Wall clock time and date at job start Mon Mar 30 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47279 * 2 1 4 4 C 1.50700 * 109.47183 * 119.99311 * 2 1 3 5 5 H 1.07998 * 120.00076 * 119.99988 * 4 2 1 6 6 C 1.37879 * 120.00043 * 300.00354 * 4 2 1 7 7 N 1.31510 * 120.00178 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99937 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47325 * 89.99795 * 8 6 4 10 10 H 1.48506 * 109.46788 * 209.99924 * 8 6 4 11 11 H 1.48502 * 109.47225 * 329.99638 * 8 6 4 12 12 C 1.50693 * 109.47756 * 239.99716 * 2 1 3 13 13 O 1.21286 * 119.99620 * 334.62748 * 12 2 1 14 14 N 1.34770 * 120.00659 * 154.63362 * 12 2 1 15 15 C 1.48868 * 127.60640 * 354.34659 * 14 12 2 16 16 C 1.54435 * 104.50755 * 219.46708 * 15 14 12 17 17 H 1.09007 * 110.32964 * 217.76528 * 16 15 14 18 18 C 1.54258 * 108.75269 * 96.79454 * 16 15 14 19 19 S 1.84049 * 102.45142 * 218.53006 * 18 16 15 20 20 C 1.84052 * 94.38759 * 36.24083 * 19 18 16 21 21 C 1.54252 * 105.04650 * 336.47143 * 16 15 14 22 22 C 1.53000 * 110.32161 * 241.03623 * 21 16 15 23 23 C 1.48174 * 127.83885 * 174.78806 * 14 12 2 24 24 H 1.09002 * 109.46785 * 65.63539 * 1 2 3 25 25 H 1.09005 * 109.46667 * 185.62601 * 1 2 3 26 26 H 1.08996 * 109.47061 * 305.63191 * 1 2 3 27 27 H 0.97004 * 120.00180 * 179.97438 * 7 6 4 28 28 H 1.09006 * 110.13689 * 100.86252 * 15 14 12 29 29 H 1.08995 * 110.73705 * 338.37387 * 15 14 12 30 30 H 1.09002 * 110.81565 * 100.28703 * 18 16 15 31 31 H 1.09005 * 110.97741 * 336.84533 * 18 16 15 32 32 H 1.09005 * 110.81361 * 81.99338 * 20 19 18 33 33 H 1.08999 * 110.81735 * 205.32506 * 20 19 18 34 34 H 1.08998 * 109.46689 * 294.96224 * 22 21 16 35 35 H 1.09005 * 109.46803 * 54.96159 * 22 21 16 36 36 H 1.08998 * 109.47060 * 174.95997 * 22 21 16 37 37 H 1.09005 * 110.41574 * 21.81250 * 23 14 12 38 38 H 1.08991 * 110.52177 * 259.40201 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1372 -0.8592 3.5566 8 14 0.6246 1.2793 2.6540 9 1 -0.8030 0.8728 2.6996 10 1 0.9757 1.9954 3.9067 11 1 0.8468 2.1766 1.4918 12 6 2.0325 -0.7104 -1.2303 13 8 1.3399 -1.5443 -1.7744 14 7 3.2514 -0.4193 -1.7261 15 6 4.1872 0.6448 -1.2700 16 6 4.7944 1.2103 -2.5725 17 1 5.8482 1.4483 -2.4269 18 6 4.0127 2.4779 -2.9745 19 16 3.9307 2.3291 -4.8071 20 6 3.7455 0.4980 -4.7915 21 6 4.6432 0.0783 -3.6093 22 6 6.0168 -0.3622 -4.1193 23 6 3.9565 -1.0784 -2.8504 24 1 -0.3633 0.4240 -0.9362 25 1 -0.3633 -1.0228 0.1008 26 1 -0.3633 0.5987 0.8352 27 1 1.9031 -0.5275 4.4376 28 1 4.9675 0.2144 -0.6421 29 1 3.6508 1.4251 -0.7303 30 1 4.5560 3.3768 -2.6829 31 1 3.0128 2.4739 -2.5405 32 1 2.7086 0.2151 -4.6097 33 1 4.1057 0.0642 -5.7243 34 1 6.4817 0.4585 -4.6657 35 1 6.6467 -0.6387 -3.2737 36 1 5.9006 -1.2200 -4.7816 37 1 3.2443 -1.5888 -3.4989 38 1 4.7000 -1.7816 -2.4755 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891178677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:16 Heat of formation + Delta-G solvation = -33.459636 kcal Electronic energy + Delta-G solvation = -19585.265702 eV Core-core repulsion = 16746.719401 eV Total energy + Delta-G solvation = -2838.546300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10060 -37.89918 -33.91088 -33.36785 -31.80115 -31.18239 -27.83664 -26.63941 -26.03120 -25.06063 -22.68763 -21.75511 -19.14403 -18.38272 -16.95669 -16.62467 -16.27894 -15.64001 -15.07811 -14.70714 -14.37737 -14.03021 -13.88508 -13.22275 -13.11326 -12.94384 -12.54596 -12.33931 -12.08928 -11.94520 -11.92455 -11.67876 -11.48695 -11.08726 -10.98008 -10.91948 -10.79993 -10.76851 -10.20659 -10.04706 -9.69653 -9.29434 -8.79945 -8.70539 -8.21868 -7.77892 -6.21491 -4.24163 1.83027 2.18472 3.19787 3.27254 3.30694 3.43657 3.55482 4.27575 4.28957 4.38609 4.46774 4.80849 4.93096 5.04886 5.10241 5.18354 5.39472 5.45369 5.53098 5.55571 5.61251 5.74248 5.78225 5.82120 5.87774 6.02646 6.09114 6.10219 6.30500 6.40970 6.46427 6.71946 6.79114 7.23294 7.48685 8.09221 8.31879 8.78012 8.97994 9.36645 10.90749 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.006033 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.208902 B = 4640.195989 C = 4815.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 H 0.043 0.957 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.266 1.266 12 C 0.561 3.439 13 O -0.558 6.558 14 N -0.625 5.625 15 C 0.114 3.886 16 C -0.100 4.100 17 H 0.101 0.899 18 C -0.056 4.056 19 S -0.311 6.311 20 C -0.050 4.050 21 C -0.074 4.074 22 C -0.133 4.133 23 C 0.113 3.887 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 5.922 -13.449 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H 0.061 0.939 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.354 3.646 13 O -0.436 6.436 14 N -0.360 5.360 15 C -0.011 4.011 16 C -0.121 4.121 17 H 0.119 0.881 18 C -0.204 4.204 19 S -0.083 6.083 20 C -0.198 4.198 21 C -0.077 4.077 22 C -0.191 4.191 23 C -0.011 4.011 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.203 6.285 -14.416 17.298 hybrid contribution -0.606 -0.035 1.189 1.335 sum 6.598 6.250 -13.227 16.048 Atomic orbital electron populations 1.21959 0.96763 1.02055 0.98493 1.19312 0.93784 0.96849 0.92103 0.93877 1.20523 1.33025 1.13891 0.87436 0.90589 1.24914 0.95362 0.96719 0.95507 1.69867 1.44928 1.40019 0.98024 0.86838 0.80998 0.83393 0.76976 1.20254 1.22209 1.19158 1.20965 0.77824 0.81864 0.83968 1.90574 1.56034 1.35493 1.61458 1.49139 1.17102 1.35560 1.34240 1.22590 0.93017 0.91127 0.94365 1.22882 1.00924 0.92591 0.95730 0.88075 1.24306 1.03914 1.00572 0.91574 1.87893 1.96956 1.11565 1.11872 1.24339 1.02933 0.91709 1.00834 1.22159 0.96106 0.96024 0.93424 1.21854 0.94290 1.01529 1.01433 1.22405 0.95791 0.93944 0.88994 0.94831 0.91701 0.93967 0.92285 0.90437 0.89218 0.87600 0.88845 0.88978 0.87800 0.91557 0.91763 0.92097 0.89984 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.03 37.16 0.30 -2.77 16 2 C 0.00 0.02 1.85 -92.93 -0.17 -0.15 16 3 H 0.04 0.95 5.68 -51.92 -0.30 0.65 16 4 C -0.51 -13.90 9.13 -34.44 -0.31 -14.21 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.89 20.96 24.31 -169.99 -4.13 16.83 16 9 H -0.28 -6.47 6.92 56.52 0.39 -6.08 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -5.88 6.53 56.52 0.37 -5.51 16 12 C 0.56 12.42 6.95 -10.99 -0.08 12.35 16 13 O -0.56 -13.80 16.47 5.55 0.09 -13.71 16 14 N -0.63 -11.00 3.33 -168.63 -0.56 -11.56 16 15 C 0.11 1.63 6.30 -1.98 -0.01 1.61 16 16 C -0.10 -1.12 3.13 -88.55 -0.28 -1.39 16 17 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 18 C -0.06 -0.63 6.80 37.82 0.26 -0.38 16 19 S -0.31 -3.85 23.27 -107.50 -2.50 -6.35 16 20 C -0.05 -0.57 6.34 37.82 0.24 -0.33 16 21 C -0.07 -0.82 0.85 -152.44 -0.13 -0.95 16 22 C -0.13 -1.15 8.05 37.16 0.30 -0.85 16 23 C 0.11 1.60 6.03 -2.36 -0.01 1.58 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.54 8.05 -51.93 -0.42 1.13 16 26 H 0.04 0.95 3.44 -51.93 -0.18 0.77 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.33 6.11 -51.93 -0.32 1.01 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.19 7.64 -51.93 -0.40 0.79 16 32 H 0.09 1.22 7.63 -51.93 -0.40 0.82 16 33 H 0.10 1.01 7.84 -51.93 -0.41 0.60 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 38 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -31.36 305.21 -7.46 -38.82 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.73 Total: 0.27 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.00 Total: -3.44 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.21 Total: -37.02 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.13 Total: 16.83 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.50 Total: -6.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.36 -7.46 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891178677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds