Wall clock time and date at job start Mon Mar 30 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99514 * 2 1 4 4 H 1.48504 * 109.47012 * 239.99777 * 3 2 1 5 5 H 1.48498 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47138 * 120.00204 * 3 2 1 7 7 C 1.37872 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47068 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47412 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99627 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00165 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99860 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47076 * 179.97438 * 14 13 11 16 16 C 1.39870 * 126.04185 * 269.97636 * 15 14 13 17 17 N 1.30839 * 108.19862 * 180.02562 * 16 15 14 18 18 N 1.40079 * 108.20849 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.03442 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47267 * 304.99629 * 19 18 17 21 21 F 1.39895 * 109.47055 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92564 * 0.02562 * 18 17 16 23 23 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47383 * 60.00314 * 9 7 2 25 25 H 1.09004 * 109.46963 * 299.99638 * 9 7 2 26 26 H 1.09009 * 109.47244 * 59.99567 * 10 9 7 27 27 H 1.09005 * 109.47362 * 300.00422 * 10 9 7 28 28 H 0.97000 * 120.00090 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47315 * 59.99738 * 14 13 11 30 30 H 1.09005 * 109.47291 * 300.00272 * 14 13 11 31 31 H 1.07997 * 125.89658 * 359.97438 * 16 15 14 32 32 H 1.08994 * 109.47186 * 64.99894 * 19 18 17 33 33 H 1.09001 * 109.46653 * 185.00231 * 19 18 17 34 34 H 1.08994 * 109.47234 * 300.00235 * 20 19 18 35 35 H 1.09007 * 109.46596 * 60.00293 * 20 19 18 36 36 H 1.08007 * 126.12251 * 180.26869 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4921 -4.9671 0.0012 12 8 0.2792 -4.9672 0.0011 13 7 2.1660 -6.1343 0.0018 14 6 1.4336 -7.4030 0.0019 15 6 2.4129 -8.5484 0.0020 16 6 2.9474 -9.1743 -1.1289 17 7 3.7565 -10.1211 -0.7279 18 7 3.7628 -10.1273 0.6728 19 6 4.5358 -11.0323 1.5272 20 6 4.2189 -12.4817 1.1533 21 9 4.9574 -13.3458 1.9687 22 6 2.9304 -9.1532 1.0963 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 3.1360 -6.1343 0.0022 29 1 0.8073 -7.4611 -0.8883 30 1 0.8065 -7.4605 0.8916 31 1 2.7293 -8.9204 -2.1557 32 1 5.6001 -10.8449 1.3857 33 1 4.2721 -10.8604 2.5708 34 1 3.1545 -12.6690 1.2947 35 1 4.4826 -12.6535 0.1096 36 1 2.7190 -8.8987 2.1244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888329252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:16 Heat of formation + Delta-G solvation = -24.010420 kcal Electronic energy + Delta-G solvation = -19081.614976 eV Core-core repulsion = 15709.557999 eV Total energy + Delta-G solvation = -3372.056977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.27181 -41.62898 -38.98187 -35.24346 -33.97959 -33.40562 -31.24725 -30.60625 -29.65193 -26.40118 -24.88313 -24.07137 -21.56497 -21.22765 -20.57009 -19.56347 -17.74157 -16.96672 -16.82831 -16.14484 -15.87050 -15.54251 -15.40882 -15.07971 -14.73487 -14.39905 -14.27136 -13.76309 -13.44353 -13.10785 -12.83111 -12.50742 -12.16590 -12.02945 -11.83659 -11.51713 -11.13294 -10.91736 -10.87529 -10.60179 -9.91656 -9.83010 -9.63597 -9.31612 -9.08840 -8.70641 -8.67226 -8.29289 -5.93738 -3.98061 1.44649 1.95284 2.35882 3.32071 3.35839 3.40417 3.42095 3.65661 3.87073 3.99893 4.34195 4.38858 4.49714 4.50891 4.61262 4.84307 4.95579 5.12045 5.25900 5.40943 5.42352 5.59055 5.91830 5.95583 6.26449 6.27777 6.29412 6.53793 6.79363 6.94126 7.28727 7.76849 7.89972 7.97492 8.10305 8.41716 8.84569 9.10720 9.65229 11.17148 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.046268 B = 0.002545 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.018320 B =10998.486546 C =11257.990593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.537 6.537 13 N -0.741 5.741 14 C 0.198 3.802 15 C -0.249 4.249 16 C 0.071 3.929 17 N -0.299 5.299 18 N -0.378 5.378 19 C 0.107 3.893 20 C 0.053 3.947 21 F -0.208 7.208 22 C 0.078 3.922 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.397 0.603 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.187 0.813 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 -24.375 2.666 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.396 5.396 14 C 0.073 3.927 15 C -0.260 4.260 16 C -0.117 4.117 17 N -0.119 5.119 18 N -0.160 5.160 19 C -0.016 4.016 20 C -0.003 4.003 21 F -0.189 7.189 22 C -0.068 4.068 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.230 0.770 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.204 0.796 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.220 -25.306 2.424 27.042 hybrid contribution 0.469 1.487 0.342 1.596 sum 9.689 -23.819 2.766 25.863 Atomic orbital electron populations 1.69990 1.06034 1.26659 1.50181 1.25027 0.94831 0.99198 0.95356 0.86654 0.79538 0.83215 0.78521 1.20267 1.21305 1.20284 1.21198 0.92884 0.91078 1.51395 0.92693 1.18894 0.93190 0.89363 0.98609 1.21859 1.00685 0.92064 1.02397 1.21548 0.88630 0.85644 0.74464 1.90670 1.14470 1.87678 1.48397 1.46357 1.10079 1.05280 1.77849 1.19352 0.91355 0.79466 1.02508 1.20201 1.08810 1.04996 0.92041 1.23939 0.94372 0.93163 1.00180 1.77374 1.23276 1.23040 0.88192 1.48356 1.35489 1.27205 1.04964 1.22194 0.97307 0.88259 0.93824 1.22172 0.96341 0.86579 0.95212 1.92801 1.79554 1.71127 1.75461 1.22493 0.93021 0.90863 1.00463 0.92914 0.95816 0.95839 0.90389 0.90311 0.76990 0.90987 0.91345 0.79577 0.88460 0.87351 0.90046 0.89100 0.80485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.63 7.83 -10.99 -0.09 9.55 16 12 O -0.54 -12.53 15.98 5.55 0.09 -12.44 16 13 N -0.74 -10.09 5.55 -61.47 -0.34 -10.43 16 14 C 0.20 2.33 6.15 -5.20 -0.03 2.30 16 15 C -0.25 -2.37 5.47 -105.05 -0.57 -2.94 16 16 C 0.07 0.67 11.96 -17.36 -0.21 0.46 16 17 N -0.30 -3.00 12.42 30.62 0.38 -2.62 16 18 N -0.38 -3.03 3.68 -61.36 -0.23 -3.26 16 19 C 0.11 0.55 6.96 -4.04 -0.03 0.52 16 20 C 0.05 0.29 7.74 37.16 0.29 0.58 16 21 F -0.21 -1.52 17.36 2.25 0.04 -1.48 16 22 C 0.08 0.62 11.36 -17.22 -0.20 0.42 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.40 4.48 8.46 -40.82 -0.35 4.13 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.19 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.11 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -35.62 322.97 -5.95 -41.57 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.95 Total: -1.38 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.52 Total: -4.75 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.55 Total: -43.08 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.62 -5.95 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888329252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.559 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds