Wall clock time and date at job start Mon Mar 30 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46818 * 2 1 4 4 C 1.50694 * 109.47253 * 120.00606 * 2 1 3 5 5 H 1.07991 * 120.00481 * 114.36407 * 4 2 1 6 6 C 1.37879 * 119.99554 * 294.35780 * 4 2 1 7 7 N 1.31522 * 119.99865 * 156.77132 * 6 4 2 8 8 Si 1.86801 * 120.00552 * 336.77041 * 6 4 2 9 9 H 1.48497 * 109.47283 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46763 * 59.99898 * 8 6 4 11 11 H 1.48499 * 109.46984 * 300.00274 * 8 6 4 12 12 C 1.50699 * 109.47170 * 240.00695 * 2 1 3 13 13 O 1.21284 * 120.00135 * 239.99509 * 12 2 1 14 14 N 1.34784 * 120.00160 * 59.99474 * 12 2 1 15 15 C 1.46496 * 119.99913 * 179.97438 * 14 12 2 16 16 C 1.52460 * 108.79138 * 276.65126 * 15 14 12 17 17 C 1.54795 * 108.73836 * 174.61719 * 16 15 14 18 18 H 1.09003 * 114.44545 * 196.96883 * 17 16 15 19 19 C 1.54967 * 106.18264 * 324.11483 * 17 16 15 20 20 C 1.52463 * 111.71808 * 80.58514 * 19 17 16 21 21 C 1.54970 * 111.71739 * 359.97438 * 20 19 17 22 22 H 1.09000 * 114.36108 * 152.82201 * 21 20 19 23 23 C 1.52459 * 108.79017 * 153.35161 * 15 14 12 24 24 S 1.84395 * 102.43022 * 28.49900 * 21 20 19 25 25 H 1.09007 * 109.46493 * 173.07748 * 1 2 3 26 26 H 1.08995 * 109.47403 * 293.07529 * 1 2 3 27 27 H 1.08998 * 109.47720 * 53.08108 * 1 2 3 28 28 H 0.96995 * 119.99732 * 354.93344 * 7 6 4 29 29 H 0.97000 * 119.99751 * 0.02562 * 14 12 2 30 30 H 1.09001 * 108.76008 * 35.00029 * 15 14 12 31 31 H 1.09001 * 109.50098 * 295.62456 * 16 15 14 32 32 H 1.08998 * 109.50744 * 55.74591 * 16 15 14 33 33 H 1.08996 * 109.04013 * 319.99092 * 19 17 16 34 34 H 1.08997 * 108.94775 * 201.11352 * 19 17 16 35 35 H 1.09007 * 109.03517 * 239.40573 * 20 19 17 36 36 H 1.08997 * 108.94574 * 120.53263 * 20 19 17 37 37 H 1.08999 * 109.50397 * 304.25677 * 23 15 14 38 38 H 1.09004 * 109.49723 * 64.37240 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5761 -1.6385 1.1338 6 6 1.7978 -0.1756 2.4793 7 7 1.8058 -0.9534 3.5398 8 14 1.4688 1.6538 2.6652 9 1 1.2484 1.9740 4.0984 10 1 0.2598 2.0211 1.8849 11 1 2.6358 2.4205 2.1600 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6963 -1.1194 14 7 1.7067 -0.2497 -2.4547 15 6 2.1955 -0.9399 -3.6509 16 6 3.6084 -0.4544 -3.9550 17 6 4.1748 -1.2807 -5.1351 18 1 5.2577 -1.2242 -5.2466 19 6 3.6243 -2.7185 -4.9591 20 6 2.1944 -2.8421 -5.4734 21 6 1.6690 -1.4969 -6.0357 22 1 0.9014 -1.5994 -6.8027 23 6 1.2226 -0.6854 -4.7967 24 16 3.2164 -0.6763 -6.6121 25 1 -0.3632 -1.0203 -0.1239 26 1 -0.3634 0.4028 0.9454 27 1 -0.3634 0.6173 -0.8216 28 1 1.9033 -1.9129 3.4368 29 1 1.1493 0.5391 -2.5436 30 1 2.2280 -2.0105 -3.4491 31 1 3.5827 0.6061 -4.2058 32 1 4.2417 -0.6071 -3.0812 33 1 3.6456 -2.9804 -3.9013 34 1 4.2611 -3.4112 -5.5093 35 1 1.5487 -3.1616 -4.6553 36 1 2.1658 -3.5933 -6.2626 37 1 0.2210 -0.9964 -4.4996 38 1 1.2171 0.3771 -5.0402 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888371659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:29 Heat of formation + Delta-G solvation = -40.772803 kcal Electronic energy + Delta-G solvation = -19289.063704 eV Core-core repulsion = 16450.200280 eV Total energy + Delta-G solvation = -2838.863423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10375 -38.12902 -33.99220 -33.77876 -32.02850 -31.31198 -29.82974 -25.41005 -24.83959 -24.53478 -22.34121 -20.27571 -19.89624 -19.35192 -17.50493 -17.28464 -16.72826 -15.91358 -14.69091 -14.36710 -14.07064 -13.79822 -13.74797 -13.59100 -13.29348 -13.11716 -12.70429 -12.46471 -12.28139 -11.90978 -11.76503 -11.45814 -11.22983 -11.09746 -10.80739 -10.63052 -10.53625 -10.51659 -10.21726 -9.86680 -9.79397 -8.95278 -8.76059 -8.59504 -8.15340 -7.79369 -6.46904 -4.02365 1.74037 2.06851 3.35189 3.41854 3.53532 3.60147 3.65353 4.17400 4.50150 4.54503 4.59059 4.69078 4.88464 4.90971 5.03040 5.13570 5.16740 5.21919 5.53612 5.58748 5.70567 5.75897 5.79099 5.82595 5.91446 5.94172 6.14470 6.18851 6.28546 6.42040 6.51432 6.89380 6.97353 7.22276 7.81959 8.27029 8.47141 9.04600 9.10488 9.63464 10.92440 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038013 B = 0.004729 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.405181 B = 5919.318594 C = 6053.475252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 H 0.043 0.957 4 C -0.595 4.595 5 H 0.075 0.925 6 C 0.036 3.964 7 N -0.898 5.898 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.277 1.277 11 H -0.284 1.284 12 C 0.528 3.472 13 O -0.537 6.537 14 N -0.744 5.744 15 C 0.132 3.868 16 C -0.127 4.127 17 C -0.013 4.013 18 H 0.124 0.876 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.023 4.023 22 H 0.126 0.874 23 C -0.124 4.124 24 S -0.327 6.327 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.271 0.729 29 H 0.394 0.606 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 1.043 -19.539 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 H 0.060 0.940 4 C -0.633 4.633 5 H 0.093 0.907 6 C -0.170 4.170 7 N -0.531 5.531 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.412 6.412 14 N -0.398 5.398 15 C 0.027 3.973 16 C -0.167 4.167 17 C -0.142 4.142 18 H 0.142 0.858 19 C -0.168 4.168 20 C -0.164 4.164 21 C -0.152 4.152 22 H 0.144 0.856 23 C -0.163 4.163 24 S -0.100 6.100 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.228 0.772 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.737 2.183 -19.298 19.435 hybrid contribution -0.243 -1.410 -0.333 1.469 sum -0.980 0.773 -19.631 19.671 Atomic orbital electron populations 1.22102 0.97131 1.00229 1.00243 1.19173 0.93555 0.96800 0.92289 0.93974 1.21875 1.40413 1.11407 0.89574 0.90686 1.25695 0.93606 1.05612 0.92075 1.70824 1.43905 1.06499 1.31833 0.84188 0.77023 0.76283 0.76318 1.20967 1.20353 1.21003 1.21477 0.78576 0.84232 0.84019 1.90542 1.37454 1.26592 1.86567 1.46405 1.55318 1.32636 1.05411 1.21015 0.91988 0.99392 0.84923 1.22513 0.96882 0.99896 0.97389 1.24807 1.01010 0.96227 0.92167 0.85793 1.22312 0.95613 0.95491 1.03357 1.22324 0.96222 0.96506 1.01343 1.24462 0.96169 0.95829 0.98731 0.85639 1.22354 0.99426 1.01129 0.93425 1.88361 1.12581 1.71970 1.37073 0.93523 0.92110 0.95533 0.91945 0.77244 0.88579 0.90339 0.90067 0.89270 0.90905 0.90055 0.90896 0.90221 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.77 37.16 0.33 -2.51 16 2 C 0.00 0.09 2.23 -92.93 -0.21 -0.12 16 3 H 0.04 0.94 6.72 -51.93 -0.35 0.59 16 4 C -0.60 -16.97 8.57 -34.44 -0.30 -17.26 16 5 H 0.08 2.43 7.02 -52.49 -0.37 2.06 16 6 C 0.04 1.03 5.19 -17.82 -0.09 0.94 16 7 N -0.90 -27.52 13.70 55.43 0.76 -26.76 16 8 Si 1.03 24.30 26.45 -169.99 -4.50 19.80 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.28 -5.87 6.16 56.52 0.35 -5.52 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.53 11.28 7.05 -10.98 -0.08 11.20 16 13 O -0.54 -13.42 15.05 5.55 0.08 -13.34 16 14 N -0.74 -11.73 4.93 -54.35 -0.27 -12.00 16 15 C 0.13 1.77 1.91 -68.49 -0.13 1.64 16 16 C -0.13 -1.67 4.98 -26.06 -0.13 -1.80 16 17 C -0.01 -0.15 4.90 -24.75 -0.12 -0.27 16 18 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.13 -1.39 5.23 -25.97 -0.14 -1.53 16 20 C -0.13 -1.22 5.22 -25.97 -0.14 -1.36 16 21 C -0.02 -0.22 4.83 -24.80 -0.12 -0.34 16 22 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.12 -1.30 4.84 -26.12 -0.13 -1.42 16 24 S -0.33 -3.80 22.07 -107.50 -2.37 -6.17 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.30 5.49 -51.93 -0.28 1.02 16 27 H 0.03 0.42 7.77 -51.93 -0.40 0.02 16 28 H 0.27 8.36 8.73 -40.82 -0.36 8.00 16 29 H 0.39 5.24 8.15 -40.82 -0.33 4.91 16 30 H 0.10 1.45 3.68 -51.93 -0.19 1.26 16 31 H 0.08 1.01 8.03 -51.93 -0.42 0.60 16 32 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 33 H 0.09 1.13 6.79 -51.93 -0.35 0.78 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.83 6.81 -51.93 -0.35 0.48 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -32.27 300.39 -8.64 -40.91 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.63 Total: 5.87 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.25 Total: -12.83 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.49 Total: -38.76 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.50 Total: 19.80 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.37 Total: -6.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.27 -8.64 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888371659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.141 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds