Wall clock time and date at job start Mon Mar 30 2020 00:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.53000 * 109.47235 * 239.99971 * 2 1 3 5 5 C 1.50699 * 109.47342 * 64.99909 * 4 2 1 6 6 H 1.08006 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00249 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00160 * 9 7 5 11 11 H 1.48496 * 109.47319 * 210.00457 * 9 7 5 12 12 H 1.48505 * 109.46959 * 330.00077 * 9 7 5 13 13 C 1.52996 * 109.47056 * 119.99750 * 2 1 3 14 14 N 1.46899 * 109.47374 * 295.00039 * 13 2 1 15 15 C 1.46903 * 111.00461 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47311 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46922 * 305.00237 * 16 15 14 18 18 O 1.42905 * 109.46921 * 64.99969 * 16 15 14 19 19 C 1.50698 * 109.47342 * 185.00224 * 16 15 14 20 20 C 1.38423 * 122.54064 * 99.73488 * 19 16 15 21 21 C 1.33397 * 114.91793 * 179.76453 * 20 19 16 22 22 S 1.75883 * 109.59191 * 0.47784 * 21 20 19 23 23 C 1.33390 * 122.53571 * 280.02613 * 19 16 15 24 24 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47480 * 299.99994 * 1 2 3 26 26 H 1.08999 * 109.47025 * 60.00113 * 1 2 3 27 27 H 1.09002 * 109.47036 * 185.00423 * 4 2 1 28 28 H 1.09002 * 109.46730 * 304.99674 * 4 2 1 29 29 H 0.96994 * 120.00283 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46965 * 175.00323 * 13 2 1 31 31 H 1.09002 * 109.47331 * 55.00318 * 13 2 1 32 32 H 1.00907 * 111.00025 * 56.04212 * 14 13 2 33 33 H 1.09000 * 109.46601 * 59.99951 * 15 14 13 34 34 H 1.08994 * 109.46766 * 300.00312 * 15 14 13 35 35 H 0.96696 * 114.00036 * 60.00010 * 18 16 15 36 36 H 1.07993 * 122.53954 * 0.02562 * 20 19 16 37 37 H 1.07998 * 125.19936 * 180.21290 * 21 20 19 38 38 H 1.07996 * 125.20601 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3758 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0237 -3.1334 -4.0188 11 1 3.8110 -1.9192 -5.1196 12 1 3.8253 -2.1755 -2.7083 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 1.7034 0.1918 4.8892 17 1 2.0629 1.2153 4.7831 18 8 0.2779 0.1957 4.9902 19 6 2.2935 -0.4216 6.1328 20 6 3.4348 0.0751 6.7384 21 6 3.8209 -0.5813 7.8337 22 16 2.7157 -1.9142 8.1428 23 6 1.7587 -1.4877 6.7301 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1263 -0.7995 -1.2055 28 1 1.6054 -1.7198 -1.2950 29 1 1.8922 -0.0458 -5.6799 30 1 3.1263 -0.7993 1.2056 31 1 1.6054 -1.7198 1.2952 32 1 0.6528 0.1794 2.4753 33 1 3.2127 -0.7035 3.6401 34 1 1.6921 -1.6244 3.7301 35 1 -0.1119 -0.6839 5.0871 36 1 3.9696 0.9317 6.3558 37 1 4.6829 -0.3347 8.4358 38 1 0.8734 -2.0090 6.3974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877049192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:32 Heat of formation + Delta-G solvation = -54.487374 kcal Electronic energy + Delta-G solvation = -17842.430954 eV Core-core repulsion = 15002.972823 eV Total energy + Delta-G solvation = -2839.458132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23399 -38.34852 -37.05222 -35.32070 -33.87666 -31.08820 -29.77621 -28.73160 -26.79091 -24.98469 -23.52931 -22.67812 -20.67245 -19.88278 -18.99127 -18.94744 -17.55611 -17.24957 -16.45228 -15.97977 -15.70075 -15.50408 -15.06003 -14.70016 -14.42064 -14.18541 -13.84843 -13.74336 -13.58422 -13.40117 -13.23832 -12.91303 -12.77278 -12.48849 -12.33773 -12.08085 -11.75250 -11.71431 -11.48241 -11.38934 -11.09512 -10.88990 -10.73153 -9.74694 -9.36557 -9.29367 -8.25358 -6.27837 0.05975 0.74206 1.04672 1.36017 1.38287 1.50026 1.69058 2.38356 3.09788 3.17858 3.52646 3.94216 4.06152 4.09959 4.17618 4.24435 4.26150 4.42367 4.49547 4.62164 4.73560 4.77181 4.83309 4.89327 5.00549 5.05172 5.12453 5.30459 5.38315 5.40287 5.52888 5.55529 5.69843 5.73867 6.09556 6.35621 6.51114 6.75144 6.79972 7.35691 8.91551 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.003023 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.641627 B = 9261.567219 C = 9624.788034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.075 3.925 14 N -0.692 5.692 15 C 0.039 3.961 16 C 0.178 3.822 17 H 0.107 0.893 18 O -0.564 6.564 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.214 4.214 22 S 0.105 5.895 23 C -0.212 4.212 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.348 0.652 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.383 0.617 36 H 0.151 0.849 37 H 0.185 0.815 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -6.539 28.817 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.170 1.170 13 C -0.054 4.054 14 N -0.325 5.325 15 C -0.091 4.091 16 C 0.116 3.884 17 H 0.125 0.875 18 O -0.371 6.371 19 C -0.154 4.154 20 C -0.172 4.172 21 C -0.349 4.349 22 S 0.369 5.631 23 C -0.348 4.348 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.168 0.832 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.232 0.768 36 H 0.168 0.832 37 H 0.202 0.798 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.105 -6.620 29.695 30.582 hybrid contribution -0.212 -0.528 -1.791 1.879 sum 2.893 -7.148 27.904 28.950 Atomic orbital electron populations 1.21658 0.95339 1.00993 1.00642 1.20896 0.96001 0.99036 0.93187 0.92998 1.19556 0.95979 0.95638 0.93199 1.21467 1.34307 1.08678 0.91280 0.94784 1.26018 0.97022 1.01051 0.95505 1.70074 1.49151 1.41667 0.98719 0.85672 0.79340 0.79451 0.78249 1.19241 1.21215 1.17035 1.21892 1.00044 0.94413 0.89016 1.60388 1.20784 1.50266 1.01085 1.22600 1.01410 0.95494 0.89549 1.20419 0.80073 0.99719 0.88220 0.87546 1.86636 1.19308 1.35211 1.95933 1.19619 0.97968 0.97803 0.99972 1.20267 0.97497 1.02823 0.96601 1.25929 1.05596 1.00547 1.02822 1.84265 1.20897 1.30949 1.26986 1.25622 1.06116 1.02100 1.00937 0.93128 0.91758 0.94717 0.96553 0.96451 0.92682 0.91642 0.94898 0.83196 0.90349 0.94137 0.76764 0.83175 0.79818 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.77 71.98 0.63 -4.07 16 2 C -0.07 -2.81 2.55 -10.80 -0.03 -2.84 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 5 C -0.52 -30.17 8.96 25.60 0.23 -29.94 16 6 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 13 C 0.08 2.31 5.14 86.30 0.44 2.75 16 14 N -0.69 -18.09 6.50 -513.90 -3.34 -21.43 16 15 C 0.04 0.80 5.34 86.30 0.46 1.26 16 16 C 0.18 3.30 3.53 29.85 0.11 3.40 16 17 H 0.11 2.21 8.09 -2.39 -0.02 2.19 16 18 O -0.56 -10.64 12.73 -148.98 -1.90 -12.54 16 19 C -0.14 -2.34 4.88 -20.92 -0.10 -2.44 16 20 C -0.14 -2.24 9.95 21.22 0.21 -2.03 16 21 C -0.21 -2.89 11.23 66.72 0.75 -2.14 16 22 S 0.11 1.40 23.34 -56.49 -1.32 0.08 16 23 C -0.21 -3.05 10.45 66.72 0.70 -2.35 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.96 6.68 -2.39 -0.02 1.94 16 26 H 0.03 1.47 6.95 -2.39 -0.02 1.46 16 27 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 28 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.35 8.90 6.55 -89.69 -0.59 8.31 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.38 4.55 7.89 -74.06 -0.58 3.97 16 36 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.18 1.78 7.29 -2.91 -0.02 1.76 16 Total: -1.00 -68.36 323.31 -0.57 -68.93 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.17 Total: 16.96 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.97 Total: -38.09 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.04 Total: -82.00 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.90 Total: -12.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.32 Total: 0.08 kcal Total: -68.36 -0.57 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877049192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.444 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds