Wall clock time and date at job start Mon Mar 30 2020 00:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.53000 * 109.47235 * 239.99971 * 2 1 3 5 5 C 1.50699 * 109.47342 * 64.99909 * 4 2 1 6 6 H 1.08006 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00249 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00160 * 9 7 5 11 11 H 1.48496 * 109.47319 * 210.00457 * 9 7 5 12 12 H 1.48505 * 109.46959 * 330.00077 * 9 7 5 13 13 C 1.52996 * 109.47056 * 119.99750 * 2 1 3 14 14 N 1.46899 * 109.47374 * 295.00039 * 13 2 1 15 15 C 1.46903 * 111.00461 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47311 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46922 * 305.00237 * 16 15 14 18 18 O 1.42905 * 109.46921 * 64.99969 * 16 15 14 19 19 C 1.50698 * 109.47342 * 185.00224 * 16 15 14 20 20 C 1.38423 * 122.54064 * 99.73488 * 19 16 15 21 21 C 1.33397 * 114.91793 * 179.76453 * 20 19 16 22 22 S 1.75883 * 109.59191 * 0.47784 * 21 20 19 23 23 C 1.33390 * 122.53571 * 280.02613 * 19 16 15 24 24 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47480 * 299.99994 * 1 2 3 26 26 H 1.08999 * 109.47025 * 60.00113 * 1 2 3 27 27 H 1.09002 * 109.47036 * 185.00423 * 4 2 1 28 28 H 1.09002 * 109.46730 * 304.99674 * 4 2 1 29 29 H 0.96994 * 120.00283 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46965 * 175.00323 * 13 2 1 31 31 H 1.09002 * 109.47331 * 55.00318 * 13 2 1 32 32 H 1.00907 * 111.00025 * 56.04212 * 14 13 2 33 33 H 1.09000 * 109.46601 * 59.99951 * 15 14 13 34 34 H 1.08994 * 109.46766 * 300.00312 * 15 14 13 35 35 H 0.96696 * 114.00036 * 60.00010 * 18 16 15 36 36 H 1.07993 * 122.53954 * 0.02562 * 20 19 16 37 37 H 1.07998 * 125.19936 * 180.21290 * 21 20 19 38 38 H 1.07996 * 125.20601 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3758 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0237 -3.1334 -4.0188 11 1 3.8110 -1.9192 -5.1196 12 1 3.8253 -2.1755 -2.7083 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 1.7034 0.1918 4.8892 17 1 2.0629 1.2153 4.7831 18 8 0.2779 0.1957 4.9902 19 6 2.2935 -0.4216 6.1328 20 6 3.4348 0.0751 6.7384 21 6 3.8209 -0.5813 7.8337 22 16 2.7157 -1.9142 8.1428 23 6 1.7587 -1.4877 6.7301 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1263 -0.7995 -1.2055 28 1 1.6054 -1.7198 -1.2950 29 1 1.8922 -0.0458 -5.6799 30 1 3.1263 -0.7993 1.2056 31 1 1.6054 -1.7198 1.2952 32 1 0.6528 0.1794 2.4753 33 1 3.2127 -0.7035 3.6401 34 1 1.6921 -1.6244 3.7301 35 1 -0.1119 -0.6839 5.0871 36 1 3.9696 0.9317 6.3558 37 1 4.6829 -0.3347 8.4358 38 1 0.8734 -2.0090 6.3974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877049192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:32 Heat of formation + Delta-G solvation = -32.012738 kcal Electronic energy + Delta-G solvation = -17841.456381 eV Core-core repulsion = 15002.972823 eV Total energy + Delta-G solvation = -2838.483558 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50248 -37.13355 -36.12546 -33.76545 -31.98903 -30.28705 -28.52751 -27.25477 -25.51859 -23.88431 -22.09752 -21.68771 -19.27465 -18.98566 -18.36805 -16.93102 -16.78943 -16.10409 -15.18827 -14.80317 -14.50038 -14.01834 -13.96549 -13.49092 -13.28490 -12.99885 -12.91250 -12.62897 -12.48551 -12.11522 -11.82104 -11.63548 -11.57355 -11.08491 -10.98824 -10.72111 -10.49898 -10.32042 -9.79681 -9.71390 -9.42864 -9.14382 -9.03963 -8.71239 -8.50134 -8.23621 -6.00214 -3.97068 0.65957 1.32134 1.64009 2.33044 3.32189 3.39789 3.43442 4.14867 4.22679 4.48258 4.60914 4.79141 4.92304 4.97881 5.10165 5.23982 5.33276 5.53122 5.56552 5.67486 5.72012 5.78852 5.97668 6.01039 6.15041 6.18852 6.39147 6.48138 6.77596 6.98395 7.08527 7.21381 7.33842 7.35411 7.49959 7.62917 7.84594 8.59494 9.05745 9.62691 11.13285 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.003023 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.641627 B = 9261.567219 C = 9624.788034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.686 5.686 15 C 0.035 3.965 16 C 0.167 3.833 17 H 0.118 0.882 18 O -0.551 6.551 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.211 4.211 22 S 0.095 5.905 23 C -0.207 4.207 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.346 0.654 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.369 0.631 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -4.529 26.684 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.066 4.066 14 N -0.319 5.319 15 C -0.096 4.096 16 C 0.105 3.895 17 H 0.136 0.864 18 O -0.355 6.355 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.347 4.347 22 S 0.359 5.641 23 C -0.343 4.343 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.216 0.784 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.438 -4.606 27.528 28.016 hybrid contribution 0.056 -1.234 -1.182 1.710 sum 2.494 -5.840 26.346 27.100 Atomic orbital electron populations 1.21753 0.96180 1.00461 1.00958 1.21030 0.95282 1.00224 0.92906 0.90956 1.19603 0.95909 0.95662 0.93454 1.21142 1.35243 1.09578 0.89079 0.90780 1.25029 0.95673 0.96946 0.95964 1.69912 1.47258 1.39307 0.97995 0.86804 0.80651 0.84332 0.77620 1.20458 1.21476 1.19101 1.22172 1.00238 0.94414 0.89817 1.60473 1.20589 1.49990 1.00809 1.22590 1.01548 0.94953 0.90480 1.20651 0.80096 1.00492 0.88231 0.86386 1.86668 1.19177 1.33753 1.95925 1.19665 0.97382 0.97121 0.99948 1.20089 0.97200 1.02134 0.95997 1.25630 1.05135 1.00902 1.03006 1.84280 1.21190 1.31187 1.27473 1.25339 1.05632 1.02356 1.00938 0.94166 0.94535 0.91313 0.96707 0.97298 0.92840 0.91567 0.95950 0.83377 0.90166 0.95342 0.78389 0.83794 0.81721 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.50 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.56 8.96 -34.44 -0.31 -14.86 16 6 H 0.07 2.26 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.34 16 9 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 1.02 5.14 -3.83 -0.02 1.00 16 14 N -0.69 -9.65 6.50 -113.78 -0.74 -10.39 16 15 C 0.03 0.39 5.34 -3.82 -0.02 0.37 16 16 C 0.17 1.69 3.53 -27.89 -0.10 1.60 16 17 H 0.12 1.28 8.09 -51.93 -0.42 0.86 16 18 O -0.55 -5.74 12.73 -35.23 -0.45 -6.19 16 19 C -0.13 -1.18 4.88 -106.25 -0.52 -1.70 16 20 C -0.12 -1.07 9.95 -41.21 -0.41 -1.48 16 21 C -0.21 -1.64 11.23 29.04 0.33 -1.31 16 22 S 0.09 0.73 23.34 -107.50 -2.51 -1.78 16 23 C -0.21 -1.72 10.45 29.04 0.30 -1.42 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.58 6.68 -51.93 -0.35 0.23 16 26 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 28 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.35 4.82 6.55 -39.29 -0.26 4.56 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.37 2.65 7.89 45.56 0.36 3.01 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 1.03 7.29 -52.49 -0.38 0.65 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -31.49 323.31 -8.67 -40.16 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.11 Total: 3.66 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.85 Total: -20.24 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.03 Total: -37.73 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.45 Total: -6.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.49 -8.67 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877049192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.145 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds