Wall clock time and date at job start Mon Mar 30 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 116.99849 * 2 1 4 4 C 1.38725 * 120.01482 * 0.02562 * 3 2 1 5 5 C 1.38405 * 120.02978 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.97046 * 179.72570 * 5 4 3 7 7 C 1.38402 * 120.05896 * 359.97438 * 5 4 3 8 8 C 1.38734 * 120.03161 * 0.02562 * 7 5 4 9 9 O 1.35892 * 120.01856 * 180.02562 * 8 7 5 10 10 C 1.42895 * 116.99800 * 359.97438 * 9 8 7 11 11 C 1.38651 * 120.01245 * 180.02562 * 3 2 1 12 12 C 1.50700 * 120.02961 * 0.02562 * 11 3 2 13 13 N 1.46896 * 109.47299 * 89.99978 * 12 11 3 14 14 C 1.46897 * 110.99979 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47357 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00462 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00159 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99804 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47316 * 89.99755 * 19 17 15 21 21 H 1.48501 * 109.46988 * 209.99781 * 19 17 15 22 22 H 1.48502 * 109.47093 * 330.00124 * 19 17 15 23 23 H 1.09002 * 109.46571 * 299.99166 * 1 2 3 24 24 H 1.08993 * 109.47075 * 59.99730 * 1 2 3 25 25 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.98776 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.98859 * 179.97438 * 7 5 4 28 28 H 1.09010 * 109.47079 * 299.99827 * 10 9 8 29 29 H 1.08999 * 109.47465 * 59.99560 * 10 9 8 30 30 H 1.09001 * 109.47098 * 179.97438 * 10 9 8 31 31 H 1.09008 * 109.46703 * 209.99807 * 12 11 3 32 32 H 1.08994 * 109.46995 * 329.99657 * 12 11 3 33 33 H 1.00903 * 111.00361 * 56.04570 * 13 12 11 34 34 H 1.08994 * 109.47445 * 300.00007 * 14 13 12 35 35 H 1.09002 * 109.47252 * 60.00510 * 14 13 12 36 36 H 0.97001 * 119.99643 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3745 0.0005 5 6 1.9187 3.6078 0.0000 6 9 1.1820 4.7403 -0.0051 7 6 3.3007 3.6821 -0.0005 8 6 4.0585 2.5200 -0.0011 9 8 5.4154 2.5932 -0.0011 10 6 5.9946 3.8995 -0.0011 11 6 3.4306 1.2837 -0.0005 12 6 4.2523 0.0205 -0.0017 13 7 4.5187 -0.3891 -1.3870 14 6 5.3199 -1.6197 -1.4273 15 6 5.5720 -2.0084 -2.8614 16 1 5.1768 -1.4016 -3.6627 17 6 6.3079 -3.1379 -3.1504 18 7 6.5274 -3.4773 -4.4019 19 14 6.9919 -4.1870 -1.7644 20 1 6.0001 -5.2293 -1.3966 21 1 8.2506 -4.8367 -2.2103 22 1 7.2687 -3.3289 -0.5844 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2122 2.3180 0.0014 27 1 3.7896 4.6452 -0.0014 28 1 5.6721 4.4400 -0.8912 29 1 5.6721 4.4400 0.8888 30 1 7.0813 3.8152 -0.0006 31 1 5.1967 0.2010 0.5119 32 1 3.7046 -0.7696 0.5119 33 1 4.9687 0.3520 -1.9031 34 1 6.2716 -1.4503 -0.9238 35 1 4.7800 -2.4215 -0.9236 36 1 7.0448 -4.2722 -4.6052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877484228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:22 Heat of formation + Delta-G solvation = -88.571076 kcal Electronic energy + Delta-G solvation = -20482.627685 eV Core-core repulsion = 17075.478398 eV Total energy + Delta-G solvation = -3407.149288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.04432 -40.59043 -39.06266 -36.36874 -35.28726 -32.54861 -30.93377 -29.79307 -27.95731 -27.60885 -26.53912 -24.23136 -22.15872 -21.46505 -20.93226 -18.89395 -17.53609 -16.80004 -16.46186 -16.22149 -16.09514 -15.67009 -15.55185 -15.39302 -14.71470 -14.52549 -14.16722 -13.99766 -13.59824 -13.04388 -12.62014 -12.47895 -12.23133 -11.94373 -11.70982 -11.62650 -11.58632 -11.33586 -10.98708 -10.54434 -10.53227 -10.37881 -9.78899 -9.20909 -8.51652 -8.35219 -8.23512 -7.29077 -5.98691 -3.95644 1.10562 1.26481 2.82415 3.34695 3.41095 3.45014 3.49825 3.59489 4.08936 4.48972 4.79287 4.80927 4.83395 4.88006 5.00901 5.05252 5.09650 5.14323 5.34390 5.38299 5.46703 5.52668 5.75735 5.86233 5.92569 5.99874 6.27747 6.45259 6.46461 6.89729 7.13763 7.22208 7.33948 7.70245 8.00421 8.47315 8.74791 9.10116 9.63870 11.14780 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.005039 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.831860 B = 5555.458965 C = 6400.446465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.289 6.289 3 C 0.213 3.787 4 C -0.284 4.284 5 C 0.170 3.830 6 F -0.138 7.138 7 C -0.283 4.283 8 C 0.196 3.804 9 O -0.300 6.300 10 C 0.026 3.974 11 C -0.146 4.146 12 C 0.112 3.888 13 N -0.670 5.670 14 C 0.165 3.835 15 C -0.511 4.511 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.335 0.665 34 H -0.016 1.016 35 H 0.022 0.978 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 15.000 12.424 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.200 6.200 3 C 0.165 3.835 4 C -0.303 4.303 5 C 0.150 3.850 6 F -0.116 7.116 7 C -0.303 4.303 8 C 0.149 3.851 9 O -0.212 6.212 10 C -0.069 4.069 11 C -0.148 4.148 12 C -0.017 4.017 13 N -0.301 5.301 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.192 1.192 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.002 0.998 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.172 14.195 12.244 20.870 hybrid contribution 0.784 0.422 0.829 1.216 sum -8.388 14.617 13.073 21.328 Atomic orbital electron populations 1.23139 0.78322 1.04347 1.01213 1.86249 1.21183 1.25372 1.87190 1.18017 0.90588 0.83886 0.91011 1.20976 1.01037 0.90935 1.17395 1.16888 0.88291 0.81397 0.98441 1.91488 1.77117 1.49420 1.93603 1.20922 0.92815 0.99013 1.17518 1.18105 0.82655 0.91954 0.92389 1.86172 1.16473 1.30807 1.87730 1.23137 0.99451 0.82925 1.01422 1.18517 0.90875 0.94126 1.11318 1.20495 0.96281 0.92030 0.92871 1.60553 1.52581 1.07427 1.09507 1.19994 0.90135 0.88176 0.98012 1.21076 1.32556 1.10230 0.91089 0.90370 1.24897 0.95857 0.97273 0.95352 1.69908 1.40728 1.26056 1.17548 0.86823 0.78721 0.80937 0.83047 1.20169 1.21323 1.19185 0.92776 0.92358 0.87842 0.84208 0.84275 0.92282 0.92603 0.87855 0.94861 0.90502 0.84835 0.99837 0.95969 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.29 -4.33 9.54 -19.41 -0.19 -4.52 16 3 C 0.21 3.21 6.65 -39.25 -0.26 2.95 16 4 C -0.28 -3.68 9.01 -39.34 -0.35 -4.03 16 5 C 0.17 2.21 7.29 -39.46 -0.29 1.92 16 6 F -0.14 -1.72 17.27 2.25 0.04 -1.69 16 7 C -0.28 -3.60 9.01 -39.34 -0.35 -3.96 16 8 C 0.20 2.88 6.66 -39.24 -0.26 2.62 16 9 O -0.30 -4.24 9.54 -19.40 -0.19 -4.42 16 10 C 0.03 0.24 9.81 101.05 0.99 1.23 16 11 C -0.15 -2.41 5.42 -104.31 -0.57 -2.97 16 12 C 0.11 2.11 5.37 -4.98 -0.03 2.09 16 13 N -0.67 -14.99 6.48 -116.34 -0.75 -15.75 16 14 C 0.16 4.20 4.51 -4.98 -0.02 4.18 16 15 C -0.51 -15.13 9.87 -34.44 -0.34 -15.47 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 19 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 23 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.14 1.47 6.29 -52.49 -0.33 1.14 16 27 H 0.14 1.43 6.29 -52.48 -0.33 1.10 16 28 H 0.06 0.49 7.66 -51.92 -0.40 0.10 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.62 7.53 -51.92 -0.39 0.23 16 32 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16 33 H 0.33 7.43 8.71 -39.29 -0.34 7.09 16 34 H -0.02 -0.41 7.20 -51.93 -0.37 -0.78 16 35 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -33.38 308.29 -5.50 -38.88 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.58 Total: 1.27 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.59 Total: -8.30 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.02 Total: -43.30 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.37 Total: -8.94 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.38 -5.50 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds