Wall clock time and date at job start Mon Mar 30 2020 00:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47549 * 2 1 4 4 C 1.50706 * 109.46986 * 240.00333 * 2 1 3 5 5 H 1.08008 * 119.99856 * 240.00043 * 4 2 1 6 6 C 1.37866 * 120.00299 * 59.99748 * 4 2 1 7 7 N 1.31517 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47198 * 60.00259 * 8 6 4 10 10 H 1.48502 * 109.47256 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47125 * 299.99733 * 8 6 4 12 12 C 1.50704 * 109.47270 * 120.00003 * 2 1 3 13 13 O 1.21285 * 119.99749 * 119.99695 * 12 2 1 14 14 N 1.34771 * 119.99951 * 300.00140 * 12 2 1 15 15 C 1.46501 * 119.99785 * 180.02562 * 14 12 2 16 16 C 1.52461 * 108.70496 * 119.04409 * 15 14 12 17 17 C 1.54743 * 109.27739 * 57.40203 * 16 15 14 18 18 H 1.09002 * 114.19033 * 196.09598 * 17 16 15 19 19 C 1.54749 * 105.67915 * 323.03501 * 17 16 15 20 20 C 1.52444 * 111.84134 * 80.32833 * 19 17 16 21 21 C 1.54974 * 111.63030 * 0.91408 * 20 19 17 22 22 H 1.09003 * 114.36552 * 152.28158 * 21 20 19 23 23 C 1.52469 * 108.78493 * 242.38906 * 15 14 12 24 24 S 1.84400 * 101.86456 * 28.35450 * 21 20 19 25 25 H 1.09009 * 109.47090 * 299.99822 * 1 2 3 26 26 H 1.09001 * 109.47363 * 59.99851 * 1 2 3 27 27 H 1.08997 * 109.47549 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99824 * 180.02562 * 7 6 4 29 29 H 0.96994 * 120.00287 * 359.97438 * 14 12 2 30 30 H 1.09000 * 108.76197 * 0.73466 * 15 14 12 31 31 H 1.09000 * 109.50342 * 177.34857 * 16 15 14 32 32 H 1.09005 * 109.49933 * 297.42585 * 16 15 14 33 33 H 1.09007 * 108.19316 * 320.21695 * 19 17 16 34 34 H 1.08997 * 109.75087 * 201.48792 * 19 17 16 35 35 H 1.09000 * 109.04515 * 240.37916 * 20 19 17 36 36 H 1.09000 * 109.04037 * 121.45169 * 20 19 17 37 37 H 1.09008 * 109.49596 * 182.70147 * 23 15 14 38 38 H 1.08996 * 109.50444 * 62.58727 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 6 3.0586 0.0259 4.4544 17 6 2.2264 1.2819 4.8072 18 1 2.8215 2.1352 5.1326 19 6 1.3327 1.5516 3.5730 20 6 0.1039 0.6495 3.5545 21 6 0.0626 -0.2849 4.7901 22 1 -0.9403 -0.5860 5.0929 23 6 0.9999 -1.4647 4.4381 24 16 0.9710 0.7106 6.0488 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7088 1.1614 -3.4844 29 1 1.1494 0.5388 2.5436 30 1 2.8100 -1.7857 3.3411 31 1 3.3910 -0.4599 5.3718 32 1 3.9260 0.3179 3.8623 33 1 1.9245 1.3648 2.6768 34 1 1.0097 2.5926 3.5725 35 1 0.1224 0.0419 2.6497 36 1 -0.7924 1.2697 3.5475 37 1 1.3482 -1.9390 5.3556 38 1 0.4577 -2.1926 3.8346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888371660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:31 Heat of formation + Delta-G solvation = 120.804465 kcal Electronic energy + Delta-G solvation = -19999.536619 eV Core-core repulsion = 17167.679712 eV Total energy + Delta-G solvation = -2831.856907 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.30026 -37.62615 -33.91323 -32.67881 -32.07564 -32.02393 -30.19374 -25.19553 -24.96692 -24.38324 -22.31334 -20.95306 -20.36395 -19.56442 -17.31735 -16.37625 -16.11304 -15.35439 -14.59033 -14.40059 -14.35411 -13.63511 -13.58115 -13.31334 -13.07949 -12.90352 -12.74556 -12.42155 -12.21141 -11.82354 -11.42854 -11.25479 -10.97435 -10.77497 -10.66313 -10.60153 -10.47095 -10.42786 -10.28592 -9.95385 -9.39998 -9.00771 -8.53821 -8.30777 -7.92028 -7.71795 -6.05191 -4.08107 1.82459 2.15698 3.35045 3.37631 3.43175 3.70892 3.97749 4.24552 4.46690 4.52590 4.61642 4.64501 4.94474 4.99544 5.00460 5.12438 5.28318 5.43374 5.62641 5.66662 5.78299 5.82129 5.87762 5.91478 5.92482 6.00342 6.20900 6.36961 6.53284 6.74009 6.86727 7.11767 7.41820 7.71457 7.96425 8.10526 8.41008 9.01082 9.25691 9.57818 11.02430 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.005355 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.599510 B = 5227.934227 C = 5443.695160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.027 3.973 3 H 0.050 0.950 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.493 3.507 13 O -0.550 6.550 14 N -0.784 5.784 15 C 0.128 3.872 16 C -0.123 4.123 17 C -0.013 4.013 18 H 0.125 0.875 19 C -0.189 4.189 20 C -0.197 4.197 21 C -0.017 4.017 22 H 0.124 0.876 23 C -0.123 4.123 24 S -0.327 6.327 25 H 0.010 0.990 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.448 0.552 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 1.900 14.542 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.284 3.716 13 O -0.426 6.426 14 N -0.475 5.475 15 C 0.022 3.978 16 C -0.163 4.163 17 C -0.141 4.141 18 H 0.142 0.858 19 C -0.229 4.229 20 C -0.237 4.237 21 C -0.146 4.146 22 H 0.142 0.858 23 C -0.163 4.163 24 S -0.099 6.099 25 H 0.029 0.971 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.325 0.675 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.466 1.633 15.542 15.696 hybrid contribution 0.159 -0.239 -1.803 1.825 sum -1.307 1.395 13.740 13.872 Atomic orbital electron populations 1.21832 0.96843 0.99965 1.00891 1.18865 0.93929 0.96730 0.89846 0.93269 1.21094 1.30947 1.12816 0.88974 0.90825 1.24949 0.95125 0.95067 0.99116 1.69853 1.37128 1.23074 1.23652 0.86509 0.79283 0.79721 0.81642 1.20216 1.21393 1.20216 1.22347 0.78710 0.84565 0.86012 1.90490 1.37815 1.26990 1.87339 1.51940 1.55406 1.34767 1.05406 1.20631 0.94767 0.96478 0.85892 1.22399 0.98222 0.94675 1.01020 1.24634 0.96219 1.00464 0.92792 0.85751 1.23552 0.96619 1.00926 1.01798 1.23860 0.98211 0.99159 1.02442 1.24498 1.00674 0.96530 0.92860 0.85839 1.22405 0.96227 0.96643 1.01033 1.88182 1.36657 1.64249 1.20802 0.97137 0.88612 0.94776 0.92909 0.67499 0.87970 0.89891 0.90186 0.83920 0.90531 0.82897 0.90785 0.89968 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.69 37.15 0.32 -2.69 16 2 C 0.03 0.66 2.64 -92.92 -0.25 0.41 16 3 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.50 -13.93 8.37 -34.44 -0.29 -14.22 16 5 H 0.07 2.18 6.75 -52.48 -0.35 1.82 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.49 10.73 7.14 -10.99 -0.08 10.65 16 13 O -0.55 -13.89 14.76 5.55 0.08 -13.81 16 14 N -0.78 -12.71 1.53 -54.34 -0.08 -12.79 16 15 C 0.13 1.81 2.97 -68.48 -0.20 1.61 16 16 C -0.12 -1.48 5.36 -26.09 -0.14 -1.62 16 17 C -0.01 -0.15 4.87 -24.89 -0.12 -0.27 16 18 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.19 -2.28 4.98 -26.09 -0.13 -2.41 16 20 C -0.20 -2.41 4.87 -25.97 -0.13 -2.53 16 21 C -0.02 -0.20 4.83 -24.77 -0.12 -0.32 16 22 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 23 C -0.12 -1.50 5.36 -26.09 -0.14 -1.64 16 24 S -0.33 -4.00 22.11 -107.50 -2.38 -6.38 16 25 H 0.01 0.18 6.14 -51.92 -0.32 -0.14 16 26 H 0.10 2.33 6.07 -51.93 -0.32 2.02 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.45 6.48 0.96 -190.83 -0.18 6.30 16 30 H 0.10 1.68 6.84 -51.93 -0.36 1.33 16 31 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.14 1.97 5.03 -83.72 -0.42 1.55 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.15 2.17 3.06 -88.48 -0.27 1.90 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.91 8.05 -51.92 -0.42 0.50 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -30.13 290.36 -9.33 -39.46 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.57 Total: 8.18 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.36 Total: -11.54 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.54 Total: -36.87 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.38 Total: -6.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.13 -9.33 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888371660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.262 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds