Wall clock time and date at job start Mon Mar 30 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47345 * 239.99862 * 2 1 3 5 5 H 1.08001 * 120.00308 * 240.00687 * 4 2 1 6 6 C 1.37873 * 119.99919 * 59.99636 * 4 2 1 7 7 N 1.31512 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47194 * 90.00302 * 8 6 4 10 10 H 1.48498 * 109.47246 * 210.00408 * 8 6 4 11 11 H 1.48501 * 109.46935 * 330.00478 * 8 6 4 12 12 C 1.50704 * 109.47221 * 119.99886 * 2 1 3 13 13 O 1.21283 * 119.99617 * 119.99670 * 12 2 1 14 14 N 1.34776 * 119.99993 * 299.99922 * 12 2 1 15 15 C 1.47288 * 126.69451 * 0.02562 * 14 12 2 16 16 C 1.53933 * 106.16560 * 210.88797 * 15 14 12 17 17 H 1.09001 * 110.01400 * 222.71288 * 16 15 14 18 18 C 1.54143 * 109.08097 * 102.44749 * 16 15 14 19 19 S 1.83914 * 102.70632 * 218.59425 * 18 16 15 20 20 C 1.83921 * 94.80697 * 34.67932 * 19 18 16 21 21 C 1.53301 * 105.62232 * 341.42414 * 16 15 14 22 22 C 1.53004 * 110.03559 * 241.30413 * 21 16 15 23 23 C 1.47287 * 126.69595 * 179.97438 * 14 12 2 24 24 H 1.09003 * 109.46594 * 300.00012 * 1 2 3 25 25 H 1.08998 * 109.46726 * 60.00290 * 1 2 3 26 26 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00689 * 179.97438 * 7 6 4 28 28 H 1.08993 * 110.11889 * 330.05973 * 15 14 12 29 29 H 1.08998 * 110.11677 * 91.71807 * 15 14 12 30 30 H 1.08995 * 110.75664 * 336.89840 * 18 16 15 31 31 H 1.09002 * 110.75953 * 100.28720 * 18 16 15 32 32 H 1.08996 * 110.76156 * 207.01966 * 20 19 18 33 33 H 1.08993 * 110.76480 * 83.61946 * 20 19 18 34 34 H 1.08994 * 109.47090 * 176.98047 * 22 21 16 35 35 H 1.09003 * 109.46712 * 296.97700 * 22 21 16 36 36 H 1.09001 * 109.47125 * 56.97626 * 22 21 16 37 37 H 1.08998 * 110.11553 * 29.93787 * 23 14 12 38 38 H 1.09001 * 110.11944 * 268.28542 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 0.8745 0.9263 2.7598 16 6 1.4039 1.4926 4.0897 17 1 0.5705 1.7706 4.7349 18 6 2.2701 2.7341 3.7994 19 16 3.6412 2.5635 5.0132 20 6 3.6909 0.7267 4.9324 21 6 2.2083 0.3561 4.7312 22 6 1.5885 -0.0309 6.0755 23 6 2.1130 -0.8253 3.7481 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1617 -3.4843 28 1 0.9732 1.6706 1.9697 29 1 -0.1688 0.6295 2.8677 30 1 2.6519 2.7087 2.7789 31 1 1.7061 3.6494 3.9795 32 1 4.0704 0.3091 5.8649 33 1 4.2909 0.3933 4.0858 34 1 2.1347 -0.8742 6.4980 35 1 1.6439 0.8168 6.7585 36 1 0.5455 -0.3108 5.9276 37 1 3.0831 -1.3131 3.6533 38 1 1.3654 -1.5401 4.0919 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891178676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:14 Heat of formation + Delta-G solvation = -40.464890 kcal Electronic energy + Delta-G solvation = -19456.023466 eV Core-core repulsion = 16617.173395 eV Total energy + Delta-G solvation = -2838.850071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21324 -37.76827 -33.95314 -33.44497 -31.87390 -30.44660 -27.82830 -26.24603 -26.16666 -25.12497 -22.71825 -21.54082 -19.22314 -18.70457 -16.61303 -16.25465 -15.93910 -15.63329 -14.92716 -14.62661 -14.25454 -14.03966 -14.01701 -13.40310 -13.03229 -12.74361 -12.47931 -12.21588 -11.92570 -11.91361 -11.61902 -11.53577 -11.11922 -11.01107 -10.99679 -10.79415 -10.71203 -10.52524 -10.29702 -10.01578 -9.97353 -8.99268 -8.66534 -8.35063 -8.14515 -7.76156 -6.05190 -4.08351 1.83241 2.20761 3.32856 3.38523 3.44439 3.59109 3.62972 4.26123 4.36381 4.45142 4.46663 4.78207 4.92722 5.04933 5.16829 5.28327 5.38777 5.50667 5.53074 5.56738 5.61066 5.77780 5.78847 5.86386 5.91260 6.00278 6.04871 6.15483 6.58658 6.74568 6.83788 6.95011 7.44933 7.72744 7.97934 8.10969 8.36866 9.00164 9.15819 9.57261 11.02440 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.005149 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.409073 B = 5436.962985 C = 5579.773037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.538 3.462 13 O -0.542 6.542 14 N -0.629 5.629 15 C 0.113 3.887 16 C -0.098 4.098 17 H 0.099 0.901 18 C -0.057 4.057 19 S -0.308 6.308 20 C -0.051 4.051 21 C -0.073 4.073 22 C -0.134 4.134 23 C 0.113 3.887 24 H 0.018 0.982 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 3.358 16.292 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 H 0.069 0.931 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.331 3.669 13 O -0.418 6.418 14 N -0.366 5.366 15 C -0.013 4.013 16 C -0.119 4.119 17 H 0.117 0.883 18 C -0.205 4.205 19 S -0.080 6.080 20 C -0.200 4.200 21 C -0.075 4.075 22 C -0.191 4.191 23 C -0.011 4.011 24 H 0.037 0.963 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.438 3.730 16.605 17.024 hybrid contribution -0.382 -1.137 -1.420 1.859 sum -0.820 2.593 15.185 15.426 Atomic orbital electron populations 1.21860 0.96512 0.99915 1.01255 1.18824 0.94221 0.96625 0.88845 0.93137 1.21143 1.31046 1.12842 0.88982 0.90838 1.24936 0.95083 0.95046 0.99091 1.69862 1.37120 1.23033 1.23570 0.86450 0.79481 0.79263 0.82030 1.20645 1.21257 1.19734 1.21863 0.78107 0.84063 0.82877 1.90545 1.38320 1.27085 1.85807 1.48855 1.52886 1.29768 1.05096 1.22247 0.94627 0.88899 0.95479 1.22573 0.98824 0.92923 0.97567 0.88289 1.24310 0.95165 1.00607 1.00411 1.87837 1.50878 1.10519 1.58746 1.24336 0.97888 0.92027 1.05705 1.21849 0.93286 0.95888 0.96521 1.21907 1.00699 1.01784 0.94756 1.22106 1.01262 0.94335 0.83443 0.96283 0.88850 0.95137 0.92941 0.89360 0.91348 0.88544 0.87562 0.87727 0.88890 0.92075 0.91538 0.91920 0.90352 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.75 37.16 0.32 -2.79 16 2 C 0.04 0.89 1.96 -92.92 -0.18 0.70 16 3 H 0.05 1.29 7.86 -51.93 -0.41 0.88 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.54 12.36 7.23 -10.98 -0.08 12.28 16 13 O -0.54 -14.31 15.70 5.55 0.09 -14.22 16 14 N -0.63 -10.99 3.32 -171.24 -0.57 -11.56 16 15 C 0.11 1.55 4.65 -3.13 -0.01 1.53 16 16 C -0.10 -1.07 3.06 -89.38 -0.27 -1.35 16 17 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 18 C -0.06 -0.65 6.82 37.75 0.26 -0.39 16 19 S -0.31 -3.84 23.26 -107.50 -2.50 -6.34 16 20 C -0.05 -0.59 6.36 37.75 0.24 -0.35 16 21 C -0.07 -0.80 0.87 -153.24 -0.13 -0.94 16 22 C -0.13 -1.14 7.87 37.16 0.29 -0.85 16 23 C 0.11 1.61 6.04 -3.10 -0.02 1.59 16 24 H 0.02 0.35 5.16 -51.93 -0.27 0.08 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 28 H 0.09 1.29 6.26 -51.93 -0.33 0.97 16 29 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 30 H 0.10 1.25 7.55 -51.93 -0.39 0.86 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.01 7.81 -51.93 -0.41 0.61 16 33 H 0.09 1.23 7.55 -51.93 -0.39 0.83 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.21 7.25 -51.93 -0.38 0.83 16 38 H 0.06 0.84 7.77 -51.93 -0.40 0.44 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -31.11 305.99 -8.41 -39.52 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.68 Total: -0.93 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 0.03 Total: -3.55 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.06 Total: -35.88 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.50 Total: -6.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.11 -8.41 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891178676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.941 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds