Wall clock time and date at job start Mon Mar 30 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47345 * 239.99862 * 2 1 3 5 5 H 1.08001 * 120.00308 * 240.00687 * 4 2 1 6 6 C 1.37873 * 119.99919 * 59.99636 * 4 2 1 7 7 N 1.31512 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47194 * 90.00302 * 8 6 4 10 10 H 1.48498 * 109.47246 * 210.00408 * 8 6 4 11 11 H 1.48501 * 109.46935 * 330.00478 * 8 6 4 12 12 C 1.50704 * 109.47221 * 119.99886 * 2 1 3 13 13 O 1.21283 * 119.99617 * 119.99670 * 12 2 1 14 14 N 1.34776 * 119.99993 * 299.99922 * 12 2 1 15 15 C 1.47288 * 126.69451 * 0.02562 * 14 12 2 16 16 C 1.53933 * 106.16560 * 210.88797 * 15 14 12 17 17 H 1.09001 * 110.01400 * 222.71288 * 16 15 14 18 18 C 1.54143 * 109.08097 * 102.44749 * 16 15 14 19 19 S 1.83914 * 102.70632 * 218.59425 * 18 16 15 20 20 C 1.83921 * 94.80697 * 34.67932 * 19 18 16 21 21 C 1.53301 * 105.62232 * 341.42414 * 16 15 14 22 22 C 1.53004 * 110.03559 * 241.30413 * 21 16 15 23 23 C 1.47287 * 126.69595 * 179.97438 * 14 12 2 24 24 H 1.09003 * 109.46594 * 300.00012 * 1 2 3 25 25 H 1.08998 * 109.46726 * 60.00290 * 1 2 3 26 26 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00689 * 179.97438 * 7 6 4 28 28 H 1.08993 * 110.11889 * 330.05973 * 15 14 12 29 29 H 1.08998 * 110.11677 * 91.71807 * 15 14 12 30 30 H 1.08995 * 110.75664 * 336.89840 * 18 16 15 31 31 H 1.09002 * 110.75953 * 100.28720 * 18 16 15 32 32 H 1.08996 * 110.76156 * 207.01966 * 20 19 18 33 33 H 1.08993 * 110.76480 * 83.61946 * 20 19 18 34 34 H 1.08994 * 109.47090 * 176.98047 * 22 21 16 35 35 H 1.09003 * 109.46712 * 296.97700 * 22 21 16 36 36 H 1.09001 * 109.47125 * 56.97626 * 22 21 16 37 37 H 1.08998 * 110.11553 * 29.93787 * 23 14 12 38 38 H 1.09001 * 110.11944 * 268.28542 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 0.8745 0.9263 2.7598 16 6 1.4039 1.4926 4.0897 17 1 0.5705 1.7706 4.7349 18 6 2.2701 2.7341 3.7994 19 16 3.6412 2.5635 5.0132 20 6 3.6909 0.7267 4.9324 21 6 2.2083 0.3561 4.7312 22 6 1.5885 -0.0309 6.0755 23 6 2.1130 -0.8253 3.7481 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1617 -3.4843 28 1 0.9732 1.6706 1.9697 29 1 -0.1688 0.6295 2.8677 30 1 2.6519 2.7087 2.7789 31 1 1.7061 3.6494 3.9795 32 1 4.0704 0.3091 5.8649 33 1 4.2909 0.3933 4.0858 34 1 2.1347 -0.8742 6.4980 35 1 1.6439 0.8168 6.7585 36 1 0.5455 -0.3108 5.9276 37 1 3.0831 -1.3131 3.6533 38 1 1.3654 -1.5401 4.0919 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891178676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:14 Heat of formation + Delta-G solvation = -59.234738 kcal Electronic energy + Delta-G solvation = -19456.837388 eV Core-core repulsion = 16617.173395 eV Total energy + Delta-G solvation = -2839.663993 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49007 -39.34035 -35.87915 -34.89313 -32.91252 -32.36924 -28.70966 -27.61557 -27.35319 -26.98213 -24.22061 -22.88612 -20.50962 -19.99947 -18.36064 -17.79714 -17.28335 -16.97999 -16.69906 -15.92095 -15.52689 -15.49414 -15.10055 -14.74892 -14.41449 -14.23393 -13.72682 -13.47954 -13.31148 -12.98061 -12.91128 -12.82091 -12.67319 -12.66197 -12.50670 -12.23787 -12.06140 -11.91163 -11.84354 -11.70905 -11.09577 -11.01418 -10.62808 -10.33105 -9.55952 -8.75816 -8.17541 -6.28069 0.88790 1.26595 1.38968 1.39537 1.51364 1.85123 2.13337 2.44647 3.11741 3.32953 3.37252 3.49684 3.83745 4.01103 4.13142 4.20335 4.28679 4.55082 4.57568 4.60456 4.63925 4.65942 4.72142 4.78282 4.84516 4.94949 4.98355 5.03219 5.06285 5.17312 5.34349 5.43773 5.52374 5.71283 5.94188 6.19576 6.61786 6.80738 7.36423 7.44958 8.88233 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.005149 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.409073 B = 5436.962985 C = 5579.773037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 H 0.037 0.963 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.536 3.464 13 O -0.590 6.590 14 N -0.625 5.625 15 C 0.103 3.897 16 C -0.088 4.088 17 H 0.135 0.865 18 C -0.054 4.054 19 S -0.328 6.328 20 C -0.049 4.049 21 C -0.063 4.063 22 C -0.128 4.128 23 C 0.109 3.891 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.266 0.734 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 4.062 18.124 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 H 0.055 0.945 4 C -0.571 4.571 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.328 3.672 13 O -0.470 6.470 14 N -0.359 5.359 15 C -0.021 4.021 16 C -0.108 4.108 17 H 0.153 0.847 18 C -0.202 4.202 19 S -0.100 6.100 20 C -0.197 4.197 21 C -0.065 4.065 22 C -0.185 4.185 23 C -0.015 4.015 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.832 4.479 18.482 19.105 hybrid contribution 0.066 -1.308 -1.950 2.349 sum -1.766 3.171 16.532 16.926 Atomic orbital electron populations 1.21662 0.94842 0.99371 1.02127 1.18707 0.95511 0.95469 0.89067 0.94545 1.21280 1.31773 1.12777 0.91245 0.93643 1.25567 0.95136 0.95725 1.01311 1.69932 1.37080 1.23389 1.24375 0.85613 0.78610 0.78626 0.79154 1.19815 1.19799 1.20573 1.21381 0.78007 0.83549 0.84300 1.90509 1.40554 1.29105 1.86860 1.48678 1.52086 1.30457 1.04685 1.22552 0.95286 0.87358 0.96860 1.22618 0.99641 0.92263 0.96275 0.84673 1.24363 0.94931 1.02123 0.98816 1.87935 1.51950 1.11386 1.58734 1.24358 0.98162 0.91384 1.05759 1.21851 0.93183 0.94329 0.97169 1.21891 1.01216 1.02612 0.92784 1.22369 1.00770 0.96005 0.82376 0.92224 0.91045 0.96196 0.92507 0.90403 0.89084 0.90849 0.85094 0.85613 0.91450 0.91187 0.90405 0.90677 0.92252 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.75 71.98 0.63 -4.90 16 2 C 0.03 1.70 1.96 -12.29 -0.02 1.68 16 3 H 0.04 1.94 7.86 -2.39 -0.02 1.92 16 4 C -0.53 -31.33 8.37 25.60 0.21 -31.11 16 5 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -50.88 11.32 21.45 0.24 -50.64 16 8 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.54 25.28 7.23 87.66 0.63 25.92 16 13 O -0.59 -32.59 15.70 -3.04 -0.05 -32.64 16 14 N -0.63 -21.52 3.32 -814.08 -2.70 -24.22 16 15 C 0.10 2.60 4.65 86.54 0.40 3.01 16 16 C -0.09 -1.63 3.06 -9.99 -0.03 -1.66 16 17 H 0.14 1.69 7.66 -2.39 -0.02 1.67 16 18 C -0.05 -1.13 6.82 72.37 0.49 -0.64 16 19 S -0.33 -7.61 23.26 -56.49 -1.31 -8.93 16 20 C -0.05 -1.05 6.36 72.37 0.46 -0.59 16 21 C -0.06 -1.21 0.87 -51.36 -0.04 -1.26 16 22 C -0.13 -1.63 7.87 71.98 0.57 -1.06 16 23 C 0.11 2.94 6.04 86.56 0.52 3.46 16 24 H 0.06 2.14 5.16 -2.39 -0.01 2.13 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.08 2.17 6.26 -2.39 -0.01 2.16 16 29 H 0.09 1.96 7.52 -2.39 -0.02 1.94 16 30 H 0.07 1.87 7.55 -2.39 -0.02 1.86 16 31 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.13 2.15 7.81 -2.39 -0.02 2.13 16 33 H 0.07 1.80 7.55 -2.39 -0.02 1.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 1.85 7.25 -2.39 -0.02 1.83 16 38 H 0.08 1.95 7.77 -2.39 -0.02 1.93 16 Total: -1.00 -69.96 305.99 3.53 -66.44 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.05 Total: 8.19 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.27 Total: -5.46 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.46 Total: -74.86 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.31 Total: -8.93 kcal Total: -69.96 3.53 -66.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891178676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds