59204 * 0.47675 * 21 20 19
23 23 C 1.33378 * 122.54041 * 85.02388 * 19 16 15
24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3
25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3
27 27 H 1.09004 * 109.47178 * 305.00572 * 4 2 1
28 28 H 1.08993 * 109.47411 * 185.00254 * 4 2 1
29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5
30 30 H 1.09001 * 109.47074 * 54.99862 * 13 2 1
31 31 H 1.09002 * 109.47150 * 174.99607 * 13 2 1
32 32 H 1.00907 * 110.99905 * 303.95595 * 14 13 2
33 33 H 1.08999 * 109.47308 * 300.00064 * 15 14 13
34 34 H 1.09002 * 109.47010 * 60.00170 * 15 14 13
35 35 H 0.96693 * 114.00076 * 300.00197 * 18 16 15
36 36 H 1.08001 * 122.54467 * 359.97438 * 20 19 16
37 37 H 1.08004 * 125.20567 * 180.20981 * 21 20 19
38 38 H 1.07998 * 125.20407 * 359.97438 * 23 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.6413 0.0571 -2.4767
6 1 1.0806 0.9745 -2.3756
7 6 1.9922 -0.4021 -3.7284
8 7 2.6796 -1.5166 -3.8511
9 14 1.4986 0.5629 -5.2497
10 1 1.9987 -0.1340 -6.4619
11 1 0.0184 0.6649 -5.3125
12 1 2.0863 1.9251 -5.1840
13 6 2.0399 -0.7213 1.2492
14 7 1.6514 0.0373 2.4456
15 6 2.1258 -0.6267 3.6671
16 6 1.7035 0.1914 4.8891
17 1 0.6166 0.2689 4.9165
18 8 2.2726 1.4996 4.8064
19 6 2.1907 -0.4895 6.1422
20 6 1.3950 -1.3492 6.8798
21 6 1.9811 -1.8711 7.9584
22 16 3.6242 -1.2578 8.0918
23 6 3.4193 -0.3051 6.6276
24 1 -0.3633 0.5140 -0.8899
25 1 -0.3634 -1.0275 0.0005
26 1 -0.3633 0.5138 0.8900
27 1 1.6053 -1.7198 -1.2952
28 1 3.1262 -0.7995 -1.2056
29 1 2.9362 -2.0177 -3.0611
30 1 1.6053 -1.7199 1.2950
31 1 3.1263 -0.7996 1.2055
32 1 1.9883 0.9872 2.3967
33 1 1.6921 -1.6248 3.7300
34 1 3.2127 -0.7039 3.6399
35 1 3.2391 1.5070 4.7782
36 1 0.3780 -1.5825 6.6011
37 1 1.5163 -2.5611 8.6471
38 1 4.1731 0.3315 6.1884
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000877049190.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:30
Heat of formation + Delta-G solvation = -61.435692 kcal
Electronic energy + Delta-G solvation = -17821.025376 eV
Core-core repulsion = 14981.265943 eV
Total energy + Delta-G solvation = -2839.759433 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 269.119 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.27294 -38.37722 -37.11657 -35.59747 -33.79854 -31.02959 -29.39420 -28.32393
-26.71024 -25.11666 -23.89744 -22.76375 -21.07524 -19.90621 -19.03615 -18.83412
-17.61628 -17.11732 -16.29544 -15.86440 -15.63823 -15.55035 -15.33999 -14.88452
-14.49400 -13.92981 -13.86745 -13.76630 -13.44870 -13.33155 -13.12676 -12.92136
-12.85370 -12.50010 -12.34225 -11.97036 -11.93542 -11.75668 -11.59644 -11.37338
-11.10863 -10.55462 -10.51919 -9.77277 -9.41710 -9.33503 -8.65623 -6.34606
0.03534 0.71509 1.02326 1.52763 1.61371 1.66394 1.80335 2.58051
3.10999 3.18568 3.47887 3.90007 4.00104 4.05041 4.10725 4.15564
4.25438 4.40184 4.47344 4.58996 4.67301 4.76534 4.79917 4.85740
4.89338 5.07239 5.10023 5.31769 5.36275 5.37880 5.48121 5.49712
5.64159 5.94427 6.09058 6.22250 6.42666 6.62249 6.70313 7.46351
8.75155
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.047258 B = 0.002799 C = 0.002766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 592.355316 B =10000.224311 C =10122.307711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.069 4.069
3 H 0.052 0.948
4 C 0.016 3.984
5 C -0.605 4.605
6 H 0.052 0.948
7 C -0.043 4.043
8 N -0.942 5.942
9 Si 1.116 2.884
10 H -0.285 1.285
11 H -0.269 1.269
12 H -0.269 1.269
13 C 0.078 3.922
14 N -0.681 5.681
15 C 0.038 3.962
16 C 0.180 3.820
17 H 0.111 0.889
18 O -0.563 6.563
19 C -0.141 4.141
20 C -0.141 4.141
21 C -0.213 4.213
22 S 0.105 5.895
23 C -0.214 4.214
24 H 0.036 0.964
25 H 0.035 0.965
26 H 0.069 0.931
27 H -0.014 1.014
28 H -0.018 1.018
29 H 0.254 0.746
30 H 0.062 0.938
31 H 0.018 0.982
32 H 0.347 0.653
33 H 0.079 0.921
34 H 0.034 0.966
35 H 0.382 0.618
36 H 0.153 0.847
37 H 0.186 0.814
38 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.145 1.598 25.709 25.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.088 4.088
3 H 0.071 0.929
4 C -0.021 4.021
5 C -0.643 4.643
6 H 0.071 0.929
7 C -0.240 4.240
8 N -0.580 5.580
9 Si 0.937 3.063
10 H -0.210 1.210
11 H -0.194 1.194
12 H -0.194 1.194
13 C -0.052 4.052
14 N -0.313 5.313
15 C -0.091 4.091
16 C 0.119 3.881
17 H 0.128 0.872
18 O -0.369 6.369
19 C -0.155 4.155
20 C -0.171 4.171
21 C -0.348 4.348
22 S 0.368 5.632
23 C -0.350 4.350
24 H 0.055 0.945
25 H 0.054 0.946
26 H 0.087 0.913
27 H 0.005 0.995
28 H 0.000 1.000
29 H 0.063 0.937
30 H 0.081 0.919
31 H 0.036 0.964
32 H 0.166 0.834
33 H 0.097 0.903
34 H 0.052 0.948
35 H 0.232 0.768
36 H 0.170 0.830
37 H 0.203 0.797
38 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges 0.185 1.275 25.186 25.219
hybrid contribution 0.554 -0.265 0.484 0.782
sum 0.739 1.010 25.671 25.701
Atomic orbital electron populations
1.21476 0.94519 1.00380 1.00613 1.20902 0.96861 0.98265 0.92728
0.92941 1.19189 0.93695 0.94904 0.94333 1.22448 1.38080 1.10390
0.93424 0.92937 1.27411 0.94041 0.97287 1.05223 1.70920 1.37940
1.16368 1.32809 0.82958 0.76973 0.74560 0.71825 1.21033 1.19404
1.19412 1.21853 0.96476 0.97358 0.89476 1.60354 1.64082 1.06122
1.00693 1.22602 0.97868 0.98843 0.89828 1.20402 0.98614 0.81130
0.88002 0.87170 1.86629 1.26228 1.27635 1.96439 1.19647 0.94590
1.01410 0.99807 1.20258 1.02233 0.98969 0.95681 1.25942 0.97822
1.07392 1.03643 1.84271 1.13150 1.41294 1.24440 1.25606 1.01001
1.07031 1.01343 0.94481 0.94595 0.91254 0.99522 0.99952 0.93691
0.91945 0.96421 0.83407 0.90293 0.94789 0.76850 0.82958 0.79694
0.80565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16
2 C -0.07 -2.84 2.48 -10.79 -0.03 -2.87 16
3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
4 C 0.02 0.86 3.76 29.85 0.11 0.97 16
5 C -0.61 -34.97 8.41 25.60 0.22 -34.76 16
6 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16
7 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16
8 N -0.94 -59.68 13.65 21.45 0.29 -59.39 16
9 Si 1.12 51.13 29.90 68.60 2.05 53.18 16
10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16
12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
13 C 0.08 2.65 5.07 86.30 0.44 3.08 16
14 N -0.68 -18.68 5.96 -513.90 -3.06 -21.74 16
15 C 0.04 0.85 5.37 86.30 0.46 1.31 16
16 C 0.18 3.47 3.57 29.85 0.11 3.57 16
17 H 0.11 2.26 8.11 -2.39 -0.02 2.24 16
18 O -0.56 -11.07 12.50 -148.98 -1.86 -12.93 16
19 C -0.14 -2.46 4.91 -20.92 -0.10 -2.57 16
20 C -0.14 -2.28 9.96 21.22 0.21 -2.06 16
21 C -0.21 -2.97 11.23 66.72 0.75 -2.22 16
22 S 0.10 1.48 23.34 -56.49 -1.32 0.16 16
23 C -0.21 -3.34 10.43 66.72 0.70 -2.64 16
24 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16
25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
26 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16
27 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16
28 H -0.02 -1.00 8.00 -2.39 -0.02 -1.02 16
29 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16
30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.35 9.35 8.12 -89.69 -0.73 8.62 16
33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
35 H 0.38 5.07 7.78 -74.06 -0.58 4.50 16
36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16
37 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16
38 H 0.18 2.05 7.14 -2.91 -0.02 2.02 16
Total: -1.00 -67.96 327.33 -0.08 -68.05
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: -0.15 Total: 16.69 kcal
Atomic # 6 Polarization: -47.98 SS G_CDS: 3.96 Total: -44.02 kcal
Atomic # 7 Polarization: -78.36 SS G_CDS: -2.77 Total: -81.13 kcal
Atomic # 8 Polarization: -11.07 SS G_CDS: -1.86 Total: -12.93 kcal
Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal
Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal
Total: -67.96 -0.08 -68.05 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877049190.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.611 kcal
(2) G-P(sol) polarization free energy of solvation -67.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds