Wall clock time and date at job start Mon Mar 30 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46818 * 2 1 4 4 C 1.50694 * 109.47253 * 120.00606 * 2 1 3 5 5 H 1.07991 * 120.00481 * 114.36407 * 4 2 1 6 6 C 1.37879 * 119.99554 * 294.35780 * 4 2 1 7 7 N 1.31522 * 119.99865 * 156.77132 * 6 4 2 8 8 Si 1.86801 * 120.00552 * 336.77041 * 6 4 2 9 9 H 1.48497 * 109.47283 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46763 * 59.99898 * 8 6 4 11 11 H 1.48499 * 109.46984 * 300.00274 * 8 6 4 12 12 C 1.50699 * 109.47170 * 240.00695 * 2 1 3 13 13 O 1.21284 * 120.00135 * 239.99509 * 12 2 1 14 14 N 1.34784 * 120.00160 * 59.99474 * 12 2 1 15 15 C 1.46496 * 119.99913 * 179.97438 * 14 12 2 16 16 C 1.52460 * 108.79138 * 276.65126 * 15 14 12 17 17 C 1.54795 * 108.73836 * 174.61719 * 16 15 14 18 18 H 1.09003 * 114.44545 * 196.96883 * 17 16 15 19 19 C 1.54967 * 106.18264 * 324.11483 * 17 16 15 20 20 C 1.52463 * 111.71808 * 80.58514 * 19 17 16 21 21 C 1.54970 * 111.71739 * 359.97438 * 20 19 17 22 22 H 1.09000 * 114.36108 * 152.82201 * 21 20 19 23 23 C 1.52459 * 108.79017 * 153.35161 * 15 14 12 24 24 S 1.84395 * 102.43022 * 28.49900 * 21 20 19 25 25 H 1.09007 * 109.46493 * 173.07748 * 1 2 3 26 26 H 1.08995 * 109.47403 * 293.07529 * 1 2 3 27 27 H 1.08998 * 109.47720 * 53.08108 * 1 2 3 28 28 H 0.96995 * 119.99732 * 354.93344 * 7 6 4 29 29 H 0.97000 * 119.99751 * 0.02562 * 14 12 2 30 30 H 1.09001 * 108.76008 * 35.00029 * 15 14 12 31 31 H 1.09001 * 109.50098 * 295.62456 * 16 15 14 32 32 H 1.08998 * 109.50744 * 55.74591 * 16 15 14 33 33 H 1.08996 * 109.04013 * 319.99092 * 19 17 16 34 34 H 1.08997 * 108.94775 * 201.11352 * 19 17 16 35 35 H 1.09007 * 109.03517 * 239.40573 * 20 19 17 36 36 H 1.08997 * 108.94574 * 120.53263 * 20 19 17 37 37 H 1.08999 * 109.50397 * 304.25677 * 23 15 14 38 38 H 1.09004 * 109.49723 * 64.37240 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5761 -1.6385 1.1338 6 6 1.7978 -0.1756 2.4793 7 7 1.8058 -0.9534 3.5398 8 14 1.4688 1.6538 2.6652 9 1 1.2484 1.9740 4.0984 10 1 0.2598 2.0211 1.8849 11 1 2.6358 2.4205 2.1600 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6963 -1.1194 14 7 1.7067 -0.2497 -2.4547 15 6 2.1955 -0.9399 -3.6509 16 6 3.6084 -0.4544 -3.9550 17 6 4.1748 -1.2807 -5.1351 18 1 5.2577 -1.2242 -5.2466 19 6 3.6243 -2.7185 -4.9591 20 6 2.1944 -2.8421 -5.4734 21 6 1.6690 -1.4969 -6.0357 22 1 0.9014 -1.5994 -6.8027 23 6 1.2226 -0.6854 -4.7967 24 16 3.2164 -0.6763 -6.6121 25 1 -0.3632 -1.0203 -0.1239 26 1 -0.3634 0.4028 0.9454 27 1 -0.3634 0.6173 -0.8216 28 1 1.9033 -1.9129 3.4368 29 1 1.1493 0.5391 -2.5436 30 1 2.2280 -2.0105 -3.4491 31 1 3.5827 0.6061 -4.2058 32 1 4.2417 -0.6071 -3.0812 33 1 3.6456 -2.9804 -3.9013 34 1 4.2611 -3.4112 -5.5093 35 1 1.5487 -3.1616 -4.6553 36 1 2.1658 -3.5933 -6.2626 37 1 0.2210 -0.9964 -4.4996 38 1 1.2171 0.3771 -5.0402 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888371659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:29 Heat of formation + Delta-G solvation = -62.854201 kcal Electronic energy + Delta-G solvation = -19290.021225 eV Core-core repulsion = 16450.200280 eV Total energy + Delta-G solvation = -2839.820944 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35225 -39.53803 -35.77970 -35.35625 -33.21999 -32.91906 -31.04473 -26.79776 -26.51511 -25.45142 -24.05392 -21.33270 -20.98281 -20.81618 -19.48046 -18.41284 -17.91143 -17.52272 -16.04607 -15.80895 -15.40207 -15.22541 -14.93234 -14.70731 -14.67879 -14.18378 -14.01076 -13.89932 -13.63750 -13.27729 -13.20409 -12.92268 -12.72503 -12.36037 -12.13358 -11.98879 -11.82364 -11.65871 -11.56415 -11.36747 -11.04909 -10.74542 -10.52115 -10.32449 -9.99849 -8.77337 -8.70041 -6.32585 0.86853 1.20969 1.49126 1.58189 1.75616 1.88515 2.31176 2.54692 3.04374 3.30295 3.62516 3.69699 3.81856 3.93880 4.03250 4.11098 4.16396 4.19015 4.36908 4.48779 4.62277 4.70824 4.76530 4.79543 4.85386 4.87083 4.92438 4.99565 5.05176 5.13960 5.16394 5.26034 5.53666 5.60997 5.89776 6.08107 6.63864 6.77480 7.41892 7.52706 8.61219 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038013 B = 0.004729 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.405181 B = 5919.318594 C = 6053.475252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.004 4.004 3 H 0.064 0.936 4 C -0.606 4.606 5 H 0.015 0.985 6 C -0.017 4.017 7 N -0.932 5.932 8 Si 1.081 2.919 9 H -0.291 1.291 10 H -0.229 1.229 11 H -0.266 1.266 12 C 0.527 3.473 13 O -0.587 6.587 14 N -0.720 5.720 15 C 0.130 3.870 16 C -0.122 4.122 17 C -0.011 4.011 18 H 0.133 0.867 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.011 4.011 22 H 0.154 0.846 23 C -0.116 4.116 24 S -0.341 6.341 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.412 0.588 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 3.504 -22.420 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 H 0.081 0.919 4 C -0.643 4.643 5 H 0.034 0.966 6 C -0.215 4.215 7 N -0.567 5.567 8 Si 0.900 3.100 9 H -0.217 1.217 10 H -0.152 1.152 11 H -0.191 1.191 12 C 0.315 3.685 13 O -0.466 6.466 14 N -0.373 5.373 15 C 0.026 3.974 16 C -0.162 4.162 17 C -0.140 4.140 18 H 0.150 0.850 19 C -0.167 4.167 20 C -0.164 4.164 21 C -0.139 4.139 22 H 0.172 0.828 23 C -0.156 4.156 24 S -0.113 6.113 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.248 0.752 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.636 4.661 -22.253 22.889 hybrid contribution 0.411 -2.278 0.515 2.372 sum -2.225 2.383 -21.739 21.982 Atomic orbital electron populations 1.21968 0.94364 1.00645 1.02006 1.19170 0.95598 0.97026 0.90810 0.91863 1.21964 1.39922 1.09740 0.92721 0.96626 1.27383 0.92574 1.10032 0.91483 1.70975 1.47110 1.05490 1.33096 0.83647 0.79533 0.70016 0.76803 1.21716 1.15226 1.19111 1.21194 0.78250 0.83607 0.85409 1.90536 1.39806 1.28814 1.87408 1.46083 1.54166 1.32629 1.04401 1.21202 0.93070 0.98197 0.84951 1.22431 0.96262 1.00584 0.96933 1.24784 1.01645 0.96050 0.91512 0.84957 1.22308 0.97001 0.95503 1.01914 1.22318 0.95089 0.97322 1.01686 1.24608 0.95707 0.94845 0.98755 0.82834 1.22309 0.98946 1.02088 0.92236 1.88446 1.13916 1.72296 1.36687 0.94846 0.92917 0.90118 0.94175 0.75175 0.90337 0.89717 0.93381 0.91998 0.89607 0.90676 0.89093 0.88671 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.77 71.98 0.63 -4.37 16 2 C 0.00 -0.19 2.23 -12.29 -0.03 -0.22 16 3 H 0.06 2.62 6.72 -2.39 -0.02 2.61 16 4 C -0.61 -35.77 8.57 25.60 0.22 -35.55 16 5 H 0.02 1.08 7.02 -2.91 -0.02 1.06 16 6 C -0.02 -0.97 5.19 84.65 0.44 -0.54 16 7 N -0.93 -59.59 13.70 21.45 0.29 -59.30 16 8 Si 1.08 47.60 26.45 68.60 1.81 49.41 16 9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.23 -8.33 6.16 99.48 0.61 -7.71 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 C 0.53 22.50 7.05 87.66 0.62 23.11 16 13 O -0.59 -30.82 15.05 -3.04 -0.05 -30.86 16 14 N -0.72 -21.29 4.93 -444.24 -2.19 -23.48 16 15 C 0.13 3.31 1.91 44.63 0.09 3.40 16 16 C -0.12 -3.14 4.98 31.03 0.15 -2.99 16 17 C -0.01 -0.24 4.90 31.88 0.16 -0.09 16 18 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 19 C -0.13 -2.69 5.23 31.09 0.16 -2.53 16 20 C -0.13 -2.18 5.22 31.09 0.16 -2.02 16 21 C -0.01 -0.17 4.83 31.84 0.15 -0.01 16 22 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 23 C -0.12 -2.02 4.84 30.99 0.15 -1.87 16 24 S -0.34 -7.00 22.07 -56.49 -1.25 -8.24 16 25 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.05 2.08 5.49 -2.39 -0.01 2.07 16 27 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 28 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 29 H 0.41 9.30 8.15 -92.71 -0.76 8.55 16 30 H 0.08 2.37 3.68 -2.39 -0.01 2.36 16 31 H 0.08 2.05 8.03 -2.39 -0.02 2.03 16 32 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 33 H 0.06 1.65 6.79 -2.39 -0.02 1.63 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.43 6.81 -2.38 -0.02 1.42 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 Total: -1.00 -75.87 300.39 1.71 -74.16 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.18 Total: 21.98 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 2.91 Total: -23.67 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.89 Total: -82.78 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.81 Total: 49.41 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.25 Total: -8.24 kcal Total: -75.87 1.71 -74.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888371659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.307 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds