Wall clock time and date at job start Mon Mar 30 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 116.99849 * 2 1 4 4 C 1.38725 * 120.01482 * 0.02562 * 3 2 1 5 5 C 1.38405 * 120.02978 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.97046 * 179.72570 * 5 4 3 7 7 C 1.38402 * 120.05896 * 359.97438 * 5 4 3 8 8 C 1.38734 * 120.03161 * 0.02562 * 7 5 4 9 9 O 1.35892 * 120.01856 * 180.02562 * 8 7 5 10 10 C 1.42895 * 116.99800 * 359.97438 * 9 8 7 11 11 C 1.38651 * 120.01245 * 180.02562 * 3 2 1 12 12 C 1.50700 * 120.02961 * 0.02562 * 11 3 2 13 13 N 1.46896 * 109.47299 * 89.99978 * 12 11 3 14 14 C 1.46897 * 110.99979 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47357 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00462 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00159 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99804 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47316 * 89.99755 * 19 17 15 21 21 H 1.48501 * 109.46988 * 209.99781 * 19 17 15 22 22 H 1.48502 * 109.47093 * 330.00124 * 19 17 15 23 23 H 1.09002 * 109.46571 * 299.99166 * 1 2 3 24 24 H 1.08993 * 109.47075 * 59.99730 * 1 2 3 25 25 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.98776 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.98859 * 179.97438 * 7 5 4 28 28 H 1.09010 * 109.47079 * 299.99827 * 10 9 8 29 29 H 1.08999 * 109.47465 * 59.99560 * 10 9 8 30 30 H 1.09001 * 109.47098 * 179.97438 * 10 9 8 31 31 H 1.09008 * 109.46703 * 209.99807 * 12 11 3 32 32 H 1.08994 * 109.46995 * 329.99657 * 12 11 3 33 33 H 1.00903 * 111.00361 * 56.04570 * 13 12 11 34 34 H 1.08994 * 109.47445 * 300.00007 * 14 13 12 35 35 H 1.09002 * 109.47252 * 60.00510 * 14 13 12 36 36 H 0.97001 * 119.99643 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3745 0.0005 5 6 1.9187 3.6078 0.0000 6 9 1.1820 4.7403 -0.0051 7 6 3.3007 3.6821 -0.0005 8 6 4.0585 2.5200 -0.0011 9 8 5.4154 2.5932 -0.0011 10 6 5.9946 3.8995 -0.0011 11 6 3.4306 1.2837 -0.0005 12 6 4.2523 0.0205 -0.0017 13 7 4.5187 -0.3891 -1.3870 14 6 5.3199 -1.6197 -1.4273 15 6 5.5720 -2.0084 -2.8614 16 1 5.1768 -1.4016 -3.6627 17 6 6.3079 -3.1379 -3.1504 18 7 6.5274 -3.4773 -4.4019 19 14 6.9919 -4.1870 -1.7644 20 1 6.0001 -5.2293 -1.3966 21 1 8.2506 -4.8367 -2.2103 22 1 7.2687 -3.3289 -0.5844 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2122 2.3180 0.0014 27 1 3.7896 4.6452 -0.0014 28 1 5.6721 4.4400 -0.8912 29 1 5.6721 4.4400 0.8888 30 1 7.0813 3.8152 -0.0006 31 1 5.1967 0.2010 0.5119 32 1 3.7046 -0.7696 0.5119 33 1 4.9687 0.3520 -1.9031 34 1 6.2716 -1.4503 -0.9238 35 1 4.7800 -2.4215 -0.9236 36 1 7.0448 -4.2722 -4.6052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:22 Heat of formation + Delta-G solvation = -112.998859 kcal Electronic energy + Delta-G solvation = -20483.686954 eV Core-core repulsion = 17075.478398 eV Total energy + Delta-G solvation = -3408.208556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.04215 -41.63536 -40.05649 -37.53058 -36.88017 -34.64221 -32.41450 -30.79293 -29.31811 -28.77661 -27.55853 -25.75248 -23.18586 -23.09518 -22.52699 -19.89858 -18.97806 -18.56685 -17.47168 -17.23731 -17.05695 -17.04684 -16.44743 -16.37068 -16.29665 -15.85937 -15.47447 -15.44061 -15.20887 -14.52438 -14.10253 -13.90593 -13.41296 -13.24710 -13.01042 -12.73954 -12.61240 -12.47742 -12.41424 -12.37109 -11.92843 -11.79639 -11.48401 -11.46182 -10.79154 -9.42074 -9.33986 -9.04460 -8.28518 -6.32813 0.02314 0.23623 1.36415 1.38071 1.49813 1.89537 2.36050 2.41736 2.68070 3.05387 3.07195 3.64140 3.78455 3.87010 3.89580 3.92427 4.29335 4.33769 4.39645 4.42510 4.49252 4.58243 4.72284 4.75450 4.81784 4.85743 4.93904 5.00880 5.11422 5.24790 5.42156 5.53479 5.95918 6.26929 6.34907 6.58413 6.66038 6.76811 7.31972 8.88357 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.005039 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.831860 B = 5555.458965 C = 6400.446465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.318 6.318 3 C 0.206 3.794 4 C -0.281 4.281 5 C 0.171 3.829 6 F -0.132 7.132 7 C -0.279 4.279 8 C 0.195 3.805 9 O -0.324 6.324 10 C 0.015 3.985 11 C -0.179 4.179 12 C 0.122 3.878 13 N -0.677 5.677 14 C 0.177 3.823 15 C -0.526 4.526 16 H 0.035 0.965 17 C 0.009 3.991 18 N -0.948 5.948 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.252 1.252 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.116 0.884 26 H 0.164 0.836 27 H 0.165 0.835 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.332 0.668 34 H -0.014 1.014 35 H 0.024 0.976 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 15.879 14.327 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.230 6.230 3 C 0.158 3.842 4 C -0.300 4.300 5 C 0.152 3.848 6 F -0.111 7.111 7 C -0.298 4.298 8 C 0.147 3.853 9 O -0.237 6.237 10 C -0.079 4.079 11 C -0.181 4.181 12 C -0.007 4.007 13 N -0.308 5.308 14 C 0.048 3.952 15 C -0.565 4.565 16 H 0.053 0.947 17 C -0.188 4.188 18 N -0.588 5.588 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.176 1.176 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.182 0.818 27 H 0.183 0.817 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.004 0.996 35 H 0.042 0.958 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.602 15.102 14.158 22.819 hybrid contribution 0.843 0.263 0.170 0.899 sum -8.759 15.365 14.329 22.762 Atomic orbital electron populations 1.23449 0.75995 1.05782 1.02667 1.86204 1.23756 1.25799 1.87227 1.18117 0.90379 0.84645 0.91039 1.21150 1.02169 0.90165 1.16517 1.16988 0.88516 0.81557 0.97786 1.91506 1.76997 1.49103 1.93478 1.21118 0.92747 0.99462 1.16482 1.18151 0.83155 0.91906 0.92040 1.86141 1.16292 1.33639 1.87619 1.23465 1.00175 0.81387 1.02852 1.18484 0.91529 0.93710 1.14381 1.20365 0.96623 0.93360 0.90356 1.60470 1.51615 1.06512 1.12165 1.19739 0.90622 0.89672 0.95148 1.21306 1.32734 1.10182 0.92232 0.94673 1.25866 0.95993 0.98668 0.98294 1.70056 1.41687 1.26973 1.20115 0.85645 0.78255 0.79028 0.79573 1.18937 1.20384 1.17603 0.90509 0.91606 0.86588 0.81830 0.81731 0.91333 0.90582 0.86449 0.94914 0.90981 0.85111 0.99649 0.95821 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -9.35 9.54 -92.36 -0.88 -10.23 16 3 C 0.21 6.06 6.65 22.49 0.15 6.21 16 4 C -0.28 -6.72 9.01 22.43 0.20 -6.52 16 5 C 0.17 4.06 7.29 22.35 0.16 4.22 16 6 F -0.13 -2.95 17.27 44.97 0.78 -2.17 16 7 C -0.28 -6.50 9.01 22.43 0.20 -6.30 16 8 C 0.19 5.52 6.66 22.49 0.15 5.67 16 9 O -0.32 -8.87 9.54 -92.34 -0.88 -9.75 16 10 C 0.02 0.25 9.81 113.37 1.11 1.36 16 11 C -0.18 -5.84 5.42 -19.67 -0.11 -5.94 16 12 C 0.12 4.60 5.37 85.56 0.46 5.06 16 13 N -0.68 -30.84 6.48 -522.00 -3.38 -34.22 16 14 C 0.18 9.06 4.51 85.56 0.39 9.45 16 15 C -0.53 -32.00 9.87 25.60 0.25 -31.75 16 16 H 0.03 2.37 8.06 -2.91 -0.02 2.34 16 17 C 0.01 0.55 5.47 84.65 0.46 1.01 16 18 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 19 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 20 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 23 H 0.08 1.04 7.66 -2.39 -0.02 1.02 16 24 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 25 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.16 3.00 6.29 -2.91 -0.02 2.98 16 27 H 0.17 2.87 6.29 -2.91 -0.02 2.85 16 28 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 29 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.22 7.53 -2.38 -0.02 1.21 16 32 H 0.07 2.74 7.53 -2.39 -0.02 2.72 16 33 H 0.33 15.20 8.71 -89.69 -0.78 14.42 16 34 H -0.01 -0.71 7.20 -2.39 -0.02 -0.73 16 35 H 0.02 1.21 7.57 -2.39 -0.02 1.19 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -72.98 308.29 2.63 -70.35 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.27 Total: 15.22 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.55 Total: -16.15 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.08 Total: -94.57 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.76 Total: -19.98 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -72.98 2.63 -70.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.646 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds