Wall clock time and date at job start Mon Mar 30 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99514 * 2 1 4 4 H 1.48504 * 109.47012 * 239.99777 * 3 2 1 5 5 H 1.48498 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47138 * 120.00204 * 3 2 1 7 7 C 1.37872 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47068 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47412 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99627 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00165 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99860 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47076 * 179.97438 * 14 13 11 16 16 C 1.39870 * 126.04185 * 269.97636 * 15 14 13 17 17 N 1.30839 * 108.19862 * 180.02562 * 16 15 14 18 18 N 1.40079 * 108.20849 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.03442 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47267 * 304.99629 * 19 18 17 21 21 F 1.39895 * 109.47055 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92564 * 0.02562 * 18 17 16 23 23 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47383 * 60.00314 * 9 7 2 25 25 H 1.09004 * 109.46963 * 299.99638 * 9 7 2 26 26 H 1.09009 * 109.47244 * 59.99567 * 10 9 7 27 27 H 1.09005 * 109.47362 * 300.00422 * 10 9 7 28 28 H 0.97000 * 120.00090 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47315 * 59.99738 * 14 13 11 30 30 H 1.09005 * 109.47291 * 300.00272 * 14 13 11 31 31 H 1.07997 * 125.89658 * 359.97438 * 16 15 14 32 32 H 1.08994 * 109.47186 * 64.99894 * 19 18 17 33 33 H 1.09001 * 109.46653 * 185.00231 * 19 18 17 34 34 H 1.08994 * 109.47234 * 300.00235 * 20 19 18 35 35 H 1.09007 * 109.46596 * 60.00293 * 20 19 18 36 36 H 1.08007 * 126.12251 * 180.26869 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4921 -4.9671 0.0012 12 8 0.2792 -4.9672 0.0011 13 7 2.1660 -6.1343 0.0018 14 6 1.4336 -7.4030 0.0019 15 6 2.4129 -8.5484 0.0020 16 6 2.9474 -9.1743 -1.1289 17 7 3.7565 -10.1211 -0.7279 18 7 3.7628 -10.1273 0.6728 19 6 4.5358 -11.0323 1.5272 20 6 4.2189 -12.4817 1.1533 21 9 4.9574 -13.3458 1.9687 22 6 2.9304 -9.1532 1.0963 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 3.1360 -6.1343 0.0022 29 1 0.8073 -7.4611 -0.8883 30 1 0.8065 -7.4605 0.8916 31 1 2.7293 -8.9204 -2.1557 32 1 5.6001 -10.8449 1.3857 33 1 4.2721 -10.8604 2.5708 34 1 3.1545 -12.6690 1.2947 35 1 4.4826 -12.6535 0.1096 36 1 2.7190 -8.8987 2.1244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888329252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:16 Heat of formation + Delta-G solvation = -49.208412 kcal Electronic energy + Delta-G solvation = -19082.707642 eV Core-core repulsion = 15709.557999 eV Total energy + Delta-G solvation = -3373.149644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.78229 -42.30131 -40.47933 -36.24965 -35.50044 -34.80134 -33.03002 -31.59295 -30.40057 -27.97519 -26.21209 -24.66456 -23.40442 -21.83394 -21.39951 -20.99542 -18.81767 -18.30305 -17.44360 -17.36617 -16.87320 -16.61393 -16.50983 -16.38960 -16.11968 -15.42260 -15.03398 -14.74595 -14.64814 -14.14210 -14.10241 -13.89793 -13.49606 -13.19416 -13.06747 -12.74310 -12.55813 -12.47741 -12.00036 -11.86144 -11.61011 -11.56934 -11.28885 -10.78087 -10.53399 -10.47295 -9.95742 -9.53644 -8.15241 -6.29143 0.80754 1.40532 1.43628 1.48078 1.55676 1.59162 1.80948 2.42971 2.67243 3.17404 3.20533 3.60926 3.80074 3.90644 3.98948 4.11448 4.19403 4.24837 4.36717 4.46576 4.58290 4.61772 4.73634 4.79564 4.89121 5.13524 5.15356 5.51072 5.56262 5.60722 5.68404 5.89434 5.96676 6.21236 6.62154 6.71996 6.89629 7.40481 7.44581 8.97102 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.046268 B = 0.002545 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.018320 B =10998.486546 C =11257.990593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.714 5.714 14 C 0.203 3.797 15 C -0.264 4.264 16 C 0.066 3.934 17 N -0.324 5.324 18 N -0.375 5.375 19 C 0.103 3.897 20 C 0.056 3.944 21 F -0.218 7.218 22 C 0.093 3.907 23 H 0.263 0.737 24 H -0.018 1.018 25 H -0.017 1.017 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.412 0.588 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.197 0.803 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.883 -24.816 3.434 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.367 5.367 14 C 0.079 3.921 15 C -0.276 4.276 16 C -0.121 4.121 17 N -0.144 5.144 18 N -0.156 5.156 19 C -0.018 4.018 20 C 0.001 3.999 21 F -0.199 7.199 22 C -0.055 4.055 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.002 0.998 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.249 0.751 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.214 0.786 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.793 -25.812 3.188 28.557 hybrid contribution -0.296 1.504 0.126 1.538 sum 11.498 -24.308 3.314 27.093 Atomic orbital electron populations 1.70174 1.08264 1.27820 1.51493 1.26138 0.95737 1.03918 0.94724 0.85383 0.78049 0.77417 0.79439 1.18781 1.21383 1.18686 1.21703 0.93972 0.91716 1.50741 0.90689 1.18690 0.93752 0.92445 0.94731 1.21628 0.99284 0.90394 1.04673 1.21255 0.87751 0.86710 0.74321 1.90658 1.16636 1.88422 1.51354 1.46095 1.10818 1.04525 1.75271 1.19317 0.91724 0.79080 1.02008 1.19939 1.09669 1.05084 0.92915 1.24165 0.94114 0.92972 1.00851 1.77353 1.23948 1.23566 0.89557 1.48553 1.35233 1.27286 1.04560 1.22425 0.97336 0.87350 0.94699 1.22147 0.96501 0.86696 0.94595 1.92782 1.79878 1.71552 1.75723 1.22902 0.91531 0.89744 1.01313 0.92885 0.99958 0.99842 0.87886 0.88041 0.75119 0.91922 0.91542 0.78635 0.87975 0.84583 0.89390 0.89878 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 13.29 21.45 0.28 -59.34 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 11 C 0.51 19.27 7.83 87.66 0.69 19.95 16 12 O -0.59 -28.51 15.98 -3.04 -0.05 -28.55 16 13 N -0.71 -18.31 5.55 -466.79 -2.59 -20.89 16 14 C 0.20 4.55 6.15 85.63 0.53 5.08 16 15 C -0.26 -4.51 5.47 -20.14 -0.11 -4.62 16 16 C 0.07 1.15 11.96 85.24 1.02 2.17 16 17 N -0.32 -5.96 12.42 -57.02 -0.71 -6.66 16 18 N -0.37 -5.04 3.68 -348.05 -1.28 -6.32 16 19 C 0.10 0.79 6.96 86.38 0.60 1.39 16 20 C 0.06 0.52 7.74 71.98 0.56 1.08 16 21 F -0.22 -2.85 17.36 44.97 0.78 -2.07 16 22 C 0.09 1.20 11.36 83.54 0.95 2.15 16 23 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 24 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 25 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 26 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 27 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 28 H 0.41 8.16 8.46 -92.71 -0.78 7.38 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.14 0.31 8.07 -2.39 -0.02 0.29 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -79.94 322.97 3.99 -75.95 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.30 Total: 7.26 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.22 Total: -5.69 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.29 Total: -93.22 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -79.94 3.99 -75.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888329252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.746 kcal (2) G-P(sol) polarization free energy of solvation -79.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds