Wall clock time and date at job start Mon Mar 30 2020 00:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47549 * 2 1 4 4 C 1.50706 * 109.46986 * 240.00333 * 2 1 3 5 5 H 1.08008 * 119.99856 * 240.00043 * 4 2 1 6 6 C 1.37866 * 120.00299 * 59.99748 * 4 2 1 7 7 N 1.31517 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47198 * 60.00259 * 8 6 4 10 10 H 1.48502 * 109.47256 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47125 * 299.99733 * 8 6 4 12 12 C 1.50704 * 109.47270 * 120.00003 * 2 1 3 13 13 O 1.21285 * 119.99749 * 119.99695 * 12 2 1 14 14 N 1.34771 * 119.99951 * 300.00140 * 12 2 1 15 15 C 1.46501 * 119.99785 * 180.02562 * 14 12 2 16 16 C 1.52461 * 108.70496 * 119.04409 * 15 14 12 17 17 C 1.54743 * 109.27739 * 57.40203 * 16 15 14 18 18 H 1.09002 * 114.19033 * 196.09598 * 17 16 15 19 19 C 1.54749 * 105.67915 * 323.03501 * 17 16 15 20 20 C 1.52444 * 111.84134 * 80.32833 * 19 17 16 21 21 C 1.54974 * 111.63030 * 0.91408 * 20 19 17 22 22 H 1.09003 * 114.36552 * 152.28158 * 21 20 19 23 23 C 1.52469 * 108.78493 * 242.38906 * 15 14 12 24 24 S 1.84400 * 101.86456 * 28.35450 * 21 20 19 25 25 H 1.09009 * 109.47090 * 299.99822 * 1 2 3 26 26 H 1.09001 * 109.47363 * 59.99851 * 1 2 3 27 27 H 1.08997 * 109.47549 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99824 * 180.02562 * 7 6 4 29 29 H 0.96994 * 120.00287 * 359.97438 * 14 12 2 30 30 H 1.09000 * 108.76197 * 0.73466 * 15 14 12 31 31 H 1.09000 * 109.50342 * 177.34857 * 16 15 14 32 32 H 1.09005 * 109.49933 * 297.42585 * 16 15 14 33 33 H 1.09007 * 108.19316 * 320.21695 * 19 17 16 34 34 H 1.08997 * 109.75087 * 201.48792 * 19 17 16 35 35 H 1.09000 * 109.04515 * 240.37916 * 20 19 17 36 36 H 1.09000 * 109.04037 * 121.45169 * 20 19 17 37 37 H 1.09008 * 109.49596 * 182.70147 * 23 15 14 38 38 H 1.08996 * 109.50444 * 62.58727 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 6 3.0586 0.0259 4.4544 17 6 2.2264 1.2819 4.8072 18 1 2.8215 2.1352 5.1326 19 6 1.3327 1.5516 3.5730 20 6 0.1039 0.6495 3.5545 21 6 0.0626 -0.2849 4.7901 22 1 -0.9403 -0.5860 5.0929 23 6 0.9999 -1.4647 4.4381 24 16 0.9710 0.7106 6.0488 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7088 1.1614 -3.4844 29 1 1.1494 0.5388 2.5436 30 1 2.8100 -1.7857 3.3411 31 1 3.3910 -0.4599 5.3718 32 1 3.9260 0.3179 3.8623 33 1 1.9245 1.3648 2.6768 34 1 1.0097 2.5926 3.5725 35 1 0.1224 0.0419 2.6497 36 1 -0.7924 1.2697 3.5475 37 1 1.3482 -1.9390 5.3556 38 1 0.4577 -2.1926 3.8346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888371660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:30 Heat of formation + Delta-G solvation = 104.279117 kcal Electronic energy + Delta-G solvation = -20000.253211 eV Core-core repulsion = 17167.679712 eV Total energy + Delta-G solvation = -2832.573500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.50995 -39.28607 -35.82802 -34.06575 -33.32136 -32.98892 -32.04829 -27.20967 -26.27483 -25.36847 -23.94108 -22.13939 -21.36793 -21.04443 -18.45406 -18.25981 -17.71843 -16.86382 -16.15749 -15.86292 -15.72928 -15.07430 -14.72630 -14.62778 -14.47764 -14.00932 -13.83052 -13.65705 -13.64492 -13.27510 -12.94543 -12.81371 -12.67678 -12.55861 -12.27731 -12.17846 -11.94127 -11.55010 -11.54602 -11.42924 -11.01977 -10.59785 -10.42535 -10.13053 -9.26814 -8.67032 -8.14228 -6.23954 0.89500 1.21979 1.41582 1.42458 1.51192 1.99773 2.40384 2.66534 3.15362 3.23605 3.50447 3.64257 3.68627 3.88475 4.01156 4.04024 4.12057 4.33522 4.54359 4.62500 4.67937 4.74245 4.81518 4.85611 4.89820 4.90783 4.96948 4.98235 5.02828 5.05668 5.19321 5.50505 5.70181 5.78950 5.96005 6.23478 6.73629 6.86912 7.42476 7.62263 8.91192 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.005355 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.599510 B = 5227.934227 C = 5443.695160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.022 3.978 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.596 6.596 14 N -0.756 5.756 15 C 0.123 3.877 16 C -0.119 4.119 17 C -0.006 4.006 18 H 0.146 0.854 19 C -0.191 4.191 20 C -0.199 4.199 21 C -0.011 4.011 22 H 0.144 0.856 23 C -0.119 4.119 24 S -0.331 6.331 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.024 0.976 28 H 0.265 0.735 29 H 0.457 0.543 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 2.811 16.061 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.284 3.716 13 O -0.476 6.476 14 N -0.448 5.448 15 C 0.018 3.982 16 C -0.159 4.159 17 C -0.134 4.134 18 H 0.164 0.836 19 C -0.231 4.231 20 C -0.238 4.238 21 C -0.139 4.139 22 H 0.162 0.838 23 C -0.159 4.159 24 S -0.103 6.103 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.338 0.662 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.287 2.589 17.104 17.449 hybrid contribution 0.401 -0.489 -2.199 2.288 sum -1.886 2.100 14.905 15.170 Atomic orbital electron populations 1.21636 0.95251 0.99592 1.01769 1.18800 0.95220 0.95822 0.90046 0.94287 1.21255 1.31504 1.12690 0.91216 0.93527 1.25561 0.95253 0.95762 1.01297 1.69929 1.37188 1.23480 1.24314 0.85694 0.78621 0.78749 0.79052 1.20292 1.19938 1.20329 1.21962 0.78496 0.83938 0.87230 1.90465 1.40112 1.28981 1.88083 1.52074 1.54092 1.34360 1.04287 1.20834 0.95760 0.96161 0.85403 1.22356 0.97674 0.94739 1.01113 1.24694 0.95927 1.00592 0.92202 0.83592 1.23456 0.96436 1.02116 1.01069 1.23736 0.99159 0.99330 1.01608 1.24547 1.01401 0.95653 0.92341 0.83814 1.22361 0.95412 0.96965 1.01136 1.88273 1.36812 1.64242 1.20976 0.92977 0.90905 0.95652 0.92615 0.66205 0.90621 0.88337 0.90694 0.86013 0.88596 0.85134 0.88872 0.88440 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.69 71.98 0.63 -4.84 16 2 C 0.02 1.09 2.64 -12.29 -0.03 1.06 16 3 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.53 -30.38 8.37 25.60 0.21 -30.17 16 5 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -50.31 11.32 21.44 0.24 -50.06 16 8 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.49 22.02 7.14 87.66 0.63 22.65 16 13 O -0.60 -31.40 14.76 -3.04 -0.04 -31.44 16 14 N -0.76 -24.28 1.53 -444.22 -0.68 -24.96 16 15 C 0.12 3.41 2.97 44.64 0.13 3.54 16 16 C -0.12 -2.65 5.36 31.01 0.17 -2.49 16 17 C -0.01 -0.12 4.87 31.79 0.15 0.03 16 18 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 19 C -0.19 -4.10 4.98 31.01 0.15 -3.94 16 20 C -0.20 -4.30 4.87 31.09 0.15 -4.15 16 21 C -0.01 -0.22 4.83 31.86 0.15 -0.07 16 22 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 23 C -0.12 -2.69 5.36 31.01 0.17 -2.52 16 24 S -0.33 -6.99 22.11 -56.49 -1.25 -8.24 16 25 H 0.05 1.78 6.14 -2.38 -0.01 1.77 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 29 H 0.46 12.64 0.96 -233.62 -0.22 12.42 16 30 H 0.08 2.55 6.84 -2.39 -0.02 2.53 16 31 H 0.10 1.93 8.05 -2.39 -0.02 1.91 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.12 3.19 5.03 -65.15 -0.33 2.86 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.13 3.46 3.06 -74.56 -0.23 3.23 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.94 8.05 -2.38 -0.02 1.92 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.08 290.36 3.57 -62.51 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.31 Total: 24.77 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 2.96 Total: -19.31 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -0.44 Total: -75.02 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.04 Total: -31.44 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.25 Total: -8.24 kcal Total: -66.08 3.57 -62.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888371660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.790 kcal (2) G-P(sol) polarization free energy of solvation -66.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds